LOC103035264 (LOC108437087)


Basic Information

Item Value
gene id LOC103035264
gene name LOC108437087
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28496640 ~ 28564802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255169.3
CCGGGTGGAGGAGGCGAAGGAAAGGGGGCGGGGCCTGAGCTCCGCGTTGTCAACGTCGTTAATCCCGAGTTTCAGGTGGCTGCAGTCCGCGCAGTCGAGCTCGAGCTCCCGGGACGGTACGGTACGGCTGAAAGTAGTTAGTTAACGTGTGAGCGGAGTGAGAGAATAGGGAAAAGGGTGAGACgtgagagagaagagtgagaTAAAGGATGGCTCCGACTGGGAGAAGAGTGAGTTTAAAGCTTTTAACgacttattttcatttaaacgCTGCGCTCCGCAGCCTCGCCTCTTCCGCCTGTGGGACTCGCTCCAGTGGGGCGAGAGGAACTCCGGGTCGGGGTTTTGGactattttctgtgttttaacgCTGGAAAGAGCTAAAGTTGTTGGACAGCTGTTCTCCCGCGCCGTTCCTCTGGTTGGACATTTATTCTATGCCCGATGTGCTCCTGTTTCAACTTCTGAGAAATGGATGACCCTTTGAAAGGCATTTGgtttctgctgctgttccaCACAAGTGCTTAAGCTGTACCCAAAGGCAATGATAGGTCACACATGGCTGAAGACGTCCTCAGACCTTCCTCCTAAGAACCAGCTGACTTCATCTGTTCACTAAAGCAATCAACTAACAATCCACTTCATGACATAACCCTACTGTGTTTGGTGAGGATTTAACCTCGTTCTGGTTTGATTGCTTTGGGCTTACCTTGAAGATAAACTTTTGGAAACTCACAAGAGGCATCTGCCTCATCCCTGAAGCATTTGTGAAATTCTACCCTCATGTTTAACAGCACTACCACTTCTGCTTGTGGAATTACATAGCCTCCCACTGAAGAGGCTTCTTTAATTCAAGGAAATTAGACTAAACCTGCTTTATCAAGAGACTCAGACTCTACTTCAAGGTATATCCCCTTCCCATAGTCCAATGGCATGGGCAAAGTTCTTCAGGAGACCGGGAGGCAATCTTGGCAAGGCTTATCAGCCGGGTTCTATGCTGTCCCTGGCGCCCACCAAAGGACTACTCAATGAGCCAGGACAGAATAGCTGCTTTCTCAACAGTGCAATACAGGTACTATGGCAACTTGACATCTTCAGACGGAGTCTGCGACAGTTACCCACCCACTACTGTTTAGGAGACTCGTGCATCTTCTGTGCATTAAAGGGAATATTTTCTCAGTTCCAGCACAGCAGAGAACGAGCCCTACCCTCAGACAACCTGCGTCATGCCCTAGCAGAAACTTTTAAAGATGAGCAGCGCTTCCAGTTAGGTTTTATGGACGATGCAGCAGAATGCTTTGAAAACATTCTGCAGAGAATTCATCTCCATATCGTTCCTGATGCAGAAACAGATGCCTGTACATCAAAATCCTGTATCACGCACCAGAAGTTTGCAATGACACTTTACGAACAGTGTGTATGTCGAAGCTGCGGGGCCTCGTCTGACCCTCTGCCCTTCACTGAGTTAGTGCATTATGTTTCTACCACAGCCCTCTgCCAACAGTTCTTTGAGCGGAGAGATGAAAGGCTGCGTTCTGACATGTTTGGAGAGCTGCTGCAGGCAGCCAGCACCATTGGAGACCTACGCAACTGCCCAAGTAATTGTGGTCAGAGGATTAAGATTCGACGTGTGCTGATGAACTCTCCCGAGATCGTCACCATTGGTTTTGTGTGGGACTCAGAGCAATCTGACCTCACAGAGGATGTCATCAGATCACTAGGACCACACCTCAGCCTCTCAGGGCTCTTTTATCGTGTCACCGATGAGCATGCCAAAAAGAGTGATCTGCAGTTGGTGGGGATGATTTGCTACTCCAGCAGACACTACTGTTCCTTCGCCTACCACACAAAGTCTTCCAAATGGGTCTTCTTTGATGATGCCACAGTCAAAGAGGTGGGCACTAAATGGAAGGATGTTGTAACTAAATGCATCCGAGGACATTTCCAGCCTCTGTTGTTGTTCTACTCCAATCCTGAGGGCAGCGCAGTGTCTGTTGATGATCCCTCTCGGACGAATCACACTGCTAACAATAAGGGCCAGGTCAATGGTGAAATCCCAGGCACTCCCCAGCCGCCCAGTAAGAAGCTGGAGTTGACCCGAGAGAACCTCACAGCGCTGTTGTCAGGTCATAGCACTTTAAAGCAGAAGAGCCAGCCACTGTCTGCATTCAGCCGTAGCAGCAACCAGACCAGCGGTGGGAGGGGACCAGTGAAGATAAGCAGTGATCCCAAGGGTTACTTCCGAGAGCTCTCCAAAGAGGTTGCCAGAGAAGCCCGTAACATCAACATCATGAAGAAAGACTCTGACAGATCACAGCAGAGGCAAGAAATGGCAAGAAACCGAGATCCAGCCTCAGACAGGACCTATTCCCGCTCGCTCTCTCCTCCTGAGAACGGGTTTAAAGCCATGGAGTCGAAATTCTACAGCAGTCAGGGAAGAGGCCCAACACGGGCTGAGCGTCCTCTGTACACAAACAGCCGCGCAGCCCATCCACCACGTTCACACTCCCAGCCTCGCGTCTCGCTTCAACCTCCGAGAGCTGAGCTATCCAACGGTTACGATACAGACAGCAGCCAGGACTCGCGAGAGCGGTCTAACGGGGCCTCGCGTTCCCGCCCCGGCCGAGCCTGGAGACCCATGAGAGAGGCCCTGAACGTAGACAGCATCCTCAGCGGTAATGATGACAGACAGCTCCCCGGCATGCGCCGGCAGGCCCCCAGACCGGAAAGGCCGCTTTACGAACGCGATTCTGCTTGGTCTGGACGGGAAGAAGCTAAACCAAAAAGTTTGATGACCATTTATGAGGACGAGCAGCGGCATGAATTAGGCAGCAGGAGCTCACTGGACTCAGAAGGACGTGAAAAGGAGAGGACTAAAGGTACAGTTAACAGCCTCACTGTGAGAAACGATAACTGGAAGATTCAGAGAACAGAGTCTGGCTACGAGAGCAGTGACAGGCTCAGCAACGGCTCCACGAACCTGGACTCTCCCGTGGTGGAGAACTTGGGTGGCAAAGAACTTCGGTCCATTCCTGAGGTACACTTGTCCAGGGACCTGATTCACATTCGGAGGTACGATGAGTTGAAGTCGGACTTCTTACAGACGCCATTTTCTTATGGAGATCTTCAAAACAAAGGTGATGAACTTCAGTTGAGTCCCGAAAGTCACAGACGAGCTTTCCAGTACATGCCTGCTACTGTCTTGGAGAGAATGGAGAAGTCTACAGATGAGATGGACGACGACACCAGGTCTCATTTCCTGCACAAAACCAGCAGCTCGGAGTGGAACAGCTCTGATGACCTCGCTGGTCCTTTATCTGAGCAGGAGGATGCTTTCCCTCAAACTGACAGTGCAGCTCCTTTTGTTCTTCAGCAGCCCTACCAGAGTTACCACCAATCCTCAGCGCCACCGTTGCCCCCCAAAACCCACGTTCTAAGAATGGAGAACAGAAAGGGCCTGATCCAAGACTCTGCTCATCCCAGACCCCAGTCTCCAGCCCGTAAAGGAGTAGCTCTATCCAGAAGAAGTCCTGAGAAGTGGATGGAGAACTCTCCTGAACAAACCATGCTCTCTTCATCAGACTCCAGCTCAAAATCTGGCTCTTCTGACCAGGAAAGGACTGATTTGTCCACCAGTGAGAGCGAGGAGAAGTGCCCTAAACTCCCTGTGCCTCGGGCTGGGTCCCCCACCACAGGAGAGTGTGCGATCCCCACCACCTACTTTTCTGTTGATAACTGCATGACGGACACCTACAGGGCTAAGTACCATAAGAAAAAGCCTGCTCTGTACATGACGACCACAGATTCCAAACCAGGAGACCACACATCATCTGGTGAGAGTGATCGAGGGGAAAGTGCATCCCCAGCTCCTTCAGACATACAGTTTCCAGACTTCTCCAGACCCAGACAAGAAACAGCCCAAAGCTCCAGTAAACCCATGGTGAAGTGGAATCCTGTTTCTTTGAAAGGACTGGATGAGCATGGCTTCCTATGACATCAAGCATCATTTTGAATGGTGTGATGGTATTGATTGTATGAATGTTACAGACTCTGATTTTGTTCTACCCGACCCAAAACAGCCTTTTGTAACTgtaacaaaaaaactgaaaatttaGAGGTCATGTGAATGGCTCCATTTGGAAAATTAACAAATGACCACTTAGACCTAATGATTCCAAGTTTAAGAACTATGCAGCAGTGTTGCCTCCTGTAAcaggttgaaaaaaaaaatctgaacttAGAGATTTAGTATCCGATGCCAAAGAGATTGATTAGTCCCTCACGTAGAGTCTCCACTTGTCTACTACCTGTGGATTGTGTCATATCCACTCAAGAAGCAGTTCTGTGGCATTATGAGACTTTTACTGTTGCACATTTATGAGCCAAAGGAGAATAAAAAGTCTAAAACTTA

