gps2 (gps2,LOC106608669)


Basic Information

Item Value
gene id gps2
gene name gps2,LOC106608669
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24693102 ~ 24704428 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007255727.3
GGCCTGGAAAGGGGAAGTTAGTGAGCTGAGGGTGACAGGAAGCGGTTTGTTCCAGTATCAAACAAACCCTGAAGTTCCAACGAAAAACTGAACAGACTCACTTATATCTGCTCTGGCCGCCGAGAGGagtattatatacatttaccCAGCGCTCCCGTGGGATTTATAAGATACAAAGCTGGCCCCTCCACTACCCGTCACCATGCCTGCTCTACTGGAGAGACCCAAACTGTCCAATGCGATGGCCAGAGCTCTGCACAAACACATcatgagggagagggagagaaaaagacaagAGGAGGAAGAAGTGGATAAGATGATGGAGCAGAAGatgaaagaggaagaagagaggaaaagaacaAAAGAGATGGAGGAAAGAATGTCCTTAGAGGAGACTAAAGAGCAGGTTCAGAAAATGGGGCAGAAACTGCAGGGTTTGCAGGAGGAAAAGCACCAGCTATTTCTACAACTTAAAAAAGTCCTCCATGAAGAAGAGAAGAGGCGGAGAAAGGAGCAAAGTGATATTACTACACTGACCTCAGCAAGTTACCAGCCTAGTATACCCCTGCACTCAGGGCAGCACCTACTCAGCCTACAAGGCAGTCCTGTTAGTCACAGTAGACCTGGAGGTCTTTTAGCAGAACGTGGAAAACAGTTGTTTCAGACACCTGGCATTCCTGGTCGTCACTTCCCTGGTCAGCCTAGTTTCACTCAAGGCTCCTCTGAGCATGGACAGTTTTCAGGAAGCCCTGCAGTACACGAGTCCTATGCTGTCACACAGACTCAGCACCCTTCCACCTACGGCCCAGGAGCATCGGTTCCCATCAGCTTTTCTAGCAGTTCACAGATCAGagGTGCATCAGCTTTCCAGACCATGCCGTACCTGTCCCACCAGCCACAGGGCTATGCTGTCCACAGCCACTTCACTTCACAGCCAGGCTTCATCCCCACTGCTACCATCCCTCTTCAGAAGCAGTTGGAACATGCTAATCAACAGTCTGGCTTCACTGACTCGggtgCTCTGAGGCCCATGCACCCACAGGCTATACATGTTAGCGCTGCAGGACTTCTGCCCACACCTTCAATGACAGTACAGATCCCCACAGCAAAgGCCCCCTTTCAGAGCTCTCCTCAGCCAGCTCCTCGACATGCTTTCCTCTCCCACCCTCAAGCTGGACAGAGATTTTATCACCATAGCAAGTAACCAAACATTTGATGACAACCAAAACATGTAAAGATTTTGTAAATGTGGCAAGTGATCAGTTACAAACAACTTTTGAaagattttatgatattttcACTGACTTATTCAGAATCAGTCATTACTGTTTTCTAAGAAGGCAACAGCATATTAGTGATTCTTAAATTTGCTGTAAATTACAAATTTACATTGACACATTTACGGCATTAAAACTCAAGTATAAGGCCAAGCTATCTTTTTAGAcaaagatattttctcttttggctttttgattaaaaaaatataataaaaattagtaATGTGCATTTTGTTTGTTCTGTACTATTTGTActtctgtacttattttttcctttaatgtatatattttttgatgattGTTGAAAAGACATAATTAAGACCTTTGTTTCAATATGATGAaatatttgttttcagtttacaacaaagtaaacaaaatacaccaatcagccataatatTAGCACCACCTGCCTAATATTGAGTATGTCTACAAGGTCTGAAAGTGTTTTGTGGTATCCGACACAAAGATGTTAACAGTAGATCCTTTAACTTCTGTAATCTGTAAGGTGGGGCCTACAAGGTTTGCAAAAATGAGCCTTGGGTGTTCTTAATCCTGTCCTCAGTTCACTGGCTGTCCTTTTCACTGGACTATTTTTGGTCtgtactgaccactgcataccaAAAACCCCACAAGACCTGTccactgttttggagataatcTGACCTTGGTCAACCAGCCATCACAGTGTCTCACATCCTCATGATTTACCTAgtctttctgtttttaacaATTACACATACAGTTTCGACTGTTCACTCAATGCATAATATATCCCAGCTCTTTCCTGATGCCACAGGATATTAAAATAGTCATTGTTCTTCACTTCACCTGTTAGTGGTGCTAATATTATGGCTAAATGCTGTAGATTAAAATGGTTCCtgagtggatttttttttatataaacgtCGAATTTGAGTAATACAGACTTCTTTAAAATATGGGAAGATTGCcaagatagataaataaataactgtttattgcCTTTGCAATATATGTTCATGGGTACATTGCAGTTGCTCTTACCCGTTATTAAAGTTATTTGAGAAGAGTCAGTGCTTTTTCTTTAGTCTTGTAGACAATAACTCGTGGTCAATTGACAGGTGAGTTGAGCCAGATGCGTTTGTGTGGGAAAAgcacaaaactgtgctgaaaAACAGCTGTCCAGGAGCAAGATTTGCCACCTATGCAGTAACACTTGGTGTTATTTGACCAACTATTGCTTGATTAGTTGTCAGGCTCACAATTACTAGCacttttgattacatttttagaaCCAACACTGAGCAAATTCTGAGCCCACTCCTACATTCAGATCCACGGATCTCAAAGGACCAGATACAGTAAGCTTTCTAATTTTCTATGCAGGTTTTGAGGCTTTATACGATGAACAAAACTTAAGTGCACCCTTGTGAAAAAACTAATTACCTTATTCAGATGTGTTGGGAGCTGAAACACACCCAAACATACATAGTTCAGGTTATTCCATGTGACTAGTAAAAATgatagttttattctatacaattacatgtttatttaatgaatcCACGTATATGCACTGGCACCATTTTTGCATTTGTTGATTGTTCTTTGAAGGTTTTCTAATATAGAAATCCTACAAGACATTAATTAGCTCAAAATGCAGctgcaatcattttttttcttcatctgttGTCTACAAATTTTCCAAATTCTTGAGATTACAGAATTGGAGGTATAGATGGTGTTGACAAATTTACTGTTGTTATTACACTGATGTGCCAAAATCCATAGAAAAGTatctagtatcatgtcccatagCTTGTAATATGTCACATGGAAAGCCTTCTGCATTTTTCACCATAGGTATCCACATGcagttattttccttttttcacaAAAGAAAAATGGTTTCCTTAAGAATAAATAGATCCCAATAATTTCCTTGAATGACTGAACACATGTAACTGCTTGATTTTATTTAAGACTCTGCCATAGCTACAGTTTCAAAAGAAGAAATgttactcaataaaaaaaacagttttaaatacagctctttttaatttaatacagaaTATTTGCTTGTTTCCATCAAGGGCTTCAATAATTCTAAACAATGACAGCATGTAGCTGTGCTGCACCGATGAATCCCCCTCAGacactaaaaacaaaaaggcaAGGTTCATGTGCTCTTTTTAATGTTGGGCTGAGGGATTCTCTTGGTTTTATACAAATTGTTTATCACAGTCATGGAACAAACAGATGTTTTGCTCATATATGAAagtgaaatgagaaatggttttGACACCATGCTCAATATCTGAGCCtaccaaacaataaaataaaatgaattcaaAGTGTAACCTTTGTCAGTACAGTCTCATTTGACCGACAGTCTACGTGGCTGGGATGTAAATGTATGACAATGATGGGATGTCATTTCATCATTATAAGCCCAACAACATACTGAGGCCAAACCATATGCACACTATACtcatttatactattttattttctagctGAATCTCCTTTTCTGTAACCCTTTTAGTGTAGTTCTGAAGACTTGCTGAACCCACAATTCTATGTGATGCTCCTTATTATAATGTGTAATGGGTCTaaatctatctttctatctgtctgtgttgAGGTGGCAACTCAACCTGTATCCTTTGTATTTTGACTATTGTGAGGTAAAAGTAGTTGACTTAGCCCTCCTCCAGCGAAGGGATTACACCACGGCCTACTCCACACGGCCTTCGCTCCTGTCTTTTACTGCAGAATGTGGCTTTCGCTGCaatctgtaataaaataagTCACTAAACACAGGTTTAGCTACGTACTTGAGATCCCAATTGAAAGTGGCAAAGAATGTATGAAAGGGGTGGAACTGGGACAGATGGAAATATTccgaaaaagaaataaaa

