efcab14 (efcab14,LOC106569140)


Basic Information

Item Value
gene id efcab14
gene name efcab14,LOC106569140
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 16927428 ~ 16940368 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254595.3
GTAACCTAACGCCTCCCGGTAGGAAGCGGGTTAGCCGATGCCGCTGAAGGAACGGGGCTGAGCGGGTTTAATTCGGCGCTGAAGAGAAGCTGAGGCTGTTTGGGGCGCAGAGGAGGCTTTAATACATATCTGAACACATAGAGACAAAAGGCGCGGGGgtgaattgttttttaaaaagtgataaaatCGCTGTTTTATGGCCGGGAAAAGGAAAGGAGCCATGTagcgctagctagcttagctaactagcaCAGGTCTGGTTTACAGCTGGAGCTGTTCAGCGGTCAGTTTAACTATGTTATGTGAGTATACAgatatttattacagttatttcGCTGGTTAAAATGTGGATATACCTTAGGTAGCTGACTAAAGCCGGTAAAAGTGTGCTAATCTGACGGATTTATCCTAGTTTAGCTATCTACCGTTAGCCCAGACTGTCACCCACAGGTAAACAAACCCAGCCTGGTCTCTGACAGCCCGCCCCGCTCTAACGTTAGCTTACCCCAAACTGGATAAAACCCTGGATCTGGTCGGCCTGAATTCTGGGTCGGCCGGGGCTCTGACCCCccagaagaagatgaagaaacgCAAGGAGCTGAACGCGTTGATCGGGCTCGGCGACAGCAAGAGGAAGAAGACCAAGAAGTGCTCCGGCCACCGGCTACTGCGGACCGAGCCGCCCGGCTCAGAGTCCGAGTCCAGCTCCGAGGACGAGGAGTTCAGCGGCCTGAGCAGCGGTGGAGTTTTCAGAAAAAGTTACACTCAGTGCTGCACCATCTGCTACCCGCTGTGTGTGTTCATAATTTTGGCTGCTTGTGTCATGGCCTGTGCTGGACTGATATGGATGCAGATAGCACTAAAAGAAGATTTGGATTCCCTCAAGGAGAAACTTCGCACTATGGAATCAAGCCAAAAGGCGTCTTCACATGACATACCAAAGCTTAGTGAGGAGCTGAAGGCCAAGCAGCGGATGTTGGAGGACATAGAGAGTGGAGACAAGGGCCTGAATAAACTGTGGTCAAATCTTACAGAAATCAACAGAAAAATTAGTACACTGGACTCTGCTGTTAACCACCTGAAGGCAAACATTAAATCAGCATCAGATTTGATTACTCTGCCAACAACAGTTGAAGAGCTGCAGAAGAGTGTTGCCACCATCGGAAGCACACTGACTAGTGTTCAACATGATGTTACGATGATTCAGACCTTTATAGAGGACCAGAAGAAAGGAGAGAACCAACAAAAGGGTCAGACGGACCCGCCACAGTCTATGGACCCTGATGATAGCAGCAGACGCCTTGGTGAAGGGACAGAAAACAGTAGTAATTCTGGATCCACACAGTCATCAGGCTCGAACCCCACACGTCATCCACGGTTTCTAAATAAGAACCGAGCCAAGAGAGAGAATGCACCTACACAACAGCGTCTAACGCTCCCAGGAGTCAAATCTGTTGAAGaTTTGGAGAAGCTCCTGCAAGCTCAGCCGGACTTCTCGTCTGGAGGCGTGTCGTATGAAGATTTAAGGAAGATCTTTGGGCCGTCCACTCCAGGCGCCCACCTTCTTGAGCCTTATGATGTGGATCAAGACCACAGGTATACCCTGGCGGAGCTGCAGGCTGCGATTGCTCTGTGAGCTCAgcccttgttttgtttttttgtcagtggATCAATGCGAACGGGTTGGGGCTGGGTTCCTGATCGTGGAACGGCCGTGTAGAACAATAACTTGATATACGAGAACACTTTTCCCTCGAGCCCCGAACAAACAGCTGGACGACACGCTGACTCAGTGGATATACTGTTCAGGGGGGCTCACAATGACTGCTGCACTTTCTAATTTCGTTTAATCAGTATTCGAGTGGTTAACTGGCAAACAGCAGACGGACCTTCTTTGCATGCCATGAGCACAGGGTACATGTCACCAGTTCAGctgtttactttacttttactttggcGATCACAGGTATGATGTAAGCGTTTACAGTGCTCTAATAACTCTCTAATTGACCTCCAAACAACTGATTTTGAAGATTCTGAAGCTGTTGAAGGTGTTAATGGTTTGTTTTAGTAGATGTGAATGTGAAAGGAATAAATAGTTAATCAGAAGTTAATACTCATTGCAGTTCCTGCTGGCCACTTTGAGGCCTAacataaaaattaagaaatgtatGCTAGATTTATTCTCACGAAACGTCACTTTTCCCACTGGTGATTATCTGAATGTTTGTAGTCATGTTTTTCTATGAGTACACAATCATGCTGAAATGTTCTCTAGGCtagtagttttttttgtctttttatctcCCTTATTTATATCCTATCCTATTGAAATATAATCCCTTCTAATTATAATCTGAATTCACTATTTGAAGGGCTATAAAGATAATAAGCTTTCTCATTATTTAATGTACAGTTGATTTACTCATTCAGCAGATGTAGCATCTGCCCAGACCAAGATTGTGTCTAAAGGCCTATTCAcaaaaagcaattttttttcgCATGAAATTTTTACCTAAATTTGCCtactccacatttttttttttttgtgaactataaaacaaaaaaaaaactaagtttGCCATATAAGCTTTTGTCTTTTGCTGCGAACAGGATGAGCTGTTCTGCTGCTGTCtatatgcttgtttttttgtagtcTACAAAAGGACTATAGCgaataattaataacaaaaaaaagtgaaataagtcaaatgtgaaaaactgaatcatttataccaCATAGTGATATTTAAGGTGCTGTGGTCAAATCACAATCAGCATGGACTGAGGTATCCTTTGTAAATATTGCAGTTGCgagattgcaaaattaaagcCTGTAAAAAAGCCAAAGTTCGGTTATTCAGCTTTTGGCAAAATGTTTCCCTTTGTCTAATTACAGccacacattttaaatttaatgcaCCCCGAGTCTGAAATCATGTTGGCGGAGCTCCGATTGTCCAGCTTTTTACTAAAACATCTGTACAGTGGAGAAAATAGAGCAGGCTCcgacttaaaaatgtatttgtcgTTGGCACCGTAAATatatttgtgttcttttttttttaagcttgatgtttttgtttgtttttataaaagttAGACTTTGTGTGAATAGGCCTTATGCCTTTATTGGACAAAAACAGCATGTTTATTGTTTAACCCTcttgttatgttcatttgtaagGAACAGCAATAATGTTCCCAGGTCAAATTGACTCGTTTTTAACAAGGTTTAATATTCCAAACATATTTAACATGATCAATATTTTCACCCTTTACATATCATAATTTACTGAGCCTAAAATGATTTGGAACAGTATGCGTGTAATAGGAGAGTGTAATAGGAGCGTGTAATAGGTTTCCTGCATCAAAAATGAttggaaaaatatttttctgtatttatttcagtttagaaacaggACCGTTTGATCTGCAACATAAAAGAAGGGTTAATCCATTAAATTGATCATTTATGCCTAAAGGCATGTGTTCTGGCTCACACTCTTTGTACCCCAGTTGTGTTTAAAGGACTAGAAGGATAATTCTACACAGTTTGTCCATTTACAAGGAAAATCTTAAAGTCCTGACAGGtagtgaaaaaaacactgatttggtttgagtgtatattttttatattgctatATGCTAATGTTTCACAGACTGTCCAGTCACATTAGACTGTCTGATGTTCAGTGATGTAAATATATGAACCTGGTATTAGCCTGAGTGTCAGCCCAGTGGCAGCAGCACCGCTTTTGTCCTGCTAAACGTAAACTGCTTCATTGTTTCCCTCTTACTATTGTTTTCCTCCAGTCTCTCCATGACCCACTTAGTTTACTTGATTTTGCTTGATTTTCCAGTCGGTGACTTTTTGAAATTGAAGTTTTAGATCAGAGGCGAGGCCCAACAAATATCTGGCAGTTTTGCTATATGGACCAGTCGGCCATTGCTACAGCCAATGAGAGCGCCAGACACCATTAcacagacaagacaagacaaatttATATAGTGTGAAAGGTACAACCATGTGACCACTCcaaaagtcgtgtagtgtgaacctgatGTATGCTACTTTCCAGTTTTAAGCTGGAAATGcttatcattttaaaactaatatcaaagaacaaacaaTATCTTCAATGCTGGCTTTAACTGGCGTCACTTGGAGCTTCAGTCCAACTTGTTCTCCAGCCCACTCGTGATGCAGACCTGGCTGAATGTGTTTAATGTCAGACTGTTTGTAGCAGAAGCAATACACCATGTCAGCTGGCTGGTGCTTGGGCTAATTTTTAACTACTTTATGTATTAATAAAGATTGTTCTTATGAAGGTTTAGGTTGGATAACTGGATCATGCAAAATAATTCTCAGCATTGTACATTGTACTGAATTCAGGTTTGCTTTGCGTTTTGCTTTTGACATAACATGTATAAAGGCCTAATTTATCCCAAA