Function

NR:

description
PREDICTED: inactive ubiquitin carboxyl-terminal hydrolase 53-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255169.3 True 4411 mRNA 0.50 17 28496640 28564802

Neighbor

gene id symbol gene type direction distance location
LOC103035569 NA coding upstream 21613 28457904 ~ 28475027 (+)
LOC103035875 LOC108437090 coding upstream 51551 28411313 ~ 28445089 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding upstream 127678 28299496 ~ 28368962 (+)
adgra3 adgra3,LOC107691845 coding upstream 412615 28030757 ~ 28084025 (+)
LOC111194351 NA coding upstream 1190965 27301866 ~ 27305675 (+)
LOC103034936 LOC108437088 coding downstream 55927 28620729 ~ 28624487 (+)
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding downstream 174389 28739191 ~ 28758078 (+)
phf23 phf23,LOC108413721,LOC107687050,LOC107687030,LOC107561685,LOC107593540 coding downstream 243190 28807992 ~ 28814308 (+)
LOC103046260 plscr3,LOC103046260,LOC107593564,LOC107687051,LOC107754701,LOC107561702,LOC108267765 coding downstream 263269 28828071 ~ 28844665 (+)
LOC103045946 senp3b,LOC108443968 coding downstream 311935 28876737 ~ 28885074 (+)
G144953 sec24d,LOC103036498 non-coding upstream 112517 28381692 ~ 28384123 (+)
G144948 NA non-coding upstream 119584 28375064 ~ 28377056 (+)
G144899 NA non-coding upstream 121656 28282468 ~ 28374984 (+)
G144866 NA non-coding upstream 526135 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 585513 27910696 ~ 27911127 (+)
G144969 frem1 non-coding downstream 3591 28568393 ~ 28570000 (+)
G145007 NA non-coding downstream 209895 28774697 ~ 28775779 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 211080 28775882 ~ 28778448 (+)
G145013 NA non-coding downstream 229420 28794222 ~ 28796628 (+)
G145105 NA non-coding downstream 283143 28847945 ~ 28850850 (+)
G144671 NA other upstream 1288049 27206742 ~ 27208591 (+)
G144613 NA other upstream 1684513 26807716 ~ 26812127 (+)
G144584 NA other upstream 1742198 26750835 ~ 26754442 (+)
G144372 NA other upstream 2707798 25786737 ~ 25788842 (+)
G144333 NA other upstream 2842390 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 61242 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 590923 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 864223 29429025 ~ 29432026 (+)
G145438 NA other downstream 1613402 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1764656 30329458 ~ 30331665 (+)

Expression


Co-expression Network