rgs20 (rgs20,LOC108440656)


Basic Information

Item Value
gene id rgs20
gene name rgs20,LOC108440656
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13796394 ~ 13846951 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260179.2
TCCACTATGGATACACACTGCAGTGCTCACTGGAGTTGTAGCCGTATCGCTTCTCCCTCCTCATTAAGGACCAACAGTGATGTTGGCGCTGccacagatggatggatggcttcGGTTCCCTAAGCCTGCGCCGTCTCACTGACAACCctgcctgctgctgctgaagtgAGAATGCTCTCCAACAGGATTGTGATAAAGTGGGAAGTATCTTCTGCGGTGCAGTGTATTGaccacacacacttctttaTGTGTGGGCAGCTGCAGCGGCTGCTCTTCGCCTGCCGGCACGGGGAGGGTTATTTGGCTCCAGTTCCAAGTTATGAAAGTGACATTGAGCACGGACATGGACCGGTGGAACCTATATCCTTCCAGCCCATGGGATCGGAGAGGATGGAGATGCGAAAGAGGCAGCTGTCAGGGCAGCAGGAGGCGGTGGCGGGGGTGACAGTGACGGCGCCGGCACAGCAGGGCCAGGCCGGCCAGGGCCAGCGTGCCTCCAACGcctgctgcttctgctggtgctgctgctgcagctgctcctGTCTCACTGTTAGGAATGAagacagagaggagaggaacCGGAAAGCCTCGTACGACGTCAAAGCAGAGGGCACCACCGACTGTGAGGAGAGCCCGAATCCCACTGTGGAAGAGGTGCGCGCGTGGGGGCAGTCCTTCGATAAGCTGATGCACTGCCCATCCGGACGCAGTGCCTTCCGCCAGTTCCTGCGGACAGAGTTCAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGCGAGGAGTTCACCAAGGAGACCAACAAGAGCGCCATCGAGGAGAAAGCTCGCCTCATATACGAGGACTACATCTCCATCCTCTCACCCAAAGAGGTGAGTCTGGACTCGCGTGTGCGGGAGGTCATCAACAGGAACATGCTGGAGCCCACGTCTCACACTTTCGATGACGCCCAGCTGCAGATTTACACCCTAATGCAAAGAGACTCATATCCGCGGTTTATGAACTCGGCGGTCTACAAAAACCTGCTGAAGAGCGTCTCTGAGCAGTCTCCAGAATCCTAGATCTCTGTGACCCCACTCCAGTAACCCCAccctctccttcttcttcttcttcttctgcttctgcttcttctttttgttgttcttttttctcatttttttctttgagtAGAGTATGTTTAAAAGGACCTCAGCGTGGGTCCCTTGCAGGGATTTTACTGCATTAGAGATCTGTACCTGAAAAAAGACACTCAGGTCCTCCAGGTCACTggattttaaaaacaatgtctCAAATCTCCTGAGGGCTCAACACCACAAGTACTGCTACAGATCAACATAGCAAGATGCTCCAAAGGAAtaccagtgtgtttttttttcttcttttttttctttcttttgtgtttttaaagaggaataatctattttatttgttttctgagtttcttttttaattattgtttttaaaatacaattttttgtattctgtttgaAAGAAGACGTGACACCCGTTGTGggctatttacagtatatacagtagatatatTTATTGAATTTGTAATATATTTCCTCAACAATCTTTCTTGtcttacaatatttaaagaaaagggAATTATGGGTAACAGGACGTGCCCAGTTCTGAACACTGCGTATGAGAATCAAAGCTCAAAGTCAAGGCAACACATCAGCTTTACGCACAGGAAACTGTGTGAGGTACTGTAACAATCCAGCTCCGCATATTTCATTACCTGTTCCCTCCCATAATCACTTGGCACCTCCAATCGGAGAAGACATTTCGCCATATTTAAGATGTTTTTGTTATTCAGATCAGTGttaaaagagtgaaaaaaggCAGAAACTAAATAGAAAGTTATTTGAAAGAAAATCAAATCTCAGATTTATAAATGCTATCAGCTAATCAGCAAACCCACTCTtcatcatatttattatttaaaccctgATTTCATTCAGTTACATATTTCCCA
>XM_007260180.2
TCCACTATGGATACACACTGCAGTGCTCACTGGAGTTGTAGCCGTATCGCTTCTCCCTCCTCATTAAGGACCAACAGTGATGTTGGCGCTGccacagatggatggatggcttcGGTTCCCTAAGCCTGCGCCGTCTCACTGACAACCctgcctgctgctgctgaagtgAGAATGCTCTCCAACAGGATTGTGATAAAGTGGGAAGTATCTTCTGCGGTGCAGTGTATTGaccacacacacttctttaTGTGTGGGCAGCTGCAGCGGCTGCTCTTCGCCTGCCGGCACGGGGAGGGTTATTTGGCTCCAGTTCCAAGTTATGAAAGTGACATTGAGCACGGACATGGACCGGTGGAACCTATATCCTTCCAGCCCATGGGATCGGAGAGGATGGAGATGCGAAAGAGGCAGCTGTCAGGGCAGCAGGAGGCGGTGGCGGGGGTGACAGTGACGGCGCCGGCACAGCAGGGCCAGGCCGGCCAGGGCCAGCGTGCCTCCAACGcctgctgcttctgctggtgctgctgctgcagctgctcctGGAATGAagacagagaggagaggaacCGGAAAGCCTCGTACGACGTCAAAGCAGAGGGCACCACCGACTGTGAGGAGAGCCCGAATCCCACTGTGGAAGAGGTGCGCGCGTGGGGGCAGTCCTTCGATAAGCTGATGCACTGCCCATCCGGACGCAGTGCCTTCCGCCAGTTCCTGCGGACAGAGTTCAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGCGAGGAGTTCACCAAGGAGACCAACAAGAGCGCCATCGAGGAGAAAGCTCGCCTCATATACGAGGACTACATCTCCATCCTCTCACCCAAAGAGGTGAGTCTGGACTCGCGTGTGCGGGAGGTCATCAACAGGAACATGCTGGAGCCCACGTCTCACACTTTCGATGACGCCCAGCTGCAGATTTACACCCTAATGCAAAGAGACTCATATCCGCGGTTTATGAACTCGGCGGTCTACAAAAACCTGCTGAAGAGCGTCTCTGAGCAGTCTCCAGAATCCTAGATCTCTGTGACCCCACTCCAGTAACCCCAccctctccttcttcttcttcttcttctgcttctgcttcttctttttgttgttcttttttctcatttttttctttgagtAGAGTATGTTTAAAAGGACCTCAGCGTGGGTCCCTTGCAGGGATTTTACTGCATTAGAGATCTGTACCTGAAAAAAGACACTCAGGTCCTCCAGGTCACTggattttaaaaacaatgtctCAAATCTCCTGAGGGCTCAACACCACAAGTACTGCTACAGATCAACATAGCAAGATGCTCCAAAGGAAtaccagtgtgtttttttttcttcttttttttctttcttttgtgtttttaaagaggaataatctattttatttgttttctgagtttcttttttaattattgtttttaaaatacaattttttgtattctgtttgaAAGAAGACGTGACACCCGTTGTGggctatttacagtatatacagtagatatatTTATTGAATTTGTAATATATTTCCTCAACAATCTTTCTTGtcttacaatatttaaagaaaagggAATTATGGGTAACAGGACGTGCCCAGTTCTGAACACTGCGTATGAGAATCAAAGCTCAAAGTCAAGGCAACACATCAGCTTTACGCACAGGAAACTGTGTGAGGTACTGTAACAATCCAGCTCCGCATATTTCATTACCTGTTCCCTCCCATAATCACTTGGCACCTCCAATCGGAGAAGACATTTCGCCATATTTAAGATGTTTTTGTTATTCAGATCAGTGttaaaagagtgaaaaaaggCAGAAACTAAATAGAAAGTTATTTGAAAGAAAATCAAATCTCAGATTTATAAATGCTATCAGCTAATCAGCAAACCCACTCTtcatcatatttattatttaaaccctgATTTCATTCAGTTACATATTTCCCA
>XM_007260181.3
cgTGTGAGCGAACaaggcagggagagagagagaggggtagagagtcGGAGatgcgcatgcgcagtgccgcaAAACAGCCGGACTCTCAAAAAGGGAAAACGGAGAAAAATCCTTATGCCCACGGATGTAATCAAGGCGAAGAATTACCTCTTATCTCTGGGCATACATGGTGAAAGTCCCATGGGATCGGAGAGGATGGAGATGCGAAAGAGGCAGCTGTCAGGGCAGCAGGAGGCGGTGGCGGGGGTGACAGTGACGGCGCCGGCACAGCAGGGCCAGGCCGGCCAGGGCCAGCGTGCCTCCAACGcctgctgcttctgctggtgctgctgctgcagctgctcctGTCTCACTGTTAGGAATGAagacagagaggagaggaacCGGAAAGCCTCGTACGACGTCAAAGCAGAGGGCACCACCGACTGTGAGGAGAGCCCGAATCCCACTGTGGAAGAGGTGCGCGCGTGGGGGCAGTCCTTCGATAAGCTGATGCACTGCCCATCCGGACGCAGTGCCTTCCGCCAGTTCCTGCGGACAGAGTTCAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGCGAGGAGTTCACCAAGGAGACCAACAAGAGCGCCATCGAGGAGAAAGCTCGCCTCATATACGAGGACTACATCTCCATCCTCTCACCCAAAGAGGTGAGTCTGGACTCGCGTGTGCGGGAGGTCATCAACAGGAACATGCTGGAGCCCACGTCTCACACTTTCGATGACGCCCAGCTGCAGATTTACACCCTAATGCAAAGAGACTCATATCCGCGGTTTATGAACTCGGCGGTCTACAAAAACCTGCTGAAGAGCGTCTCTGAGCAGTCTCCAGAATCCTAGATCTCTGTGACCCCACTCCAGTAACCCCAccctctccttcttcttcttcttcttctgcttctgcttcttctttttgttgttcttttttctcatttttttctttgagtAGAGTATGTTTAAAAGGACCTCAGCGTGGGTCCCTTGCAGGGATTTTACTGCATTAGAGATCTGTACCTGAAAAAAGACACTCAGGTCCTCCAGGTCACTggattttaaaaacaatgtctCAAATCTCCTGAGGGCTCAACACCACAAGTACTGCTACAGATCAACATAGCAAGATGCTCCAAAGGAAtaccagtgtgtttttttttcttcttttttttctttcttttgtgtttttaaagaggaataatctattttatttgttttctgagtttcttttttaattattgtttttaaaatacaattttttgtattctgtttgaAAGAAGACGTGACACCCGTTGTGggctatttacagtatatacagtagatatatTTATTGAATTTGTAATATATTTCCTCAACAATCTTTCTTGtcttacaatatttaaagaaaagggAATTATGGGTAACAGGACGTGCCCAGTTCTGAACACTGCGTATGAGAATCAAAGCTCAAAGTCAAGGCAACACATCAGCTTTACGCACAGGAAACTGTGTGAGGTACTGTAACAATCCAGCTCCGCATATTTCATTACCTGTTCCCTCCCATAATCACTTGGCACCTCCAATCGGAGAAGACATTTCGCCATATTTAAGATGTTTTTGTTATTCAGATCAGTGttaaaagagtgaaaaaaggCAGAAACTAAATAGAAAGTTATTTGAAAGAAAATCAAATCTCAGATTTATAAATGCTATCAGCTAATCAGCAAACCCACTCTtcatcatatttattatttaaaccctgATTTCATTCAGTTACATATTTCCCA
>XM_022678040.1
tctcAACTCTCATTTATTCAATATGATTATGATTCTTTAGGAATGATTCAGTGTATTCTGAAACCACATTCCTCATTGATTCAATATGATTCTGATTATTTAGAAATGATTCAAGGTATTCTGAAATATTACCTGTGATTAACTTAGTGTGATTATGATTATTTCCAGAAATGATTTAGTGTATTCTGAAATCTTAACACTTATTgatttaatatgaatatgattCCTTTAGAAAATATTCAAGGTATTCTGATATTATTAGCCCTCATTAACttaatgattatgattattttagaaatgattcagtgaatTCTGAAATCACAACTGTCaatgatttaaaatgaatatgattatttttttaaatattcagtgtattttaaaaTCTTAACTCATTGATTTAGTATGATTATGATTCTGATTTCACCATAAATCAATttagtttaattaacattttcaaTCTCaaaatgtgtatattatttaatttagttctgATTGTCTAGATAATGAATCTGTGTAGTATTAAATCCCAAATCGATTCAGTTCTTGTGTTACAATTTCTAATAACTAGAATCTTTGAATTTGGCTAAATAAAGTTGGTTTGATTGACTAAGCAGTATTATAATACACCAGATTCCTTTGTTCAGTCAGTGACTGTAGCTCactgttgttatattatattagacagTAATGATATGCGGTAATTAATGCAGTATTAAAGGGTGTGAAGTAAAGGTTTGGAAACAGACACGAATAGCTGCCTCCTCCTGGTGCGGTGTGTTTGGTGTCTGGGGTGATGATGTGCTTACTACCTTGCAGTCTCACTGTTAGGAATGAagacagagaggagaggaacCGGAAAGCCTCGTACGACGTCAAAGCAGAGGGCACCACCGACTGTGAGGAGAGCCCGAATCCCACTGTGGAAGAGGTGCGCGCGTGGGGGCAGTCCTTCGATAAGCTGATGCACTGCCCATCCGGACGCAGTGCCTTCCGCCAGTTCCTGCGGACAGAGTTCAGCGAGGAGAACATGCTCTTCTGGCTGGCCTGCGAGGAGTTCACCAAGGAGACCAACAAGAGCGCCATCGAGGAGAAAGCTCGCCTCATATACGAGGACTACATCTCCATCCTCTCACCCAAAGAGGTGAGTCTGGACTCGCGTGTGCGGGAGGTCATCAACAGGAACATGCTGGAGCCCACGTCTCACACTTTCGATGACGCCCAGCTGCAGATTTACACCCTAATGCAAAGAGACTCATATCCGCGGTTTATGAACTCGGCGGTCTACAAAAACCTGCTGAAGAGCGTCTCTGAGCAGTCTCCAGAATCCTAGATCTCTGTGACCCCACTCCAGTAACCCCAccctctccttcttcttcttcttcttctgcttctgcttcttctttttgttgttcttttttctcatttttttctttgagtAGAGTATGTTTAAAAGGACCTCAGCGTGGGTCCCTTGCAGGGATTTTACTGCATTAGAGATCTGTACCTGAAAAAAGACACTCAGGTCCTCCAGGTCACTggattttaaaaacaatgtctCAAATCTCCTGAGGGCTCAACACCACAAGTACTGCTACAGATCAACATAGCAAGATGCTCCAAAGGAAtaccagtgtgtttttttttcttcttttttttctttcttttgtgtttttaaagaggaataatctattttatttgttttctgagtttcttttttaattattgtttttaaaatacaattttttgtattctgtttgaAAGAAGACGTGACACCCGTTGTGggctatttacagtatatacagtagatatatTTATTGAATTTGTAATATATTTCCTCAACAATCTTTCTTGtcttacaatatttaaagaaaagggAATTATGGGTAACAGGACGTGCCCAGTTCTGAACACTGCGTATGAGAATCAAAGCTCAAAGTCAAGGCAACACATCAGCTTTACGCACAGGAAACTGTGTGAGGTACTGTAACAATCCAGCTCCGCATATTTCATTACCTGTTCCCTCCCATAATCACTTGGCACCTCCAATCGGAGAAGACATTTCGCCATATTTAAGATGTTTTTGTTATTCAGATCAGTGttaaaagagtgaaaaaaggCAGAAACTAAATAGAAAGTTATTTGAAAGAAAATCAAATCTCAGATTTATAAATGCTATCAGCTAATCAGCAAACCCACTCTtcatcatatttattatttaaaccctgATTTCATTCAGTTACATATTTCCCA

