LOC103024237


Basic Information

Item Value
gene id LOC103024237
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3063927 ~ 3069951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250654.3
GGCGGAGGAGGAGGGATGCGACCGGCCGCTGGAGCAGAAAAAAAGCGGCTGAGAACAGCAGAGGAACAGCGGGCGGAGTGAACACAGCCTCCGGCAGCTCCGACCGGCCTCTGTCCGCGCAGCCCGGAGCCCAGCCCAGCCCCGGAGCCCGAAACCCGGCCCTCAGGATATTTATAGAAATGATCTTCACCATCATCAGCTGAAGAGCAGCTCCCTCCTGCAGCTCCACACAGAACAACATGGAGACCGGAGCGGCGGTCGCCCTGTGGAccatcctgctgctgctgctgctgaccgCCGCGTCTGATCTGAACGGTGATTCCACTGCATCTCCTCCATCCCTGACCCTTAATAATGTCATCTCCACCGCTTCTCATCTGACCCCAAAAACGGACATTGTGGAGGTCCAGTCTGGTCCAGCCCACACTGAGACTTTACACCCTGCAGAGACAACACTCCCTCCTTCATCAGAGCTGAACACACAGACTGCCAGCAGGATGGATACCTCACCTCCCCCagccagtacacacacacttggaCTAGGTCTTGAGACAGAGGCCACACAGGCTTCTGCAGATACGAGTCCACCTCTCATCTCAGTGAGGAGCACGGCTGTTACTCCAGGATCCATGATAACTCTTTCTGCTGCAGCATCCACAACTTCTACTGCCAGTGCCTCTGAGACGATTCCAACAACTTCTTCAGGTCCTTCTTCCAGACCTGCTTCTACTCTGACTGCCCTGATAGACAGAATCCAGCCTTCAGGACCTGTTCCTCTGGAGAACCCACATCAGGATGGACCTTCTGAACTGGATGTTGGAGATGAAGATTCATCCAAAGTGCCTCACGCCTCTCCGTGGGATCCCCTCCTCGCTGCTCTGGTCTCCATCTTCATCGTCAGCACTGCCCTGGTCTCCATCATGCTCTTCCTCAGGTTTCGGCAGCAAAGTGAGCACCCAGAGTTCCATCGACTGCAGGACCTCCCCATGGATGACCTCTTGGAGGACACGCCTTTGTCAAGATACTCGTATTAAGAAGATACTCAGGACCACTGTCTTCATACTGAAGACCCTCAGGCCACTGAAGCCGCTGTTAAAGGTCCTAAGAACCAAATGAGGCACTGCTTGGATCTcctagttttacagttttacagaaaTAGCCATACAGTAAACACTACACAGAACACCATACTACAAGTATGCAGACACCCTTTCTAATGAAATAATTCAGCTGCACATGTTGTTAACACAGGCATACGCTTAGTTTTATAATCtagaataagaaaaagatagaTTAGAGCGTAATGGTCTGTAGTTGCCAGACATTAACCTGAAACCACCATGTTTCCAAAACGGGCATTAAGCTTAGTCTCAGACTACACAGTATTTTGAATTAAGATTTTCtattagaaggaaaatatagtctatatGACTTGGCTTAATCCCTTTCCAGGAAACCCACCTTAAGTGAGATCCATCACATATAGAACATGTTTCTCGAGTGGGATATTcttaaaactgcaaaaaatggcaaaatctTGGCAGGTAAAGTTCTATAAATGGTCCAAATATCTTGTAACACAATATTATACATGATACAATACACTAAATAAagtaatactaaaaatatataaagctctggaaaaaaataagagaccacctcagaTTCTCTGgtctcatttacagcattt

Function

GO: NA

KEGG:

id description
ko04514 Cell adhesion molecules

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250654.3 True 1690 mRNA 0.48 5 3063927 3069951

Neighbor

gene id symbol gene type direction distance location
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding upstream 14151 3038419 ~ 3049776 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding upstream 38414 3017580 ~ 3025513 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding upstream 85482 2943136 ~ 2978445 (+)
LOC111194192 NA coding upstream 141809 2920719 ~ 2922118 (+)
LOC103044744 NA coding upstream 300583 2747818 ~ 2763344 (+)
LOC103045957 LOC103045957,LOC108430690 coding downstream 35495 3105446 ~ 3108504 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding downstream 57794 3127745 ~ 3142947 (+)
LOC107197652 NA coding downstream 77296 3147247 ~ 3149780 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding downstream 80925 3150876 ~ 3156054 (+)
LOC103046575 LOC108430689 coding downstream 117781 3187732 ~ 3193555 (+)
G138092 NA non-coding upstream 66850 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 164396 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 168517 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 200639 2862962 ~ 2863288 (+)
G138073 NA non-coding upstream 214815 2847557 ~ 2849112 (+)
G138123 NA non-coding downstream 40451 3110402 ~ 3114615 (+)
G138524 gipc2,LOC108430720 non-coding downstream 86805 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 186950 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 422745 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 434625 3504576 ~ 3506945 (+)
LOC103045052 cfap57,LOC106594647 other upstream 127798 2900475 ~ 2936129 (+)
G137929 NA other upstream 1039541 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1212614 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1563971 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 2023957 1037861 ~ 1039970 (+)
LOC103024858 NA other downstream 12105 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 45469 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 731902 3801853 ~ 3839372 (+)
G138701 NA other downstream 763304 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 1026046 4095997 ~ 4102241 (+)

Expression


Co-expression Network