LOC103035569


Basic Information

Item Value
gene id LOC103035569
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28457904 ~ 28475027 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255170.3
CCCCTCGGCCCGTGGAAGAGCCAGGACCGGCACGGgtcacattacacattacagtTCATTCCTCTGCCCTGTACACTAAGAGATACAAGAACATCCTGAGACACCTCCAGACACATCTGAAACACAGGCCACCATGTCACACTTCTTAATGACAACAAGGGAGAGGAAGATGCAGGCGGCGGCCATTTGCAGAGAGATCCGGGGCAGCGATGAGCCCAAGGTGGATGTGGGGAGGAAGGTGAAGGCACCTAAAGAAATCATGCTGGATGAGCTTTCCTTAGCTTCCAACAGAGGATCTCGCCTCTTCAAGATGCGTCAGATGCGCTCAGAGAAATACACATTTGAAAGCATCCAGAATAAAACTAATGTTCAAATCAGTACCAGTATGATTCCTCCTGTCCCAGGTACTGAAACCAATGGTGTAGGAGACGACCAGGCACCAAAAACTTCTTCAAACACACCTAACCAGTCTACCAATCCTGACTCTCTCGCTCCAGGTTACGGAGGTCCCCTGAAGGACATTCCAGCCGAGAAGTTCAACTGCACAGCCATTCCCAAAGCCTACCTCTCTCCCTGGGATCTGGCTATCAGCACTGACCCCTTGCTTGCTGACACACTGAATGCACAAATGCCCGAACCTGAGCCTCGATCTGAGATTCCAGAGTACAAGAGCTTTAACCGGGTGGCCACTCCATTCGGCGGCTTTGGAAAAGCACCTAAAGTCCCAGTGAAGCCAGTCGAGGTGGACGTTGTCTCGGGCATCCCCAGCCTCCCTCTCCCAGCCCCCCCAGCTGAGACTGTGTCCACACGGCCCACCTTCAACAGGACAGCTCTAGGCTGGGTGAATGAAAGTGCCCCCCTGGTCCTTCCCACTGTCAGCCTGGAGCCCTTGTCGTCCGCACCAACCATGTTTATCCCTGAATCTGATGAGCTCTGAGCTTCACTCTCATTACTAGCCTGGAAAAAAGTGATGCAATGAATTTGCTTTAAGGGCCCATATCCTACATTTACctcatatttttatagttcacTGAGGTCCTGCAATGTTCCAAAAATCATCCAAAGTTAATTTTTACACTGCAATGTTCTAATCTCCCTCATCTGATTTCTTAGAAATAGACAGAGTTTTTCTGATACTTTGCCTTTAGGATGGATACTAGCCATCTCTTGATGCCTGTTCTGATTGTGTTCAACTATAACAACTGCCATATAAATGGGCGCAGTTTacactttatttcaataaagcAAAGGGAAATCCATTTTCCATAATAAATGCCCtatatttaaatgcatcttTAGATAAATAGTTAACctgttaatttaatgtattttctattttatatcaAGTGAATTCAATGCATCGCTTTTTTTGCAGAGTAATGTAATGCACCTGAAGCTGCACTTTCGAAACTGATGCACAAGATGATGCACAACTGTTTACAGTGTTACGCCGCCCGGTCAAGACATGTAGACAACAGTGAGTGTTGAGGTGTTTTGTTGAATCTAAAAGAAATTTCTTTCTGGTTAAAACACTATGTTTACTAATATTATGTAACCGTTCCCCTCTTCACTTGTGTACTTCAAACACTGTAGCAAATGGTcttgtaatataaaaaacagcaatcCTACATTTCTTCAACTGTCATGTGACCCTACACCTGTGCGCACCTGTGCACCTGTAAATACACTTAGTGTTGAAGATGATTAActtattatttgttttcattatttattacattaaaaaaataaatgatgaaatgtaaaa

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255170.3 True 1765 mRNA 0.44 6 28457904 28475027

Neighbor

gene id symbol gene type direction distance location
LOC103035875 LOC108437090 coding upstream 12815 28411313 ~ 28445089 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding upstream 88942 28299496 ~ 28368962 (+)
adgra3 adgra3,LOC107691845 coding upstream 373879 28030757 ~ 28084025 (+)
LOC111194351 NA coding upstream 1152229 27301866 ~ 27305675 (+)
LOC111194356 NA coding upstream 1206781 27248351 ~ 27251123 (+)
LOC103035264 LOC108437087 coding downstream 21613 28496640 ~ 28564802 (+)
LOC103034936 LOC108437088 coding downstream 145702 28620729 ~ 28624487 (+)
slc1a1 slc1a1,LOC107691854,LOC107561518,LOC107659129,LOC107552979 coding downstream 264164 28739191 ~ 28758078 (+)
phf23 phf23,LOC108413721,LOC107687050,LOC107687030,LOC107561685,LOC107593540 coding downstream 332965 28807992 ~ 28814308 (+)
LOC103046260 plscr3,LOC103046260,LOC107593564,LOC107687051,LOC107754701,LOC107561702,LOC108267765 coding downstream 353044 28828071 ~ 28844665 (+)
G144953 sec24d,LOC103036498 non-coding upstream 73781 28381692 ~ 28384123 (+)
G144948 NA non-coding upstream 80848 28375064 ~ 28377056 (+)
G144899 NA non-coding upstream 82920 28282468 ~ 28374984 (+)
G144866 NA non-coding upstream 487399 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 546777 27910696 ~ 27911127 (+)
G144969 frem1 non-coding downstream 93366 28568393 ~ 28570000 (+)
G145007 NA non-coding downstream 299670 28774697 ~ 28775779 (+)
G145009 ctdnep1a,LOC108413724,LOC108414899,LOC108260181,LOC105906669 non-coding downstream 300855 28775882 ~ 28778448 (+)
G145013 NA non-coding downstream 319195 28794222 ~ 28796628 (+)
G145105 NA non-coding downstream 372918 28847945 ~ 28850850 (+)
G144671 NA other upstream 1249313 27206742 ~ 27208591 (+)
G144613 NA other upstream 1645777 26807716 ~ 26812127 (+)
G144584 NA other upstream 1703462 26750835 ~ 26754442 (+)
G144372 NA other upstream 2669062 25786737 ~ 25788842 (+)
G144333 NA other upstream 2803654 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 151017 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 680698 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 953998 29429025 ~ 29432026 (+)
G145438 NA other downstream 1703177 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 1854431 30329458 ~ 30331665 (+)

Expression


Co-expression Network