Function

symbol description
gps2 Orthologous to human GPS2 (G protein pathway suppressor 2).

NR:

description
PREDICTED: G protein pathway suppressor 2 isoform X4

GO: NA

KEGG:

id description
K15307 GPS2; G protein pathway suppressor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007255727.3 True 4178 mRNA 0.39 11 24693102 24704428

Neighbor

gene id symbol gene type direction distance location
LOC103038819 H2AFZ,h2afvb,LOC103038819,LOC105895420,LOC102200939,LOC107706756 coding upstream 3516 24686265 ~ 24689586 (+)
ddit4l ddit4l coding upstream 31995 24657413 ~ 24661107 (+)
LOC111194343 NA coding upstream 44377 24616111 ~ 24648725 (+)
LOC103039837 nfib coding upstream 552900 24105335 ~ 24140202 (+)
arl5b arl5b,LOC103034648,LOC100708858,LOC107591025,LOC103373092 coding upstream 721530 23946103 ~ 23971572 (+)
LOC103036193 ybx2 coding downstream 9301 24713729 ~ 24733773 (+)
LOC103037427 NA coding downstream 64919 24769347 ~ 24781192 (+)
LOC103035878 NA coding downstream 78677 24783105 ~ 24802986 (+)
LOC103035573 NA coding downstream 106549 24810977 ~ 24813754 (+)
LOC103033974 NA coding downstream 191185 24895613 ~ 24911351 (+)
G144014 NA non-coding upstream 2927 24689795 ~ 24690175 (+)
G144000 NA non-coding upstream 264604 24428062 ~ 24428498 (+)
G143973 NA non-coding upstream 409952 24282034 ~ 24283150 (+)
G143964 NA non-coding upstream 503220 24189634 ~ 24189882 (+)
G143928 NA non-coding upstream 621206 24066946 ~ 24071896 (+)
G144038 NA non-coding downstream 111436 24815864 ~ 24816084 (+)
G144113 NA non-coding downstream 146462 24850890 ~ 24851126 (+)
G144125 NA non-coding downstream 213258 24917686 ~ 24917987 (+)
G144132 NA non-coding downstream 231397 24935825 ~ 24936380 (+)
G144134 NA non-coding downstream 231987 24936415 ~ 24936800 (+)
ppp3ca ppp3ca,LOC103369319 other upstream 90700 24436379 ~ 24602402 (+)
G143836 NA other upstream 777020 23827948 ~ 23916082 (+)
LOC111194174 NA other upstream 1286208 23403688 ~ 23406894 (+)
LOC111194251 NA other upstream 1297862 23385168 ~ 23395240 (+)
G143324 NA other upstream 2082655 22535685 ~ 22610447 (+)
G144017 NA other downstream 2655 24707083 ~ 24711533 (+)
LOC111188189 NA other downstream 152344 24856772 ~ 24876737 (+)
LOC111194253 NA other downstream 188564 24892992 ~ 24894553 (+)
G144146 men1,LOC107660721 other downstream 294345 24998773 ~ 25004171 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other downstream 671570 25375998 ~ 25378765 (+)

Expression


Co-expression Network