LOC103039917 (LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920)


Basic Information

Item Value
gene id LOC103039917
gene name LOC103039917,LOC108428861,LOC107602632,LOC107749223,LOC108267126,LOC107721708,LOC107588920
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4761753 ~ 4767293 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250705.3
CCATTTAGGCTTTGGTCTTGACATGGTCTTGGACCCCTACAAGTAGTGACTTGATTTCGGCCATTCTTAAACTTGGGTTGATCTTGGCCTCCTTTATACTGAGCTGGTGGCTTGGTCTTGATCCTGTTTAGACTTGTTATAAACCTGGTCTTGTCCCCTTTTATAGTGTGTGGGGACAGTACAACTTTCATCCCTCGTTAGGCTCAACGGcttgattggtttattggttcAAGTTCATTGTCATTCTCCAGTCCGTCTTGaatgatgtattggaaccaTTTCAAACCCTCTAGTTGCATTGAACTTTAACTGAACTCAACAAAAGTTCTCCAGATTAAGACCCTACAGTCAATATAGTGAAGTTTCATAGATGAAAAACGAATGGTACACTTTAATATAACTCAAACTTCTCATACTCTTTCATACTGTTTCTCTGGTAaaaccactctctctctctctctctctctctctctctctttcttgctctccaTTTAGCTTATTAAAACAGTGGGATCAAGTGTTCATTCAATGAAATAAAACCCCGAACACAGAGTGACTGAAGGGAAGCATTCCATGTTGGAACTGTTAATGATGGGTGTTGTCAAAGCTGAAGTAGAGCTATCAGTTTAAAACCAATGTACTCTGGTTTTCTCTTCACAAACGATTAGGCTGAAGTGTGTCTCATTTGTCCTGTAATCAGAATCGTTAGATTGGATGATTTGAATCTGTTCCAGCTTGTGTTATTCACTTCTGTGCCGTGCTCTACTCCACAGGGCATCTTTGAAGGACGTAACTGGAGACGGATATTTGAAAGCCGGCAAGGCAGAAAGATGTAATGCAGGCTTTCTGCATAGCTTCAACAAGGATAATGTTTCTTGGCCTTGTAGAGGTCATCTATAATTCAGCTCCCAGTTGTCCCTCCTTCGTTTGTGTCACCGAATCCTCAACCTGTGCTGAACCTGGACAAGGGGCCTCGCATCCAGCTCCGCGAGTCCAGAAGCAGAGGCATGACGGAGGTGGTCAGAAGGCGTCCTCTCATAGCTGGCAGGGAGAAAGGGCCGGGCCCCGGGCGCTACGCTCTCCCCCCCACCATCGGTTACGTAAACCATGACTACACCAAGCCCAGCAGCCCGGCGTACTCCTTCCACAGCCGCCTGAGCAGCAACATGGTGTCGGTGGACTCCAGTCCGGGCCCTCAGTACCACGTGGAGGCCAAAATAACGCGCTTTGGAAGAGACGGCACTCCATCCTACTCAATGCTGGGTAGAAAAAAGCTTTCTGCCGGCACATTCCAAACACCTGGTCCAGGAGCGTACAGTCCAGAGAAGGCTCCTCCTCTGAACGGCCATCGCCAGCCACCCTCCTATACCATGGCTTACCGCACCCGCTACCGCAGCGTAGACGCCATCCCCGCGCCAAACAGCTACACCCTCCCCAACCTGCTGGGCTCGCAGATACCCAACAAGTCCTCCAGCGCCAGCTTCTCCATGTCTTCCCGCAGAAAGTCCGGAGGTCCATCCGAGGACCTGGCCATGACTCCCGGCCCCGGACACTACAACAGCACGGAGCCCAGCATCTACCTCAACAGACAGCCCTCCTTCTCCATCCAGAGCCGCCACAGCATCCCCAGCGACGCCACCCGCAAACCCGGCCCAGGAACGCACAGCCCGGAGAGAGTCATAGCCCACCTGCCTCGCCCACCCTCCTTCTCTCTGGGCGTGAGACATTCTGAGTTCGTCACGCCTCTCGTTATCGATgcaactgactgaaaaaaaaaaagacactgat

Function

NR:

description
outer dense fiber protein 3-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250705.3 True 1788 mRNA 0.50 4 4761753 4767293

Neighbor

gene id symbol gene type direction distance location
LOC103039099 wdr48,LOC103039099,LOC108428893,LOC108268031 coding downstream 13000 4738988 ~ 4748753 (-)
LOC103038044 coa1,LOC103038044,LOC108428892,LOC108267121,LOC107600219 coding downstream 34225 4723386 ~ 4727528 (-)
LOC103037397 LOC108428887,LOC107681713,LOC107722123,LOC107560776 coding downstream 216265 4530536 ~ 4545488 (-)
LOC103036885 LOC103036885,LOC108428857 coding downstream 275768 4484233 ~ 4485985 (-)
LOC103026217 nos1apb,LOC108428842 coding downstream 285836 4459769 ~ 4475917 (-)
LOC103027391 crlf1a,crlf1,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding upstream 4500 4771793 ~ 4805667 (-)
LOC103027706 acvr1l,LOC108428902,LOC108267867,LOC107678695,LOC107602619,LOC107749086,LOC107721710 coding upstream 264126 5031419 ~ 5045009 (-)
ccdc24 NA coding upstream 799891 5567184 ~ 5598775 (-)
b4galt2 b4galt2,LOC107700994,LOC107557142,LOC107599894,LOC107657457 coding upstream 857566 5624859 ~ 5898800 (-)
LOC103034342 NA coding upstream 1209974 5977267 ~ 5997977 (-)
LOC111194275 NA non-coding downstream 7426 4752573 ~ 4754327 (-)
G139011 NA non-coding downstream 54228 4706213 ~ 4707525 (-)
G138919 NA non-coding downstream 340158 4420864 ~ 4421595 (-)
G138913 NA non-coding downstream 364821 4396090 ~ 4396932 (-)
G138910 NA non-coding downstream 410627 4332394 ~ 4351126 (-)
G139027 LOC107602621,LOC108268010,LOC107749088,LOC105907002,LOC106574506,LOC107678690,LOC102777581 non-coding upstream 53910 4821203 ~ 4838073 (-)
G139029 NA non-coding upstream 68489 4835782 ~ 4836531 (-)
G139003 NA non-coding upstream 71573 4838866 ~ 4854692 (-)
G139043 NA non-coding upstream 238199 5005492 ~ 5006291 (-)
G139040 NA non-coding upstream 260627 5027920 ~ 5028705 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other downstream 423556 4330871 ~ 4338197 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other downstream 900397 3847722 ~ 3861356 (-)
G138708 NA other downstream 928083 3832721 ~ 3833670 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 1586400 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 1647067 3095601 ~ 3114686 (-)
G139074 NA other upstream 508813 5276106 ~ 5276468 (-)
G139105 NA other upstream 562785 5330078 ~ 5330805 (-)
G139489 NA other upstream 1241760 6009053 ~ 6010867 (-)
LOC111194281 NA other upstream 1255316 6022609 ~ 6054733 (-)
G139487 NA other upstream 1537676 6304969 ~ 6374709 (-)

Expression


Co-expression Network