LOC103046575 (LOC108430689)


Basic Information

Item Value
gene id LOC103046575
gene name LOC108430689
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3187732 ~ 3193555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250727.2
taatagctttaatatagttttttagtattacatttaaatagtaaaaaatcataaaataggAAATTAGAAGAATGAGAATGAGAagagttgtgtccaaacttttgattggtaatgtatatgtgtatgtataagCACAAATCTAGTCATATcgaatataatgaatatattttaaatattacactatacataccttattaaaaaaacacaacatttacatAGTTTATTGTTACTCAATCCAGTTTATTAATTCAATATGTTAACTAAATAAACCAGGTCATTAATTATAAACTACACTGATTTATAAAGCTGAATGTCTCTTTCTATAATCATGTAATCCTGTGTACTGTTCGTTTTAGTTAAAGGGATGAATGGAGGCTCACGTGGGTCTGGTGCTGAtgctggtgctgatgctgcagctctgttAGTAGACTGTAGCTGTAGCTGTGAGTGTGGATCAGTGGATCAGGAGGTGATGGAGCAGTTTGAGAGCTTGTTCTGTAAGCTGGACCGGAACAGGGATGGGTTTATCTCGgtggaggagctgcaggaggagatgAGGAGGGTTGGGGTGGTGTGTGGTGAAGAGAAAGCCCGGatcaTCGTGAGCAACAGTGACCGTGATCAGGATGGACGACTTAATTACGAGGAGTTCCTGAACTATATAATGGACCAAGAAAAGAAGTGGAAGATTGACTTTCAGAACCTTGATAAGAACAACCGTGGAGTCATTGACCAGGAGGATATCGTAAATGTGTTTAAGGAATTAGGTGTGGTCATATCAAAGCAGAGCGCAAAGAGAATCATCCAGATGATGGATGAGGACAGCTCCATGACTGTGGATTGGGGGGAATTCCTGCAACATGTGATCATCAACCCAGCAGAAAATATCAGAGAGCTTATATCCTCATGGAAGCACACACTGGTGTTTGACGTTGGTGAGAGTCGATCCATGCCTATAGAGCTCACTCAGGCGGAGACGGATCTGTCCGAGTGGAGGAACTTCATCCTGGCTGCAGGTCTGTCTGACGCTGTTTCCAGAACTGTGACGGCTCCCATTGACCGATTAAAGACTCAGCTACAGGTTTATGGCTCCAAGGCTGTGTCTTTGGGTTTGCAAGATCTGAGAACTGGAGGCTTGAGGTCCATGTGGCAGGGAAATGCTGTTAATGTGCTTAAAGGAACACCACAGTCCACACTGCAGTGTTTCCTGTATACCCAGATGAGGAAGCAGACCCTGGGCGAGAGAGATCACCTGTCTGTGGAGCAGCGTTTCGGACTGGGCTGTGTGTCTGGAGCTGTAGCACACGCAGCATTTTACCCCCTAGAGGTTCTGAAGGTGAGGCTGAATCTGCAGCAGGCCGGTAACTACAGCGGACTCCTGGGATGTGCAAAGTCCATTTACAGCAACGAGTCTGTGACAGCTTTCTACAAAGGTTTCAGACCAAGTCTGCTCTGCATGATCCCATATGCTGGAGTGGAGTGTGCTGTTCATCAGTCGATAATGAGCTGGGCCAGACGAAACCCTGCCAACCGCAGTGACATCAAACTGCTGTTCTTCAGCTTTGTGGCGTTCGCGTGTGGACAGGCCAGCAGCTACCCTCTGGCCGTCATTAGAACCCAGCATCAAGCGCAAGcttttacatcaaactGCCAGAATTCCTCACATATATTTCATGGACTGGTTGGGATCTATGAGAAGAACGGGCTGAGAGGTTTCTACAGTGGGATGGGGGCTAGTTTTGTGCGGGCCGTCCCGTGTGCTCTGCTAAATTACACCCTCATCTCTAAACTGGAAGAACTGCTTTCCACACATCTATGATGAGCAATAAAATCCCTGTATAGACAAACA

Function

NR:

description
PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-2-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250727.2 True 1849 mRNA 0.45 10 3187732 3193555

Neighbor

gene id symbol gene type direction distance location
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding upstream 31678 3150876 ~ 3156054 (+)
LOC107197652 NA coding upstream 37952 3147247 ~ 3149780 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding upstream 44785 3127745 ~ 3142947 (+)
LOC103045957 LOC103045957,LOC108430690 coding upstream 79228 3105446 ~ 3108504 (+)
LOC103024237 NA coding upstream 117781 3063927 ~ 3069951 (+)
cope cope,LOC107690966 coding downstream 993 3194548 ~ 3200085 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding downstream 17005 3210560 ~ 3289693 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding downstream 117606 3311161 ~ 3361634 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding downstream 223871 3417426 ~ 3477561 (+)
miga1 miga1,LOC107558173 coding downstream 342862 3536417 ~ 3552555 (+)
G138524 gipc2,LOC108430720 non-coding upstream 12368 3156756 ~ 3175364 (+)
G138123 NA non-coding upstream 73117 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 190655 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 288201 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 292322 2892643 ~ 2895410 (+)
G138534 NA non-coding downstream 63346 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 299141 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 311021 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 331076 3524631 ~ 3526308 (+)
G138642 NA non-coding downstream 390463 3584018 ~ 3584290 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 68244 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 102867 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 251603 2900475 ~ 2936129 (+)
G137929 NA other upstream 1163346 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1336419 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 608298 3801853 ~ 3839372 (+)
G138701 NA other downstream 639700 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 902442 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 972388 4165943 ~ 4172010 (+)
G138839 NA other downstream 1044054 4237609 ~ 4245864 (+)

Expression


Co-expression Network