LOC103040380 (LOC108438941)


Basic Information

Item Value
gene id LOC103040380
gene name LOC108438941
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6828752 ~ 6840206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258037.3
aGTAAAAAGAAACGAAAATGTCTGAAGAGAGCAGGACTATCAACTGTCACTTTAAGGCAGTTGCAGTTGAAGGGTCATTTCTATGTTGTTGCTACAGTATTCTAGGTGGTTTCCATTATGTTGTTAGTTGGTTGTTATAGTGTAACTAAGTGATTGGTTACTGTGGTCTTCCAGGCGGTGGCTTTGGTGTtgttagatggttgctgtgatatctcAGGTGACAGTTATgttggtggttggttggttcatTTTAGGTAGATGATGAaatggtgttgctgagtggttgctgTGATTTCCCAGACAGTTGATATgttgttactaggtggttgctatggtattactGTAAAAGTGATTTATAGGTGGATTATTATAGTGTTGCTATAGTGAACTGCaatgttgttgctatggtatcccagatggCTGATTTGGTCTTCTTAATTGGATGCTATATGGGTGCTACAGTGTTGCAAGGCGATTGCTATAATATTTAAGGCAGTTAAATATGATGTTGCTTAGTAGATGCTAGGATGTTGGTAGGCAGTTGTTAATGGTTGTGTGTTAATAGTGTATGTGTATCATTGTTAAATTTttgaatacaaaaataatacatcATAATCTTTGGCCAACGGTTCTAAACCAATTGGTTTAGCATATCTTGTtgagttccacagggttctcTTTTAGGGCCTATTAAATGTAAGGAAATAACTATAGAACTGTAGTTATAAAAGTAAAAGGATCATGAAAAAGCAACAAATGTTTAGAGGTCATCTGGCATATGTTCCCGTACCACCAGTGCTACATGTACCACAGTTTTAGAACCCACTGTTATCTGCTTATTTCCCTTAGATCACATCTACCAATATGGGTTCCATGGAGGAGGTGCTGACGTGCCCCATGTGTCGAGACCTGTTCGGCCCCGGGTACCCCCTACCCTGTGGTCACAGCTTCTGTCCCAACTGCGTGTGGGATATCTGGGGGCAGACTCAGGGCTCCAGTTCCATCAGAGGGCGCTTTGCCTGCCCACAGTGCCAGGAGGACCAGGCCGTGGTGGCCTGCGACTGCTGTCCAGAGGAGAACGGGGAAGCAGGATCAGCGTGTTCTGCTGTGAAGAGCTGTCTGCGCTGCGAGGTCTCGCTGTGTGAACAGCACCTGCAGCCTCACCTGCAGTGCCCTGCTTACAGCACTCACCTGCTGGTGGATCCTCTTATGGACATGTCCCACCGCAGGTGTCCTGCTCATCGGGAGGTGTTCCGCTATTACTGCCTGGACGACAGGGAGTATATTTGTGCAGACTGCATCCTGGAGGGCAGCCATGCTCAGCACCAGGTTAAGGGTCTGAGAAATCTGCAGGAGGATTACAAGGTCTCAGTGCAGTCCCTTTTCAACCAGGCAGAGGACAAGATGAAGAGCGGGGCGAGGATTCTTCAGGAGCATGAGAAATCCAGCAGTAATTTAATAGGCTCGTTTGTGGCAGATGACTCTCAGATGGTGCGGTTGGGTTCAGCCCTGCAGGCCCAGGTTGACATCCTGGTGGAGGCCCTGAAGAATGTAAATGAGCAGGAGAGGCAGCTGGCCTTCAGTCGGCTTGAGGAGGACCTGGGCAGAACTAAAGGGGGCCTGGAGCAGACGGAAAGCGCCCATCGCTATCTAGGCAGCCTGCTGCAGGAGACCGACCCCTTTCTGCTCATCTGGgCATTTCAGTCTGAGCATTCAAAGCTTGTGGCTGATCTCACCTCGCCGCTGTTTACTCCGGGACAGCCGAGCATGAATAAGAAGCGCATTCTGGAACATGTGGAGCAGAAATACAGGGAATTTATATCCGAGACACTGAGATGCCTTATTGAGCTCAAGAGAGATCTCTtaagcAGTCCTTTAACACTGGACACCAACTCTGCCCATCAACTGCTAAGTGTTTCTGATGACCAGCTGTCAGTGAAGAGGCTCAAATCTCGATTACCTCACACTGATCATCCTGACCGCTTCGACCACTGGTCTCAGGTCGTCACTAACCAAACCTTCTCTTCTGGAACTCACTACTGGGAACTAGAAGCAGAGGGATTCTGGGATATAGCAGTAACTTACCACAGCATTGACAGAAAAGGCAAGGAAGGAACAGCCTTTGGGTGCAATAAGGTGTCATGGAGCCTGACTCAGCAGCATGACAGAAAGCTTGCGGCGTGGCACGACCGAAAGAAAACACGTCTCTCTGCTAAGATGTGCGGAAGCCGATTGGCGATCTCGCTGGACTATGCCTCCGGATCGATCACCTTCTCAGAGGTGGGGCCATCAGCCACCCTGCTCCCCCTGCACAAGTTCCGCACCAACTTCTCTCAGCCCGTGTGCCTGGGCTTCGGCCTCTATAAACCAGAGCTCAACAGCCAGGTCTCCATCATCAGGAAAACATGACTGATCGATGCTGACGGACCCTTTAGTTCACAGTCAGAAGAATGAACCCAGTTTACTGGATAATACGGCAGcattaaagggcccatatcctaacattttcatatatttattccTTAAAGGTAAATTGGTGGTttgttactgtgtttttaagacttggtttggaaacaccttctcattcaatgtttttatttttattcctacagcggtcctgatgagagccagtttcatcattacctTTTTGCTGCTCTTTGTGATTTATTAGATTAACaaaattcactgtatacctgtaactctgcctcttcacaactttacaactgatgctctcaaacatattaagaggcaag

