LOC103045957 (LOC103045957,LOC108430690)


Basic Information

Item Value
gene id LOC103045957
gene name LOC103045957,LOC108430690
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3105446 ~ 3108504 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250726.2
GCTAGGGTTCACGGATACACACAGTTTTTTGCACCATTGTCAACAAAATGCCCAGTTCTCTCCACCTGGTGATCTTGGTGACGGCACTAACAGTAGCAGTGGAAGAGGCTCTAGCATCTAGAAACCCATATCGACTCGGGGTGAAGCCCACCAAGAGACCTCAGGGTGGAGAAGGTTCCTCACAGCTGCCCTCCCGTGTAGGAGTTCgccacaccaccaccatcagcCCCATCCCCTCCAGCACTGCAGCCACTGAGGTGACCACAGAGTCCATCATGGACGCCTATTCCCTGTCTCCCACTGACAGCACCACCTACTCCAGCGATGCCTACTCCACTGACTACCACACCGAGGCCATGATGCCCCCTGGAGTTGGCCAGAGGAACTATACTCTGGACTACAACGAGTGCTTCTTCAACTTCTGCGAGTGCTGCCCACCAGAGAGGGGTCCACCGGGGCCTGCTGGAGAGAAGGGGTCACGAGGTGTTCCAGGAGAGAAGGGAGAGATGGGACCTCAGGGTCCAGCAGGGCCAACCGGATTTCTTGGAGCTCCTGGATTACAAGGAGAAAAAGgaGATCGAGGAGATGCTGGAGATAAGGGGCTGCCGGGAATACCAGGACTTTCCGGGATACCAGGAGAGAAGGGTGATCCAGGACTTAAAGGAGACAGAGGAGACATAGGTCTGAGTGGACTGAAAGGTGACCCGGGGGAAAGAGGGGAGCCGGGGCAAAATGGCACTAAAGGAGAGATGGGCGAGCCTGGCATGCATGGTCTGATGGGACCCGCCGGATTGGATGGAATGAAGGGGGAAAAAGGTGAAAAGGGAGGAACGGGGGAACCTGGTGGTGCAGAGAAAGGGGCGAAGGGTGACAAAGGTGAACCTGGGCCACCAGGACCAAAGGGGGACATGGGAATGCCAGGGTTCAATGGCACTGATGGGTCTCCTGGGACTGTGGGTGAGAAGGGAGATCCAGGGCTTCAAGGTCCTCCGGGAGAACCGGGCACAAAAGGACCACCTGGACCATCAGGGCAAAGGGGCATGACTGGTATGAAAGGGGTTCGAGGCTTCAAAGGGATGCGTGGTCTAAGGGGGATTAAGGGATCCAAAGGAGAACCTTTCATTCAGAAGCGTTCAGCTTTTAGCGTGGGACTCTTTCCGAGCAGGTCCTTTCCTCCCCCTGGACATCCTGTCAAATTCGACAAGGTCATCTATAACGAGGAAGGTCACTGGGACCCCAACATCAGCAAGTTCAACTGCACGTACGGAGGCGTCTACGTCTTTTCCTACTACATCACCGTGCGCAATCGTCCTTTACGCGCAGCTCTGGTGGTGAACGGAGTTCGGAAGTTGCGCACTCGTGATTCCCTCTACGGCCAGGACATTGACCAGGCGTCCAACATGCTACTTATCCGGCTGTCCTCCGGGGACCAAGTGTGGCTGGAGACGCTGAGGGACTGGAATGGAGTTTATTCCAGCAGCGAAGACGACAGCACCTTCTCTGGATTCTTACTTTTCGCTGACGCCACTAAAGACTAATTTGGTGAATCCTTGAGGGAATCTTTGCGCGGTaacttctctgatcagtgcccATCGTCTAGGCGAGCAGTGACCCATTGTCTAGCCGGGAGCCGCCTATTCTACTTGAGCCTCATACAGAAAACATGCTTACTAACAGCAGCTGACGAGCAACTAATCACTCTGCTTTGTGTCGTATCATCTGAATCTGATGACAGAGTGCACCTTCAGGGATGGTTTTCCTAAATGGTAGTAAAGATAGTTTTAGATTTGATTTGAAGAATGTTTATTGGAGAGGAGATATGTAGCA

Function

NR:

description
otolin-1-A-like

GO:

id name namespace
GO:0045299 otolith mineralization biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24214 OTOL1; otolin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250726.2 True 1827 mRNA 0.54 4 3105446 3108504

Neighbor

gene id symbol gene type direction distance location
LOC103024237 NA coding upstream 35495 3063927 ~ 3069951 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding upstream 55670 3038419 ~ 3049776 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding upstream 79933 3017580 ~ 3025513 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding upstream 127001 2943136 ~ 2978445 (+)
LOC111194192 NA coding upstream 183328 2920719 ~ 2922118 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding downstream 19241 3127745 ~ 3142947 (+)
LOC107197652 NA coding downstream 38743 3147247 ~ 3149780 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding downstream 42372 3150876 ~ 3156054 (+)
LOC103046575 LOC108430689 coding downstream 79228 3187732 ~ 3193555 (+)
cope cope,LOC107690966 coding downstream 86044 3194548 ~ 3200085 (+)
G138092 NA non-coding upstream 108369 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 205915 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 210036 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 242158 2862962 ~ 2863288 (+)
G138073 NA non-coding upstream 256334 2847557 ~ 2849112 (+)
G138123 NA non-coding downstream 1898 3110402 ~ 3114615 (+)
G138524 gipc2,LOC108430720 non-coding downstream 48252 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 148397 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 384192 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 396072 3504576 ~ 3506945 (+)
LOC103024858 NA other upstream 20581 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 169317 2900475 ~ 2936129 (+)
G137929 NA other upstream 1081060 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1254133 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1605490 1491816 ~ 1499956 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 6916 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 693349 3801853 ~ 3839372 (+)
G138701 NA other downstream 724751 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 987493 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 1057439 4165943 ~ 4172010 (+)

Expression


Co-expression Network