LOC103044323 (LOC108430700)


Basic Information

Item Value
gene id LOC103044323
gene name LOC108430700
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2589517 ~ 2593691 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250633.3
ACACACTATAGACACCTTTTGGCCAGTTGGCTTTTGTGTGTTGGAACATAAATAGTATGATTTTTTGGGGATTTATACAtctaaaaaccttcatttagtgcACACCAATAGACTGAACGACTGTGGGTGGCGGGGGTGGCGCGTATTATtggatttaaatgaaataagcaCGCTAAATGCACGTTAACGAGATAACAGTTAGCCTGATCTGTGAAGCTCGTCTTTTCTGAAGGGTAACTCCGGTTTGGATTAGAGAGCGGCCGAGAGgAGGAGGTCCGGTGAAGCGATGAGAAGCTCCAGAGATGGCGAGGGAAAGAGCAGCTTTCTTTAGCCAGTTTGAGCAGGAGATAATCCTGAAGACCTTTGAGGAGTACAAGAACATCATAACTGCTAAATGCAACACAGCAGCAGCTTCCAGGTCCAGGGTGGAAGCATGGCAGAAGATAGCAGAGAGGTTAAACGCATCCAACCCCAATAACGTGAAAAGAACCTGGCAGCAGGTCAAAGTCAAGTATAAGAACATCGTACAATGTGcgaATAGGAAAAGAGCGCAGAAGCAGATGCTTGGAGGGGGAGTATCTGCGTCCGGATTCACCCCCGCGGAGGAGCTGGCACTGTGGCAGATCAGAGGAAGACCCATGATGGATGGCATTGCCTGGGCCGGGCCTTCGGAACAGACTGGATCATGTGTTCGGAGCCCCAGTTCCACAGAGGCAGAAAGTTCAGGTCCGCTTTTACAGCATGGGCCCACCATTATTGACAGCGCAGAAGAACCTATCGATCATTCTGATTCAGACCACGATGAGAAGAACATAGTAGTGTGTTCTCATTCTGACCAGGTGAATGATACATTCATCAGCCCTGAAGAACCCGGTCCTTCTGGCCCATTTCGACATACTGATGAAGAGAGTGACGAGGACGTGACCTCGCTCTACAAACGCTACCTCAAACAGGAGATCGCTTACCGACAGCTGAAGATGAAGAAGCTGGAGAAGGAGATCCAGTTGCTTGATAAAAAGCTGGATGTGAGTTAGAGCTCGTCAGGATGTCagtagccctatctggacgggaataaaaaatatattatttttttacactt

Function

NR:

description
PREDICTED: uncharacterized protein LOC108430700 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250633.3 True 1099 mRNA 0.48 8 2589517 2593691

Neighbor

gene id symbol gene type direction distance location
LOC111194265 NA coding upstream 25470 2562135 ~ 2564047 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 59354 2522508 ~ 2530163 (+)
LOC103042800 NA coding upstream 82390 2493964 ~ 2507127 (+)
tsen15 tsen15,LOC107681748 coding upstream 113337 2474061 ~ 2476180 (+)
LOC103041271 LOC108430753 coding upstream 116004 2465331 ~ 2473513 (+)
LOC103044144 LOC108430743 coding downstream 95595 2689286 ~ 2711716 (+)
LOC103044744 NA coding downstream 154127 2747818 ~ 2763344 (+)
LOC111194192 NA coding downstream 327028 2920719 ~ 2922118 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 349445 2943136 ~ 2978445 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 423889 3017580 ~ 3025513 (+)
G138015 NA non-coding upstream 10637 2568039 ~ 2578880 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding upstream 98390 2489424 ~ 2491127 (+)
G137982 ap2m1,LOC108430755 non-coding upstream 169486 2415925 ~ 2420031 (+)
G137978 NA non-coding upstream 180979 2407256 ~ 2408538 (+)
G137977 NA non-coding upstream 188675 2400557 ~ 2400842 (+)
G138026 NA non-coding downstream 14289 2607980 ~ 2609042 (+)
G138029 NA non-coding downstream 61285 2654976 ~ 2713458 (+)
G138043 NA non-coding downstream 62511 2656202 ~ 2733018 (+)
G138030 NA non-coding downstream 86428 2680119 ~ 2749252 (+)
G138045 NA non-coding downstream 115705 2709396 ~ 2740767 (+)
G137929 NA other upstream 565131 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 738204 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1089561 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1549547 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1600879 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 306784 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 488365 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 521729 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1208162 3801853 ~ 3839372 (+)
G138701 NA other downstream 1239564 3833255 ~ 3834460 (+)

Expression


Co-expression Network