Function

symbol description
efcab14 Predicted to enable calcium ion binding activity. Predicted to be integral component of membrane.

NR:

description
PREDICTED: EF-hand calcium-binding domain-containing protein 14

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254595.3 True 4453 mRNA 0.41 8 16927428 16940368

Neighbor

gene id symbol gene type direction distance location
LOC103044680 NA coding upstream 1427923 15481787 ~ 15499505 (+)
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 1451213 15443821 ~ 15476215 (+)
trnae-uuc_20 NA coding upstream 1513581 15413776 ~ 15413847 (+)
LOC103043450 LOC103043450 coding upstream 1542522 15379678 ~ 15384906 (+)
LOC103043145 LOC108440275 coding upstream 1548893 15375965 ~ 15378535 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 53971 16994339 ~ 17004804 (+)
LOC111194332 NA coding downstream 294831 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 1813439 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 1854535 18794903 ~ 18816397 (+)
exosc4 exosc4,exos4 coding downstream 1881050 18821418 ~ 18826143 (+)
G142065 NA non-coding upstream 29121 16897864 ~ 16898307 (+)
G142060 NA non-coding upstream 41021 16885916 ~ 16886407 (+)
G142047 NA non-coding upstream 111741 16815486 ~ 16815687 (+)
G142046 NA non-coding upstream 117276 16809465 ~ 16810152 (+)
G142044 NA non-coding upstream 121256 16805097 ~ 16806172 (+)
G142072 NA non-coding downstream 22824 16963192 ~ 16963514 (+)
G142079 NA non-coding downstream 66527 17006895 ~ 17061552 (+)
G142082 NA non-coding downstream 72733 17013101 ~ 17014834 (+)
G142091 abcf3 non-coding downstream 108082 17048450 ~ 17049952 (+)
G142119 NA non-coding downstream 204274 17144642 ~ 17145074 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 1525524 15385616 ~ 15401904 (+)
G141791 NA other upstream 1641971 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 1870455 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 2142616 14779181 ~ 14784812 (+)
G141495 NA other upstream 2397132 14528140 ~ 14530296 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 8014 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 31834 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 117926 17058294 ~ 17073484 (+)
G142166 LOC108436878 other downstream 262854 17203222 ~ 17204493 (+)
G142378 gpaa1 other downstream 1915868 18856236 ~ 18893509 (+)

Expression


Co-expression Network