LOC103041213 (LOC103041213,LOC108438939,LOC107591383,LOC107704286,LOC107668983,LOC107557973,LOC107738136,LOC107706348)


Basic Information

Item Value
gene id LOC103041213
gene name LOC103041213,LOC108438939,LOC107591383,LOC107704286,LOC107668983,LOC107557973,LOC107738136,LOC107706348
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6864807 ~ 6891899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007258040.3
CTGCTTGTGGAACAGGAGATCTTGGAGCTAGTAACTTTTTCAGAGACCACGTCAACAGCTCAGAGCAGGGGGGCtccagagaagaagaagagcatgagctcagagagagagaactgataTAAACAAAGGACTGAAGAGGAGAGGacaaaggaaagagagagagagagagagaagcatgagCAACCACTTCACTttactgcactctctctctactgacTGAGTAAAGGGTATGAGTGGTATATGTGGCCTGCTGCACAAGCTCATGCAGGACAGTGATAATTTACAGCAGATTAGGTAGCTATAGCTGGgtgtaaacacatttatttaagtttttatcAGGATTTCTGAGGGAAATTTGGGATGAAAAGTTATCCCAAGGCGTAGAcagtcttattttattttatttcacattgtAGAGGTATtttacagaaaagaaaaaggctGAAAAGACTTTGAAAAAAGAGTTTCTGGTCTCCCAACTGGGACTTTGGCTTCAAATAATAATGGCCTTCTTGTGGGATGCTGTTCCTGAGCTTTTGCTCTTACTGGCATGTTGGATGTGTGTTCATGGAGAGGGACAGAAACAAGAAATGAAACCTGAGGCCTGGCTACAGCAGTACGGTTACCTGCCTCCAGGTGATCTCCGGATGCAAGCAGCCCGTTCTCCTCAGTCCATTTCTTCTGCAATCTCCGCCATGCAGAGGTTTTATGGCCTGACCATCACTGGAAACCTTGACTCCAACACCCTGGAAGCAATGAAGAGGCCCCGCTGTGGCGTTCCGGATAAGTTTGGTGCAGAGCTGAAGAGCAACCTGAGAAAGAAACGATACGCTATCCAGGGACTGAAGTGGGAGAAGAAGGAGATCACGTTCTGCATACAGAACTACACCCCGAAGGTCGGCGAGTACGAAACCTTCGACGCCATTCGAAGAGCGTTTAAAGTGTGGGAGGGGGTCACGCCCCTGAGATTCAGAGAGATCCCGTACAGTCACATAAAGGACAAGACCTCTGACTTTGCGGACATCATGCTGTTCTTCGCTGAAGGGTTCCACGGGGATTCCAGTCCATTTGATGGTGAGGGAGGCTTCCTGGCACACGCCTACTTTCCTGGCAACGGCATCGGAGGAGACACACATTTTGACGCCGCTGAGCCATGGACGATTGGCAACCGAGATCTGATGGGTAATGATGTCTTCCTGGTATCGGTGCATGAGCTGGGCCACGCCCTGGGCATGGAGCACTCGAATGACCCCTCTGCTATAATGGCCCCATTCTATCAGTGGATGGACACAGATAACTTTGAGCTTCCTGAAGATGACCTTCGTGGGATCCAGCAGCTCTATGGACCTAATCCTGGTGACCATCCTCGACCACCGTTCAGCCCCCGAACACCTTACAATACTCCCCGCCCCACACAAAATCCACGCAAGCCAGGAGTGTCAGGCTTTGCCCCCGATATCTGTGAAGGCCACTTCGACACCATCGCCATTTTCAGAGGGGAAATGTTCATTTTCAAGGATAAGTGGTTCTGGCGGGTCCGTAATCAGAGGGTTATGGAAAATTACCCCATGCCGATTGGACATTTCTTCAGAGGTCTTCCCACAACCATTAACGCTGCCTATGAGAGAGAGGATGGAAAATTTGTCTTTTTCAAAGggGACAGGCACTGGGTGTTCAGTGAATCAATCTTGGATGCAGGCTACCCCAAGACACTGAGGGAGATGGGTAGTGGTCTCCCTAAGGACAGAATAGACTCCGCCCTTCTGTTCACGCCCTCAGGAAACACCTACTTCTTCAGAGGAAACAAATACTATCGCTATAATGAAGACACACGATCAGTGGACCCAGACTATCCTAAACCAATCAGCAAGTGGCAGGGGGTCCCAGATAACATCAAAGCGTCATTCATCAGCCGAGACCAAAGTTACACCTACTTCTACAAAGCCAATAAGTACTGGAAATTCAACAACCAGCTGCTGCGTGTGGAGCCTGGCTACCCCAAGTCTGCCCTCAGGGACTGGGTCGGCTGCCCAGATGAAGACCCCAAGACCGGCGGTGGTGGAGGTGGCCGTACCAACGACCGTACCAATGACCGCAACGACAGGAATGACGGCAACGACGGCAATGACGGCGGTAATGCTGATGATGGCAGCGACTACGAGGAAACAAAGCATGAAGAAGAGGAAACGGTGGACGAGACGGAGGTGATCATCATCAAGGTGGACAACGGTGCCGGCGGCGGCAGCGGGGCGGCGGCGGTGGTGGTGCCGCTCAtgctgctggtgtgtgtgaTCTGCACGCTGGGGGCCTTGCTGTTCTTCCGCAGGTACGGCACTCCCCGTCGCCTGCTCTACTGCCAGCGCTCCTTACTGGACAAGGTttagagaggaagaggaggaggaggaggaggagaggagggatagagtgaagaggaggaggggaCCACAGAGgacaggagaggagaggaggatgaaggATTGGAGGAAGTTAAGTACAGCAATATTCAGGCATTTACGGAAAACAAAGATGAGAGCCTGGCTGTTTGGGGCAGATTTTCACCCCAATCTTTAATATCAACCAAAGACTGTAGAGAATTGAAGCATTTTGGATATAGTTTACAGAAAAATTGTGGGTTGATTGTGGTTTTAAGTTCAAATTGTAGAATGCATTTGTATGGCTTAAagaattgttatttttattttctcccaaattcattttttccctgttttttcatttttttctgattatttttgctcaattttagattttttgttgctttttttatcTATGCCTGTTGTTTTGTTCATATCACAGAAATCATAGGGCCCTATATTAGAACATGTCTTAATACTTACTGTGCAGCTATACTGCATTATGTAATAATATGAGTGGTGTTAAAaggttctaaaataaaaaaaatgatgtttaacAGATCTGTATTTGACTAGCATACGGTTGTCCAACCTGTGGTGAAGTAGTAACTTGTGTTTAATTGAATCCATTATTTACTATACCAGCGAAACCCCACAAAGTATGACTGATCCACGCCCATGCTTTACAGTTGGAGATGTGTTCTTGTAATTGAATTCTGCCCAATTCTGCCTCATTGCAGatgattaaatgtgttaaaaagacACAGACTTACAGGTATATTTGCAGAGTAACTAAAATTTATAATTACAAAAATTTAGACCAGGGGTGCCCAGGTTTGCTAGACTAGATTTTGCACAGCTACCGACCATTTATGGTTTATTTGCCCAATTATTAGAATATTGgatgtaattctaaaaaatgtaaattaatatagTTTATTATGTATTGCTTTATTTCCTTGTATTTCtccttttaaataatttagtcACTAAACAGTACTTGTGCTTTtaataaatctaaatctaaataaaataaaaaatccctAAATCCAGGTATAATTTTGCTCCTGTAAATGAGTTACAATGTAGGTCAGCACAGATACGATTCtgattctttatttctttttgaagCCACTCCATtgaatgtactttttttttttttttatcgctaACAAGATCACATTGGTTAGAGGTTCTGAATGTTGTTCATTTAGGTTGTTCTGTACCTGCATCTGTTTTAGACCACTGAACTGTAATGCATGATGtgtatcatttatatttttattatgttataatTGATCTACAGACATCTGAAGTTGATATCAATATTGttagtagtagcagtattaTAAGTCTTTATGACACATTAGAATAGTAacgaaaaaaaagtgtgaagcGAAATACTGCATCCCATCATTTTTATCATTCACATTTAAACTCATGCTCTTGAAAAGTGATGAGATTAGGCATTCCTTTACTCATCTCTCCACAGTCTCTTCTGTCTCCTCTCCTTTTGATCCACTCTCCTTTTGTACCCCCTCTGGTGTAGCCCGTGACGCCAGCTCATCGCTGTTTGTTTGACCCCTTTTTTTTACGTCCTTACATAGCTGTGGTTTCATTCATCTCATCGTTATGACTTGCCATACGTCGGTCAGAGATTCAATTCAGATACTTTAATACTGTTTAATTAAGTGATTTTCAAAAAAATCCATTCAGCAGCCCTAATTAGACCACTCAGCAAAAGTAAGaacccccccacccctccccaggTATGTAGCACCCTAACCAAAATCCCAGTCCTTCCCAGTCCTTTACATCAGCCCCCTTTTCCCCTTTATACTAAGGCCTTTAGAAGCCTGCATTAAAagttgtgtgtttgtctgtctttcACTAATATGCCTTACTATTGTACTGTATCGTagattgttattattaataatgatgatgtcattattattattatgactattgctattattgttattgttgttctCCTTGaaaagaatgtgtttttttagcatTGTCATAAAAGTGTCCTGCTGGACAGGCAACAGATCTAAATGTTATGAAGTGGCCTTGATTTGGGGGAAAGGGTGGGTTTGTACTTCTGAatttaagacattaataaaTTGAGGATGTGAAAAATGAGTTCTCTTTGTGTTTACACTTTTAATTCTTGACTTGtggtgctttgtttttttttattttattaaatgggaTTAAGTTTAATGAAACAAAACAATGATAATGATatttaatgataatgataatgattatTATCTAAAATGAACTAATTCCTAATTGTATTTGTCCATTTTCATTGTGCTGTTTTTTATGTCtcttaaataagaaataaattttTATACGTTTTATTA

