LOC103039605


Basic Information

Item Value
gene id LOC103039605
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4757842 ~ 4761690 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250704.3
GTAAAAGGAGGGTTCTGCTGACCAGCAGTCCCGGGCAGGCTACCAGTTGCttggcttttttttaatgatcaacAATGTTCCTGAAGTGTTCTTTGCGTACCTTTTGTATGCTCACTGCCTTCTTCAGTGACGCCTGGAGCCATGAGACGCCTACTGAGCCTCCAGAGCCAAACTCCTCAAAGGACCTTTATGCAGCCATAGGTTCATCTGTGGAGCTGACCTGTAGAGATGGAACATCTGAAGGTTTGGAATGGAGACAAAATGGATCGATATTGGTGTCTAGCCCCGTTCTACACCTACAGAACACTAGTCTGAAAGATGAGGGCATCTACACATGCTACAGCGCTAACGGAGATCCTGTTAAAACAGTTCACCTGAAGCTGGGCTATGCTCCTTCTCCTCCAGAAGTGAAGTGTTGGGCTCCTAGTTATCCACTGAATGCTCTGTGTTCCTGGACTCAGTCACCAGACCCTATACTGCCAACTCATTACATCACCACCTACTGgCATGTAGATGACCAACAAGCTCCATCTGTCCGTTCTTGCCAGAGACTGAGAGAACAGGACAGACAATGTGTGCTAGAAGATGAAGAACTCTTCTCACTGATCCCGTACCTGGTTAACATCACAGCTGTGAACTCCCTGGGCAGTGCCACCACTATCCTGCCTGTGTTGCCTGATCGCATTGTGAAGCCGGATCCTCCAGTTAATGTGAAGGCCACAGCTCTGCCAGGCAACAAGGTCCATGTGCAGTGGTCTCCCCCACCAACCTGGCCGGACCCAGAGAACTTCAGCCTCAAGTACAACGTGCACTTCTACTGGGGCAcggctaacttagctagcaccATGGGTCCCTATGAGATGGACAGCATGGTTTGGAGTGGGCTGGTGGCGGGACGGACCTACCGGATCCGTGTGTCTGCCATGGACGCCATGGGTTACGGTCAGAGCAGTGAGTGGAGTGACCCTGTGACCATTACTCTAACCAAAAGCTGAGGTCAGGCacataaaaactgtgtttttgggAGCTGGATTATATGAAAACATGAATGAAAAGAGtcaatgataaataaaaaataatcaaatttatAAAAAGGCTGTTTGTAAAGGCTGTTCCATTATTCTAAGACATTgtagaacattaaaaacattacgtTAACAGAGCATAAGGTGGTACAGATACAAGTGTCCTAGGTTgctgctagggtgttgctaggtggtcgaTATAACATTGTCAGTATGCTAtctctgtttttgctgtgttacACCAGGTTGCTGTAAGGTTGTTGCTACGGTATCCCAGATTgctactatggtgttgctgctgtggtgttgtaCATGAATGCAGTATAACATGCATAAAACAAAAGAATTGTCTGATTGAAAATACAGAAAtcagtttat

Function

GO: NA

KEGG:

id description
K24476 EBI3, IL27B; interleukin 27 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250704.3 True 1403 mRNA 0.47 6 4757842 4761690

Neighbor

gene id symbol gene type direction distance location
blvra blvra coding upstream 23927 4728467 ~ 4733915 (+)
LOC103038785 NA coding upstream 38198 4714115 ~ 4719644 (+)
LOC103026534 LOC108428888,LOC108268317 coding upstream 99700 4645001 ~ 4658142 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding upstream 364198 4385618 ~ 4393644 (+)
extl2 extl2 coding upstream 413513 4339083 ~ 4344329 (+)
LOC103040234 keap1a,LOC108428896,LOC107749088,LOC107678690,LOC107721712,LOC108268010,LOC107690048 coding downstream 62940 4824630 ~ 4854002 (+)
znf622 znf622,LOC107721690 coding downstream 246446 5008136 ~ 5016931 (+)
d2hgdh d2hgdh,LOC107749221,LOC107678686 coding downstream 256244 5017934 ~ 5026288 (+)
LOC103028041 otomp,LOC108428860,LOC107678687,LOC108267868,LOC107602611,LOC107690301 coding downstream 286462 5048152 ~ 5057696 (+)
rnf220 rnf220,rnf220a coding downstream 368112 5129802 ~ 5276475 (+)
G138945 NA non-coding upstream 19406 4737891 ~ 4738436 (+)
G138944 NA non-coding upstream 20476 4735636 ~ 4737366 (+)
G138941 NA non-coding upstream 100458 4657060 ~ 4657384 (+)
G138925 NA non-coding upstream 231071 4526570 ~ 4526771 (+)
G138922 NA non-coding upstream 245036 4512596 ~ 4512806 (+)
G138969 NA non-coding downstream 28810 4790500 ~ 4790958 (+)
G138976 NA non-coding downstream 141183 4902873 ~ 4903590 (+)
G138977 NA non-coding downstream 146055 4907745 ~ 4936889 (+)
G138978 NA non-coding downstream 163941 4925631 ~ 4925971 (+)
G138987 NA non-coding downstream 267122 5028812 ~ 5030860 (+)
LOC103026815 LOC108428843 other upstream 35068 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other upstream 49179 4703346 ~ 4708663 (+)
G138839 NA other upstream 511978 4237609 ~ 4245864 (+)
LOC103023077 NA other upstream 585832 4165943 ~ 4172010 (+)
LOC111194271 NA other upstream 655601 4095997 ~ 4102241 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 128183 4889873 ~ 5007006 (+)
G139154 NA other downstream 693790 5455480 ~ 5456004 (+)
LOC107197321 NA other downstream 1297727 6059417 ~ 6060050 (+)
LOC103021569 NA other downstream 1384273 6145963 ~ 6155929 (+)
G139268 NA other downstream 1398030 6159720 ~ 6164164 (+)

Expression


Co-expression Network