LOC103036193 (ybx2)


Basic Information

Item Value
gene id LOC103036193
gene name ybx2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24713729 ~ 24733773 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255724.3
ATAAAAAGTTTGAGGTGGAGGCTCGAGCAGAGTTTGGCGAGTAGGAGGGAGGGGGTGAACCGTGCTAACGATTTAccgagagaggggaaaaaaaatgaccGACACAGACGTTCAGGAGGCTCCTCCGTCAGCAGCGGAGACCCAGGAGGACCTGCCGCCGGAGAGGAAAGTAATCGCTACTCTAGTGCAGGGAACTGTGAAGTGGTTCAACGTACGAAATGGATATGGATTTATCAACAgAAATGACACCAAAGAAGATGTGTTTGTACACCAGactgCCATTAAGAAAAACAACCCTAGGAAATTCCTCAGAAGTGTGGGAGATGGGGAAATTGTGGAGTTTGATGTAGTTGAGGCAACTAAAGGCTCAGAAGCTGCCAATGTGACCGGTCCAGGTGGGGTGCCTGTCAAAGGTAGTCGCTATGCTCCCAACAAGCGCAGATTCCGCAGACGCTTCTTCCCGCGGAACGCAAGGCCTGGCCAGGTGGAGGGGAAGGCTGGAGATTCTGGTGCTCTCACATCTGAGGGAGAAGGCGGAGAAAACGGCACCACTCAGCCAGGGGTACGCCGGCGTCGTCCACGTAGGAGACCTGTTTCACAGCAAGGCGAGGAAGAATCGGGGGATCAGAAAATTGAGATGGCAGATGGTGTCCAGCAGAGGCCACCAGCACGTAGGTTCAGACCTCGGTACCGCAGACCATTCCGTCCACGTCCACCAcctggagagggtgagcaggaAGCCACACCTGCTGAAGGCCAGAAGGAAGCTTCAAAAGAGGGCCAGAGCAATGGGGAGCCAACTGACGGCCAGGCCCAGAAACCCCGCCGACAGTTCAGCCGCCGGAGACAGAGGAACTCTGACTCCACTGCATCCAAAGACGGTCAAGAGAAGTCTGAACAAGCAGACCCTGCATCCCCTGTTCAGTCTTCAAAGCCACCTGATGCCAAAGCCTCCCCAAAAAGCTCCCCAAAACAGTCCCCAAAAGCATCTTCTCCAAAATCAGCTGAGGTTCCTGCTCCCCCTGCGGAGTGACTTCTGTGACCTGGAGGGAATCGAGTGACCCCGGGAAGAGGTCCCCGGGTGGGTTAGCTTGGGTGGATGGACCTCGTCTGTCTCAAACACACAACCGACGTGCACACAACTATTCCCTCCCCCCGCACCTCTTGCCTCTATGCTTTAGTGTGGGTCAGTCATTTGTATTGGGTGGaaggatggagaaagagagaaggaagggGGAGGAGGGGTGACGAgtatatttggaatttaaaaTCTTTAGGGGGATTACacacagaaaatatataattgctCAATTCCCAGACTATTTGAATCATCTCCCCCTGTAGTTCAGTGAGATGGGTGTGAGcagctaaaaaaagaaaaccagttTGGCCCTTTAAGTTTGACAatcagggggaaaaaaaaactaaataaaagtgtaagtGGGGtggggtgtgtagtgtatgCCTCCACTTCTTACCAGTGTCTAGATGAGAATTGCTACAGGTCTATTCAAAATGTACGAACtggttaatttttgttttttttcttagtattttttttttctctctttccctttt

Function

symbol description
ybx2 Predicted to enable several functions, including chromatin binding activity; mRNA 3'-UTR binding activity; and ribonucleoprotein complex binding activity. Predicted to be involved in positive regulation of cold-induced thermogenesis and regulation of gene expression. Predicted to act upstream of or within germ cell development; negative regulation of binding activity; and posttranscriptional regulation of gene expression. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in nucleus.

NR:

description
PREDICTED: Y-box-binding protein 2

GO: NA

KEGG:

id description
K09277 YBX2; Y-box-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255724.3 True 1578 mRNA 0.51 10 24713729 24733773

Neighbor

gene id symbol gene type direction distance location
gps2 gps2,LOC106608669 coding upstream 9301 24693102 ~ 24704428 (+)
LOC103038819 H2AFZ,h2afvb,LOC103038819,LOC105895420,LOC102200939,LOC107706756 coding upstream 24143 24686265 ~ 24689586 (+)
ddit4l ddit4l coding upstream 52622 24657413 ~ 24661107 (+)
LOC111194343 NA coding upstream 65004 24616111 ~ 24648725 (+)
LOC103039837 nfib coding upstream 573527 24105335 ~ 24140202 (+)
LOC103037427 NA coding downstream 35574 24769347 ~ 24781192 (+)
LOC103035878 NA coding downstream 49332 24783105 ~ 24802986 (+)
LOC103035573 NA coding downstream 77204 24810977 ~ 24813754 (+)
LOC103033974 NA coding downstream 161840 24895613 ~ 24911351 (+)
LOC103047006 NA coding downstream 199598 24933371 ~ 24949400 (+)
G144014 NA non-coding upstream 23554 24689795 ~ 24690175 (+)
G144000 NA non-coding upstream 285231 24428062 ~ 24428498 (+)
G143973 NA non-coding upstream 430579 24282034 ~ 24283150 (+)
G143964 NA non-coding upstream 523847 24189634 ~ 24189882 (+)
G143928 NA non-coding upstream 641833 24066946 ~ 24071896 (+)
G144038 NA non-coding downstream 82091 24815864 ~ 24816084 (+)
G144113 NA non-coding downstream 117117 24850890 ~ 24851126 (+)
G144125 NA non-coding downstream 183913 24917686 ~ 24917987 (+)
G144132 NA non-coding downstream 202052 24935825 ~ 24936380 (+)
G144134 NA non-coding downstream 202642 24936415 ~ 24936800 (+)
G144017 NA other upstream 2196 24707083 ~ 24711533 (+)
ppp3ca ppp3ca,LOC103369319 other upstream 111327 24436379 ~ 24602402 (+)
G143836 NA other upstream 797647 23827948 ~ 23916082 (+)
LOC111194174 NA other upstream 1306835 23403688 ~ 23406894 (+)
LOC111194251 NA other upstream 1318489 23385168 ~ 23395240 (+)
LOC111188189 NA other downstream 122999 24856772 ~ 24876737 (+)
LOC111194253 NA other downstream 159219 24892992 ~ 24894553 (+)
G144146 men1,LOC107660721 other downstream 265000 24998773 ~ 25004171 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other downstream 642225 25375998 ~ 25378765 (+)
G144290 NA other downstream 738350 25472123 ~ 25474694 (+)

Expression


Co-expression Network