adgra3 (adgra3,LOC107691845)


Basic Information

Item Value
gene id adgra3
gene name adgra3,LOC107691845
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 28030757 ~ 28084025 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255175.3
gctctaaatattcattaattatCCATGGTTAGTCCatggttagttttttttctctgaggggcaacaaaacacagcacactCCAGTTTGTTTGATGTATTTTCTCTCtcagaaacacttttttttagcgTTTTAAGATTTAGTCTTAGTTAACTCTGGAGCGATGCAGTGTTGTGGGATCGGGAACCGAGGCGCCAGGAAAACAAAGGAGACGGCGGATCTCCCACCTCCTCGCCCCTGCCTTAATGTGGAGCACACAAAGCCATGTTAGTTAGCTTCTAAGCAAGCTAACTCCAAACCCAAacagctgttttttgttttgtttgttttttggggggatACTACGGCCATTTTAACATGACCTGAGTCCAACATAAAGCATATAAAGCCTGTCTTTTAGTTTTGTAAGCTAACGTTACAGTTTTGTTGTCAGGGTCTATTTAacgctaggttagctaggtaGCGTTAATAGTTAGTTTGCTAGGTTATCTTAACTTAATAGGTTAGCGAAGCTAAGCTAGTTAGAGCTAACCTAtagcgttagctaactagctaacttggACCCAGCAGGGCTTGTTTATCTTTCTCCAGAGATTtaattagcatgttagcttgtTAATTAAAGACCGCCCCCGCTTCTCCCCGTCTGTATCGCCCGAGAGAAGCGAGAAATGTCGGTTTGCGGTGTCTGGCCGCTGCTCCTGGTTCTGGGGCTGTTTGGAGGCGCAGACTCTGCTCTATCATCTGACTGTAAAACCTACGATGAGCGATCCCGAAACGCGGGTAAAGGCTCGCCGTCAGTGGCCACCGCGGACAGGAAAGTGGTGTGCAGCAACATGGAGCTCCTTCAGGTGCTGCCCCCGGAGTCCTTTCCCAACAGGACAGTCACACTgaTTTTGAGCAACAATAAAATCCAGGATCTACTAAATGGCTCCTTTGCTGGTTTATCTACGCTTGAGAGACTGGATATAAAGAATAACATCATCAGTCGCATTGAGCCGGGAGCCTTCCTTGGACTTACTGCTCTTAAAAGACTggattTGTCCAATAACCGCATCGGCTGCCTCAATGTGGATATATTCAAAGGCCTTACAAATCTTGTCAAACTcaatCTTTCAGGCAACATGTTTTCATCTCTGTCTCAAGGGACCTTTGACAGCCTCGTATCTCTGAAAACACTgGAGTTTCAGAGCCCCTATCTGCTGTGTGACTGTAATCTGCAATGGCTGCTGCGCTGGATCAAAGAGAAGAGTGTAGGCGTGAAGGACACACACTGCTCCTACCCTCGCTCTCTGCAGGGTCTGCTCGTAACATCCATCAAGCCTGAAACTCTAACCTGTGATGCACCCCTGGAGCTTCCTTCTTTCCAGATGACTCCATCCCAGCATCAGATCGTCTTCCAGGGGGACAGCCTGCCCTTCCAGTGCATGGCCTCCTTTGTGGATGAGGATATGCAGGTGCTCTGGTACCAGGATGGAAAAATGGTGGAGCCTGATGCTACTCAGGGCATCTACATAGAGAAGAGCATGGTGCAGAACTGCTCCCTCATTGCCAGTGCCTTGACCATCTCCAACATTCAGCCAGGCTTCACAGGGGACTGGGAGTGCCGTGTGAGGACCAGCCGAGGCAACAACACCCGCACCGTCCACATCGTGGTTCTGGAGAGCTCTGCCAAGTACTGTGCTCCTGAAAGGGTTTCCAACAACAAGGGAGAGTACAGATGGCCACGCACACTGGCTGGCATCACCGCGTACCTGCCCTGTGCACGGCAGGTGACTGGTACAGGCATCTACTCGGGCAGCTCGGCTGAAGACCGCCGTGCAAGGAGGCGCTGTGACCGCACTGGCCACTGGGCCGAAGAGGACTACTCCCGCTGCGAGTACATGAAGGACACCACCCGCGTTCTCCATATCATCAACCAGATGGCTCTGAACCTGACCAATGCCGTGCACACAGCCCAGCAGCTCCTGGCTTATACTGTGGAAGCTCCGAACTTCTCTGACAAGGTGGATGTGATCTTTGTTGCCGAGATGATTGAGAAGATTGGGACGTTTGCTGAAAAATATAAAGAGCTAGGGGACGTGATGGTGGATATCTCCAGTAATCTGATGCTGACTGATGAGCGAGTGTTGTGGATGGCACAGAAGGAGGCGCGAGCTTGTTCCCGTATCGTTGAGAGTCTGCAGAAGATTGCTGTACTCCGATTGGCCAGTGGATCTTACTTTACTAACTCCCACAACATTGCAGTAGAAGCACATGTGATCAAGGCCAGCAGCTTCAACGGCATGACCTGCACATTGTTCCAGAAGGTGGCGCCAGAGCGCACTTTGATTCCTCACCTCGGAGCTCTAAACCCTGATATGAACCTGGACCGCCAACTCAGCTTTAAATGCAATGTCACCAGCAATCTCTCAGCCTTGGCATTAAAGAACACAATAGTGGAGGCATCAGTCCAGCTTCCTCCagctctcttctcctctctgctCAGCCCGGGTCAGAGTGATGACACAGTCTATAAACTTCAGCTTCTTGCTTTCCGCAATGGCAAACTCTTCCCTCCCACTGGCAACTCAAccatgctggctgagggcaGCAAGAGGAGAAGCGTGGTCACACCTGTGATCCTCACCAAGATCGAGGGCGTCTCATTAAAGCCTCTGCGCAGTCCGGTGAATGTGACTCTGCGTCGTTTCCTGCACGGCTCGGACCCCGTGGCCGCCCGTTGGGATTTCGGTGTGCTGGACGGTCAGGGTGGCTGGCAGTCTGAAGGCTGCCGGATCCTTCATCACGATgataatttcactacactgtccTGTGACTCACTCAGTAACTACGCTCTGTTGATGGATCTGAGTAGGACAGAAATCGTCACATACAGCTTCAAGCCTCTCCACCCAGTCATTTATGCCACAGCTATTGTACTGGTGCTCTGTCTGCTGGCCATTATAGTCAGCTACATCTACCACCACAGGTCTGTGCGTGTCAGCAAGAAGAGCTGGCACATGCTGGTTAACCTGTGTCTGCATATTCTCCTCACCTGTGCTGCATTTGCTGGGGGCATCAACCAGACTCGCTATGCCAGTGTGTGCCAAGCGGTGGGAATAGTGCTGCACTACTCTACATTGGCTACAGCCCTGTGGTCAGGAGTTACTGCAAGGAACATCTACAAACAGCTCACGCGCAAGACCAAACAATATGAGGAACTGGATGAACCTCCACCTCCCCCCAGACCCATGCTGAGATTCTATTTGATTGGTGGTGGAATACCGATCATTGTTTGTGGCATAACTGCAGCTGCTAACATCAAGAACTACGGCAGTCGAACCAGCGCTCCTTACTGTTGGATGGCTTGGGAGCCCAGTCTCGGAGCGTTTTACGGTCCAGCGGCCTTCATCGTCTTTGTGGACTGCATGTACTTCCTGAGCATCCTCCTTCAGCTGCGTCGCCATCCTGAGAGACGCTTTGAACTCAAAGAACAGTCTGAAGAGCAGCAGCGGCTGTCCGTGGCCGAGATTGCCGAGGTCCCCCCTGCGAATGGGGACTCGTCGTCTGTGTCTGGCATGCAGCCAGTGTCCCTGTCAGCGCTGGAGAACGAGCATACGTTTGCCGCTCAGCTCCTCGGCGTGGCCGGAGCCTTGGCTCTTTATATAGTGCTTTGGATATTTGGCGCGTTGGCTGTTTCTCAGGAGCATCCGATAGATCTGGTGTTCGCTTGCCTTTTTGGAGTAGCTGCTTTGGCGCTGGGCGCGTTCCTAGTGGCCCGTCACTGCATCAGTCGCCAAGACATGCGCCGGCACTGGTCACGAGCTTGCTGCCTCGTTCGAAGGAACTACGCGGTCCAAGTTGACGCCCTGCTTGTGCCGTTGCCAGGGGCTGCTGGGAGTGAATCAGCCGCTACGGGCAATGGGGAGTCTGTAAGGTGTCCTGCTAGTGGCACTGAATCCTCATGCACCAACAAGAGCGCGCCAAGTCTGCGCAATTCTAACCAGGGCTGCAAGTTAACCAATCTGCAGGTGGAAGCGGCCCAGTGCAAGTCAATCCCTGCTCCGTCCAATGGTGTCCCTCTGCTGGACAACAGCTTAACAGAACACTCGTTGGATAATGAGATCAAGATGCACGTCACGCCTGTTGAGGTCCAGTATCGCCCCGTTGGCAACAACGGTCACCCCGGGATGGGGAGCTCAAGTGTCAACGGACATTCGGTACGGCACCACAAGAACCGGGCACGGGCGCACCGAGCTAGCCGCCTGACTGTTTTACGCGAGTATGCTTATGACGTGCCCACCAGTGTGGAGGGAAGCGTCCAGAGTGCCCCTCAAAGACGGCATCACCACGACAGCCTGCATGCCCGCAACAGCCGGCGAGCAGCCTACTTGGCTTACCGCGAGCGGCAGCAGAGCCAGCTTCAGCAGGACAGCAGCGATGCAAGTGCTAGCCTGCCGCGCCGCTCCCGCCATTTCGACAGAAACGCCAACAAGGGCGGGGGCATTAACCTTGGCAACGGCCGCCTGGGAAAAAGCCTCGGGAATGGACTTACAGGCAGCCTGGGAAACGGCCTCGGCAGCAGCCAAAGCAACAGCCAAAGCAATGGAGTCAGTAACGGGtgtgcagtagtagtagcagcagcagtaggagAGGGAGCTGAGACTGAATTATCCAGCCCAGTTAAAGACTGCCCAAAGCAGCCCCTCCCTGTTGAACTGGAGGTGCAGCCCAAATCGTACGGGCTGAACTTAGCCTCAGAGAACGGACCGAACGCTAAAAACTCAGAAAGGCCACAGAATTTGCCGTATCTGAGTATAGAGAATTCAGGCAGCATTAAGACTGGTCTATGGAAACATGAAACTACCGTGTAGCAAACAACGTTCCCTCCTCATAGActctttatacttttactttttcagtATAACTGTGaacttcctgtttttttttataattattttagacTATATAGTTtaaatgcaggaaaaaaaagaatttatatTTGAACTGTTTGTATTCAAAGttgaaaaaaactataaactattagTATACCACTTGCCAATTGTTATCAACGATCTCATCAAAAGGTCtatttttgtactgtttttctCCTTTCCGAATGTAAATGACAAATGATTTTGTATGTGAAAACACACAGCGTTCTTGCTGTGCATCCTATGGGTATAGGTCTAGTGACTAGATCATCTTAATGGATTAGATCTTATGCTCTAACCTGTTTTGGATtaattaaactgttaaactgtt