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258037.3 True 2753 mRNA 0.47 7 6828752 6840206

Neighbor

gene id symbol gene type direction distance location
LOC103040079 cbln12,LOC103040079,LOC108438942,LOC107668986,LOC107591379,LOC108267329,LOC107704284,LOC107738140,LOC107557939 coding downstream 2087 6819828 ~ 6826665 (-)
LOC103024388 chd8,LOC107738141 coding downstream 14866 6769321 ~ 6813886 (-)
LOC103038610 NA coding downstream 111665 6704369 ~ 6717087 (-)
lamc2 NA coding downstream 279285 6511097 ~ 6549467 (-)
smg7 smg7,LOC107658366,LOC107563557,LOC107557277,LOC107722067 coding downstream 355032 6439649 ~ 6473720 (-)
rnf212b rnf212b coding upstream 178858 7019064 ~ 7028638 (-)
LOC103043766 NA coding upstream 189490 7029696 ~ 7032955 (-)
LOC103044081 NA coding upstream 194558 7034764 ~ 7040449 (-)
LOC103044685 LOC108438930,LOC107738128,LOC107591391,LOC105021476,LOC106569429 coding upstream 206174 7046380 ~ 7082374 (-)
LOC103044995 slc7a8a,LOC102238406,LOC107668787,LOC107753926,LOC103388347,LOC103475980,LOC108245892,LOC107377273 coding upstream 248425 7088631 ~ 7122759 (-)
G139635 NA non-coding downstream 61233 6765964 ~ 6767519 (-)
G139633 NA non-coding downstream 69286 6759192 ~ 6759466 (-)
G139632 NA non-coding downstream 70922 6757476 ~ 6757830 (-)
G139631 NA non-coding downstream 74315 6753982 ~ 6754437 (-)
G139618 dhx9 non-coding downstream 89810 6736093 ~ 6738942 (-)
G139658 NA non-coding upstream 13780 6853986 ~ 6856889 (-)
G139649 NA non-coding upstream 105552 6945758 ~ 6948035 (-)
G139647 dhrs1,LOC107591385,LOC107738130 non-coding upstream 118336 6958542 ~ 6969153 (-)
G139691 LOC103358415,LOC107668969,LOC108438931,LOC107562413,LOC107588156,LOC106608856,LOC106577802 non-coding upstream 201384 7041590 ~ 7046262 (-)
G139694 NA non-coding upstream 216614 7056820 ~ 7059299 (-)
lamc1 lamc1,LOC107658363,LOC107563558,LOC107678923,LOC107557259,LOC107722047,LOC106599430 other downstream 139029 6564903 ~ 6689723 (-)
G139587 NA other downstream 398433 6417385 ~ 6430319 (-)
G139487 NA other downstream 454043 6304969 ~ 6374709 (-)
LOC111194281 NA other downstream 774019 6022609 ~ 6054733 (-)
G139489 NA other downstream 817885 6009053 ~ 6010867 (-)
LOC103041520 acin1,LOC106608850,LOC107591382 other upstream 1774 6841980 ~ 6944134 (-)
G139706 LOC108438927,LOC107558100,LOC106569426 other upstream 328759 7168965 ~ 7182783 (-)
LOC103024234 slc25a36a,slc25a36,LOC108440632,LOC107668959,LOC107706334,LOC107694658,LOC107561809,LOC107561808 other upstream 1830818 8671024 ~ 8711099 (-)
LOC103044908 LOC103045223,LOC108413497,LOC105899383 other upstream 2856949 9697155 ~ 9714037 (-)
G140342 NA other upstream 3195197 10035403 ~ 10103457 (-)

Expression


Co-expression Network