extl2 (extl2)


Basic Information

Item Value
gene id extl2
gene name extl2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4339083 ~ 4344329 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250691.2
TCTGCGCTTCCACAGCGCCTGAATGCGCATGCGCACCGAAACTTCTTCCCAAACTTGTGGCTGGATCATGGCAGGGCTGTGGAGTTAAAATGAGGCTTCATCTCCGCAGCTGCAGGCTCTTCAGCCCCCGCCGGGTGCACGTGATCATCATCccgttgctgctgctgctggtcatTGGTGCTGCTTTAACCTCTTTACTCCCCGCCCCTGAAGATGGAGTCCTGGGCGTCCTCCGCCGGCGTGCAAACAGCTCTCATCCTGTCCAGCTGCCGCGGGACGACTCGTTCACTCTGGTCATGCAGACGTTTAACCGCACAGACCTTCTCCTGAAGCTGCTGAACCATTACCAGGGTGTTCCTCATCTGCACCGGGTTATCATCGTCTGGAACAACGTGGCTGAGCCTCCTCCTGTAAAGCTGTGGGAGTCGCTAGGGCCTCATCCCGTCCAGGTGGTCTTCAAGGAACAGACCACTAACCTGATGCGAAACCGCCTGCAGCCTTTCTCTGAGATTGAGactgatgCTGTGTTGATGCTGGATGACGACACCCTGGTTAGCGCTCCTGATATCAGCTTTGCGTTCTCCGTCTGGAAGCAATTCTCTGACCAGATCGTGGGCTTCGTGCCCAGGAAACATGTGACCACTGCCTCCGGAGTGTTCAGCTATGGCAGCTTTGAACTGCAGGATGCGGATGTGGGAAGTGGAGACAGGTACTCCATGGTGCTGGTGGGCGCCGCCTTCTTCCACCGGCGCTTCTTGGCGCTGTTCCGGAAGCAGCCGGCCGAGGTGCACGCCCTGCTGGACGAGACTCAGAACTGTGATGATATCAGCATGAACTTCGTGGTGGCGCGGGAGCTGGCGGGGTCCGGCCGGCCGTCGGGGGTGTTTGTGAAGCCCGTGGACATGAGGAACCTGGAGAAGGAGGCCGGCAGCGGGTACGTGGGCATGTGGCACCGATCACACCACCTCCTCCAGCGCTCGTACTGCCTGAACAGACTGGCACAGATCTACGGGGACATGCCTCTCCGCTACTCCAACATCATGATCTCACAGTTCGGATTCCCCAGCTACGCGAACCACAAGAGCAGGAGCTGACGGCCCGGtttacacggccaattacccaacccactcattaggactcc

Function

symbol description
extl2 Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human EXTL2 (exostosin like glycosyltransferase 2).

NR:

description
exostosin-like 2 isoform X2

GO:

id name namespace
GO:0006044 N-acetylglucosamine metabolic process biological_process
GO:0015012 heparan sulfate proteoglycan biosynthetic process biological_process
GO:0031227 intrinsic component of endoplasmic reticulum membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K02369 EXTL2; alpha-1,4-N-acetylglucosaminyltransferase EXTL2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250691.2 True 1141 mRNA 0.59 6 4339083 4344329

Neighbor

gene id symbol gene type direction distance location
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding upstream 12684 4307648 ~ 4326399 (+)
LOC103022774 NA coding upstream 184564 4142096 ~ 4154519 (+)
ccdc39 NA coding upstream 243641 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 258979 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 273609 4052730 ~ 4065474 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 41289 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 300672 4645001 ~ 4658142 (+)
LOC103038785 NA coding downstream 369786 4714115 ~ 4719644 (+)
blvra blvra coding downstream 384138 4728467 ~ 4733915 (+)
LOC103039605 NA coding downstream 413513 4757842 ~ 4761690 (+)
G138840 NA non-coding upstream 101556 4236669 ~ 4237527 (+)
G138748 NA non-coding upstream 163498 4172771 ~ 4175585 (+)
G138758 NA non-coding upstream 224965 4104980 ~ 4114118 (+)
G138747 NA non-coding upstream 266995 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 299225 4036371 ~ 4039858 (+)
G138863 NA non-coding downstream 7052 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 10513 4354842 ~ 4355190 (+)
G138866 NA non-coding downstream 11558 4355887 ~ 4356137 (+)
G138867 NA non-coding downstream 13568 4357897 ~ 4358171 (+)
G138868 NA non-coding downstream 14833 4359162 ~ 4359420 (+)
G138839 NA other upstream 93219 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 167073 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 236842 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 499711 3801853 ~ 3839372 (+)
LOC103026815 LOC108428843 other downstream 329051 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 359017 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 545544 4889873 ~ 5007006 (+)
G139154 NA other downstream 1111151 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1715088 6059417 ~ 6060050 (+)

Expression


Co-expression Network