Function

symbol description
adgra3 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within convergent extension involved in gastrulation; motor neuron migration; and regulation of establishment of planar polarity. Located in plasma membrane. Is expressed in several structures, including brain; liver; otic vesicle; pectoral fin; and pleuroperitoneal region. Orthologous to human ADGRA3 (adhesion G protein-coupled receptor A3).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K08462 ADGRA3, GPR125; adhesion G protein-coupled receptor A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255175.3 True 5245 mRNA 0.51 19 28030757 28084025

Neighbor

gene id symbol gene type direction distance location
LOC111194351 NA coding upstream 725082 27301866 ~ 27305675 (+)
LOC111194356 NA coding upstream 779634 27248351 ~ 27251123 (+)
ndufs2 ndufs2 coding upstream 914913 27100824 ~ 27115844 (+)
focad focad,LOC101469292,LOC104964325 coding upstream 995678 26935083 ~ 27035079 (+)
rpl34 rpl34,LOC107566275,LOC107681344,LOC107573163 coding upstream 1423566 26602015 ~ 26607191 (+)
LOC103045778 kcnip4,LOC100711851,LOC102215477 coding downstream 215471 28299496 ~ 28368962 (+)
LOC103035875 LOC108437090 coding downstream 327288 28411313 ~ 28445089 (+)
LOC103035569 NA coding downstream 373879 28457904 ~ 28475027 (+)
LOC103035264 LOC108437087 coding downstream 412615 28496640 ~ 28564802 (+)
LOC103034936 LOC108437088 coding downstream 536704 28620729 ~ 28624487 (+)
G144866 NA non-coding upstream 60252 27969493 ~ 27970505 (+)
G144858 NA non-coding upstream 119630 27910696 ~ 27911127 (+)
G144856 NA non-coding upstream 143207 27857807 ~ 27887550 (+)
G144845 NA non-coding upstream 279313 27751238 ~ 27751444 (+)
G144833 NA non-coding upstream 372907 27655183 ~ 27657850 (+)
G144899 NA non-coding downstream 198443 28282468 ~ 28374984 (+)
G144948 NA non-coding downstream 291039 28375064 ~ 28377056 (+)
G144953 sec24d,LOC103036498 non-coding downstream 297667 28381692 ~ 28384123 (+)
G144969 frem1 non-coding downstream 484368 28568393 ~ 28570000 (+)
G145007 NA non-coding downstream 690672 28774697 ~ 28775779 (+)
G144671 NA other upstream 822166 27206742 ~ 27208591 (+)
G144613 NA other upstream 1218630 26807716 ~ 26812127 (+)
G144584 NA other upstream 1276315 26750835 ~ 26754442 (+)
G144372 NA other upstream 2241915 25786737 ~ 25788842 (+)
G144333 NA other upstream 2376507 25653006 ~ 25654250 (+)
LOC103038323 tspan5a,LOC108437089,LOC103038323,LOC107740922,LOC107561515,LOC107691852,LOC107659128 other downstream 542019 28626044 ~ 28658921 (+)
LOC103041452 ap1s1,LOC107666294,LOC105921790,LOC107593725,LOC103148860,LOC108443977 other downstream 1071700 29155725 ~ 29170570 (+)
LOC111194370 LOC108434654 other downstream 1345000 29429025 ~ 29432026 (+)
G145438 NA other downstream 2094179 30178204 ~ 30178724 (+)
G145457 cyp26b1,LOC103033177,LOC108434641,LOC107750587,LOC107691896,LOC108267534,LOC107588193 other downstream 2245433 30329458 ~ 30331665 (+)

Expression


Co-expression Network