Function

symbol description
rgs20 Orthologous to human RGS20 (regulator of G protein signaling 20).

NR:

description
PREDICTED: regulator of G-protein signaling 20 isoform X2

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260179.2 False 1976 mRNA 0.47 5 13796394 13846951
XM_007260180.2 False 1964 mRNA 0.47 5 13796394 13846951
XM_007260181.3 False 1781 mRNA 0.46 5 13821624 13846951
XM_022678040.1 True 2250 mRNA 0.38 4 13840739 13846951

Neighbor

gene id symbol gene type direction distance location
LOC103030306 NA coding upstream 359191 13393377 ~ 13437203 (+)
LOC103030385 LOC108437225 coding upstream 1064026 12708110 ~ 12732368 (+)
LOC103027534 NA coding upstream 1331747 12179687 ~ 12464647 (+)
LOC103028579 NA coding upstream 1623928 12132187 ~ 12172466 (+)
LOC103028056 NA coding upstream 1868646 11866450 ~ 11927748 (+)
LOC103040707 NA coding downstream 19336 13866287 ~ 13882845 (+)
gpr141 NA coding downstream 53957 13900908 ~ 13918612 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding downstream 91334 13938285 ~ 14142611 (+)
LOC111194316 NA coding downstream 369159 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 409921 14256872 ~ 14269906 (+)
G141323 atp6v1h non-coding upstream 5036 13758683 ~ 13791358 (+)
G141311 NA non-coding upstream 148322 13647861 ~ 13648072 (+)
G141292 NA non-coding upstream 207935 13588090 ~ 13588459 (+)
G141291 NA non-coding upstream 208569 13587352 ~ 13587825 (+)
G141285 NA non-coding upstream 209961 13585828 ~ 13586433 (+)
G141405 NA non-coding downstream 321763 14168714 ~ 14170792 (+)
G141406 march6,LOC107664076 non-coding downstream 325275 14172226 ~ 14173432 (+)
LOC111194315 NA non-coding downstream 335093 14182044 ~ 14198647 (+)
G141413 NA non-coding downstream 338256 14185207 ~ 14191053 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding downstream 356038 14202989 ~ 14208816 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 936067 12842798 ~ 12860327 (+)
G141086 NA other upstream 1052941 12741473 ~ 12743453 (+)
G140930 NA other upstream 1414840 12378996 ~ 12381554 (+)
G140931 NA other upstream 1555769 12237988 ~ 12240625 (+)
LOC111194237 NA other upstream 2317654 11455485 ~ 11478740 (+)
G141361 tcea1 other downstream 8652 13855603 ~ 13858605 (+)
G141410 NA other downstream 333714 14180665 ~ 14200998 (+)
G141495 NA other downstream 681189 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 932230 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 1207706 15054657 ~ 15056973 (+)

Expression


Co-expression Network