Function

NR:

description
LOW QUALITY PROTEIN: matrix metalloproteinase-14-like

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0051216 cartilage development biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0006508 proteolysis biological_process
GO:0030010 establishment of cell polarity biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K07763 MMP14; matrix metalloproteinase-14 (membrane-inserted)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007258040.3 True 4747 mRNA 0.42 11 6864807 6891899

Neighbor

gene id symbol gene type direction distance location
LOC103040698 NA coding upstream 12544 6842902 ~ 6852263 (+)
LOC103039234 NA coding upstream 100936 6757423 ~ 6763871 (+)
LOC103024078 LOC108438945 coding upstream 110394 6744942 ~ 6754413 (+)
nmnat2 nmnat2,LOC106569066 coding upstream 359847 6477432 ~ 6504960 (+)
LOC103029132 NA coding upstream 610844 6249525 ~ 6253963 (+)
c16h14orf119 NA coding downstream 53779 6945678 ~ 6950144 (+)
LOC103043149 dhrs1 coding downstream 66637 6958536 ~ 6969199 (+)
LOC111194294 NA coding downstream 84072 6975971 ~ 6989371 (+)
LOC103024705 NA coding downstream 103654 6995553 ~ 7004249 (+)
LOC103043453 NA coding downstream 113565 7005464 ~ 7018530 (+)
G139362 cbln12,LOC103040079,LOC108438942,LOC107738140,LOC107591379,LOC107668986,LOC107557939,LOC107704284 non-coding upstream 42121 6821915 ~ 6822686 (+)
G139347 NA non-coding upstream 96563 6768023 ~ 6768244 (+)
G139328 NA non-coding upstream 257150 6559387 ~ 6607657 (+)
G139326 NA non-coding upstream 315367 6538049 ~ 6549440 (+)
G139298 NA non-coding upstream 421641 6437618 ~ 6443166 (+)
G139375 NA non-coding downstream 39619 6931518 ~ 6933473 (+)
LOC111194296 NA non-coding downstream 137383 7029282 ~ 7039380 (+)
G139395 NA non-coding downstream 154519 7046418 ~ 7049729 (+)
G139401 NA non-coding downstream 195078 7086977 ~ 7087682 (+)
G139710 NA non-coding downstream 300009 7191908 ~ 7192404 (+)
dhx9 dhx9 other upstream 122738 6718238 ~ 6742069 (+)
G139282 NA other upstream 597420 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 622236 6235434 ~ 6242571 (+)
G139268 NA other upstream 700643 6159720 ~ 6164164 (+)
LOC103021569 NA other upstream 708878 6145963 ~ 6155929 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other downstream 149661 7041560 ~ 7046298 (+)
LOC103030954 NA other downstream 2269434 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 2328375 9220274 ~ 9223981 (+)
G140062 NA other downstream 2647876 9539775 ~ 9540810 (+)
G140103 NA other downstream 2851799 9743698 ~ 9745355 (+)

Expression


Co-expression Network