LOC103035806 (ctnnd2,ctnnd2b,LOC107746909)


Basic Information

Item Value
gene id LOC103035806
gene name ctnnd2,ctnnd2b,LOC107746909
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 13938285 ~ 14142611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260188.3
acgGAGAGagagggctgctgctgctgctgctgctgtctctcCGTGGCCGTTTTTCCGCCTCCTTTTCTTCCCCAGCTGTGGATGTTTTTAGCGGATGCTCTCGGCGTCTCTCGGGCGGTCGGTGAGGGATGGTTGACATTATTAGCTGTGTGTTTCAATTTTCGGCGTTAATCTGAAAACGGAGGAGGAAGGAGATCATATGTACTCGGAGTAATGCCAGTTCCTGATCAACCTTCTGACAGTGAAAACTCCAGTATGTTGAGCCCAGTCCTTAACGCCTCCAACGGGGATGGATCTGAAACAGAGACTACCTCTGCTATCCTGGCCTCCGTCAAGGAGCAGGAGCTGCAGTTTGAAAGACTGACCCGAGAGCTCGAAGCTGAGCGACAGATTGTGGCCACCCAGCTGGAACGATGCAAACTGGGATCTGAGACTGGGAGTGTGAGCAGCATCAGTTCTGCTGACGAGAAGTTTCGCTGGAACAATCAAGACGGACAGAAGGATATAGAAGAAGAGCTCACCACCGGCCTGGAGCTCGTGGACTCCTGCATCAGATCTCTGCAAGAGTCTGGAATTCTGGATTCACAGGAATTTGCAACAGGAGAAAGACCAGGCATCCTGTCTCAGAGtgctctacagctcaataaTCAAGAGGGCAACTTCCCTTATTCTggttaccatagcaaccagacCCTGGCCCTGGGCGACCCGTCAGCCTCCCAGCCCCCTCCACGCAGTGGTCAGGTGGGAGGAGCCGTACACAGCTATAATCAGGTGACGTCTAACCGTGCCGCCCAGCTGGCGGGCGGCGATTGCGCCCAGTCCAGAGACTCGTTTGCCCAGAGTCATGGTAGCGCCTTCCACCTGCCTGACGTCCAGCCTGCCACCTCCATCTACTACTCCTGCGCCACTCTGCCGGCCCAACGTGTGAGCTCCCCCCTCTCCATGCAGGCCCTGGACTCGCCCTCCAAGCTGCAGAGGCTGGCCTCAGCCTCCGACATGCCCAGCTACGCCACCCTGCAGCGCGTGTCCTCGCCCAAGCAGTCGCCCAGCCGCCTGGCCAAGTCCTACAGCACCAGCTCGCCCATGAACATGGCAGCTGGAGGGGGCTCCGCCTCTTCCCCTCTACACGCCATGTCCGGCCAGGGCAACGTCTCCAGCTCCTCCCCCCTCCACCAGCTCAGCTCGGTTGTAGGCAGCTATGCCACTCTGTCGCCCACTAAGCGAATGCTGCACTCCTCCGACCAGTACAAGATTTCCCATGACCTGTATGCCAACGCTACGCTGCAGAGGCCTGGCAGCCTAGCAGGTTCCAGAGGCTCGTACAGCAGCCAGCACAGTCACCTGGGTGGGGAGCTGCGCCCCCTGCAGTCCCCCGAGCACCACATCGACCCCATCTACGAGGACAGAGTTTATCAGAAAGCCCCACTGAGGAACTTCAGCCAGGGCCAAGCCCCGTCCTCCCCCGGTGTTGACCCCATCCCCTTGCAGCGCACGGGCAGCCAGAACGCCACCGGGACCTTTCCCCGCTCCGGCTACGCCACCGGACCCGGCGTCTCCGCGGCCGACTACGGCAACCCGTACCGCACTCTGCAGTTCTGCCCCTCCACGGACTCTCCCTACAGCAAGTCTGGTCCTGCTCTGCCACCCGAGGCCACGCTGGTCAGGTCGCCCTCCGTGGACAGCATCCAGAAGGACCCCAGGGAGTTTGGCTGGAGGGATCCAGAGCTGCCCGAGGTGATCCAAATGCTGCAGCACCAGTTCCCATCCGTGCAGTCGAACGCTGCAGCGTACCTGCAGCACCTGTGCTTCGGAGACAACAAGATCAAATCTGAGATTCGGAGGCAGGGGGGCATCCAGCTGCTGGTGGACCTGCTGGATCACCGGATGACAGACGTCCACCGCAGTGCCTGCGGGGCTCTGAGGAACCTGGTGTATGGCAAAGCCAATGATGACAACAAAATCGCTCTGAAGAACTGTGGAGGCATCCCCGCCCTGGTGCGCCTGCTTCGTAAGACCACCGATGTGGAGATCAGAGAACTGCTCACAGGGGTGTTGTGGAACTTGTCCTCCTGTGATGCTCTGAAGATGCCCATTATCCAGGACGCTCTGGCAGTGCTCACCAACACCATCATTATCCCTCACTCGGGCTGGGACTCCTCCCCTCTCCAGGACGAGCGCAAGCTGCACCTGCACTCCTCACAGGTGCTCCGCAACGCCACCGGATGCCTTAGGAATGTGAGCTCTGCAGGAGAAGAGGCACGTCGTAGGATGCGGGAGTGCGAGGGACTGACAGATGCACTGCTCTACGTTATCCAGACCGCTCTGGGCAGCAGTGAGATCGACAGCAAGACTATAGAGAACTGCGTGTGCATCTTGAGGAACCTGTCCTATAGGCTGGCGGCTGAGACGTCTCAGGGGCAGCAGCTGGGCTCGGAGGAACTGGACGGGGTGCTGTGCACCGACGCCAGCGGGAAGGACGCTGAGAGCTCCGGCTGCTGgggcaagaagaagaagaaaaagaagagccaTGATCAGTGGGATGGAGTGGGGCCTTTTCCAGACTCCGGTGATCCACCCAAGGGCCTGCAGATGCTCTGGCATCCGTCCATCGTGAAGCCATACCTGACACTGCTGTCGGAGTGCTCCAACCCGGACACGCTGGAGGGGGCGGCCGGGGCTCTACAGAATCTGGCAGCCGGAAGCTGGAAGTGGTCGGTGTATATCCGAGCAGCAGTGAGGAAGGAGAAAGGTCTGCCTATTCTTGTGGAGCTTCTGAGGATTGATAACGACCGTGTGGTGTGTGCGGTGGCCACAGCCCTCAGGAACATGGCTTTGGATGTGAGGAACAAGGAACTAATTGGCAAGTACGCCATGAGAGACCTGGTGCACCGGCTGCCGGGAGGGAACAATAacagcagcggcggcagcgtGGCAAAGAGCATGTCCGACGACACCATCACTGCCATCTGCTGCGCTCTGCACGAGGTCATTACCAAGAACATGGAGAACACCAAGGCCCTGCGTGACGCTGGAGGCATCGAGAAGCTCATTGGTATCGCACGCAGCAAAGGAGATAAACACACGCCCAAGGTGGTGAAAGCAGCGTCTCAAGTCCTGAACAGTATGTGGCAGTACCGGGATCTGCGCAGCCTTTATAAGAAGGATGGCTATTCTCAATACCACTTTGTGGGTTCATCCTCTacaatagagagagacaggcaaaGACCTTATTCATCTTCACGcactccctccatctctcctgTGCGAACTTCCCCCAATAATCGCTCAGcGAGCGCCCCTGCCTCCCCTCGAGAGATGATGAGCCTGAAGGAGAGGAAGGCGGACTACGAGTCAACTGGAACCAATTCtggttaccatagcaacaaggGCGAGCACACCTCCCGAAAGGACGCCATGGCAGcgcaaaTCTCCAGTGGAACCTCCACTCTGTTCCGAGGTGCTTACGTGTCTCCCAGTGACGACCTCAAACATAACCAGATCTCTGCTCAAGGAAACCCTCCAGAGGCCTACCCTCCCTTCCAGACTCCCCCAGGAGCCAACTTCGAGGAGAATTACTACGAGGACCAAGTGCACCAGCGCCCCCCGCCCGCCGCCGACGGCACCATGCACCTGGGCCTGAAGTCCACCGGCAACTACGTGGACTTCTACTCAGCCTCCCGGCCCTACAGCGAACTCAACTACGAGACGAGTCACTACCCGGCCTCGCCCGACTCCTGGGTGTAGAGGCGGAGGGCCGGGCTGAGGACGCGCCGACACACGGAGAGAAACCAGCCCCGCATGTGCATGAACACTATCggagacacacactcacactcacacacagacatgccccTTCAGTTCGGATCGGACTGGGGATCCCACTGAGCTAGCTGTTCATCCACAGTGGCTGTCAGAGACAGTGtctgaaaaagaagaagaagaagaagagatagAAAAATGGGATGATGTGGAGAAAGGCTAAGGCGTTGTTTTTATCGGACACACAAGCCCCACGAGTGTGCGGACGGACggtgttctgtctgtctgtgtgctgaGGGAGCGCAGGAACATTCAGAAAGCGTTAGGGAAAGCTGTAAATACAGGTAGGGAAAGGAGGTGAGTACGTGAAGCACAAGAAAACGATACATCATTTAACACAAGCTGAGGAAAATAGCTCTGACTCATTTTTAGAACATTCGTTTGAGTTCGACCTGCTTTTTAACGGAGTGCTCTTTTCACGAGGAGCTTCTCAGagcctttttatcttttttgttcATTCTCTTTATTTTGTACCTCCTCTTTTTAACTTCTTAATTCTAGTGTAAAGTATTTGATGTATATTGCAGATGTAGATACATTGAAGTTACATTGTGTATAttacagggaaaaaaaatactgtgtccTCACTCCTCTGTGGCTCAAAATATCGTTTTTCTGGTAGACCTGGGAAACGGAGGGAGGGATACGCGGTTTAAAACGTTCTCTACTGTAGGTATGTAAGGTATGTGTCGGCAGCAGAAAAGGTAGGCTGTGATTTTAGAAGCTGTAGTTTACTCAGACGTCAggatttcttctttatttctttttatttttaagaacaatTGAGACCATAACAACGAGTGCTGAGTGCTCTACTGCCTGGCAAGAGTTTACCGGTGAACATTTTAACCTCATTCTGCTCAGTTTTTTATGCTTTGTAAAGATTCAGCGAAATgcttttctttgtgtgtgtgttttttttttttctctttttttttctttttctaaatcacactgaactgaaactgTACTGTTCCACTCGGCTCCCAGTGATCTGTGctccatttttgtaaaatgtgcCAAACGTGTTTATCCCTGAGCCAGGGGGGTACCGCCAAGCCTACGCTGAAGTTTACAGCGTAAACATTCAGCGCCTGCGTCATTGGTCGTAACGATACCAGtttgtaaatgctttttttgtttgtttctttgtttgttcgTTCGTTCATTcgtttttttaacatgtttcaAAGGCAAAGAGCCACACACTCTACATCAAGACTGAGGTAACGCTTGGGGGGacgcagccaatcagagctaAGATCCCTCCTACAAATGTACAATTAGTTTACGCTGTGTTGTAAAATAGACGACTGAACAAATCCgtttgttttatttccttttccTCCTCCAGAAAATCGGTGGTTCTTAAGTTCATCGTAGACTAATGTCAATAGAGTacgaatatatattatataaatacaaatatatataaatatatatactttttatgtGCAGATGTGGATGTCACCTAATGCAGCAAcatttatgaagaaaaaaaagacaaagacttGTAGGAATACATGTAGGGTTTTGTTCACGTTAATTTCTGATCTAAATTTTCACTCCAAACTGTTGCCCTCCTCTTGTCATGTCGCCGTTGCTGTGTGAAACGGGTGAGACCAGGGCTCCAGGCACAGAGATGGACGATGTGTCCGAGTTTCTAACACTGATCAGAAAcggtgctaaaaaaaaaaaagacaaacaataaaaaaagcaaaagagagagaacccCACGTCCACATTTTAGTGTCAATATATAATGTTTGCCATTTGATGTCGCTACCTTTCTAAAtatcaaagcagttttaaaAGTGTTTCATACCCAGACTGAAAattagccccgcccccttcaCATTgctaaaaaattaaagaaaaaaaaaaacgacaacaCTGCGAAAGCGCTGCTAGTCTGGACTTGCTTGTAGAAAAGTGACTTTGAGTTGTGATTGCCCTTCTCTCTTATCTCAGGACATCTTACCTTGGCTCTCTGAGGGAGCAGCTCGGCGAACGCTCCTCCTCTCAGACTGAAAGACAGATGCCGCGAGCAGCAGTCGAGGCCTCTGCTCGAGCTGTTACTTAATCTGAAGTGGTTGAGGACCCTTTGAAGTGTGGCGGCAAGCCCTGGTCTTCCCTCCATATcattttgaatttagagataACTCGTCAGACGCGAGGAAACGGAATGATATTTCCTGAATTCGTCTCACATATCTTTCAGCACTGTCAATAGTGaacatgggggaaaaaaaataaacatgcgAAATATTTGTGGAAAAAGTAGACATGTCTGATGACCTGTACTGGAAATGtaagtacatttttttgttgctaGACAAAGTGTTTGAGAGACTTGTGAACCTTTTTATTGCCAGATTGCAACTGATATAAGATAAAAACTGACTATGGGAAAAA

Function

symbol description
ctnnd2b Predicted to enable cadherin binding activity. Acts upstream of or within neuron migration. Predicted to be located in cell junction. Predicted to be active in several cellular components, including adherens junction; nucleus; and postsynaptic density. Human ortholog(s) of this gene implicated in anxiety disorder; major depressive disorder; and schizophrenia. Orthologous to human CTNND2 (catenin delta 2).
ctnnd2 Enables beta-catenin binding activity. Involved in dendritic spine morphogenesis and regulation of canonical Wnt signaling pathway. Located in perikaryon. Implicated in anxiety disorder; major depressive disorder; and schizophrenia.

NR:

description
LOW QUALITY PROTEIN: catenin delta-2

GO: NA

KEGG:

id description
K23491 CTNND2; catenin delta-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260188.3 True 6237 mRNA 0.52 23 13938285 14142611

Neighbor

gene id symbol gene type direction distance location
gpr141 NA coding upstream 19673 13900908 ~ 13918612 (+)
LOC103040707 NA coding upstream 55440 13866287 ~ 13882845 (+)
rgs20 rgs20,LOC108440656 coding upstream 91334 13796394 ~ 13846951 (+)
LOC103030306 NA coding upstream 501082 13393377 ~ 13437203 (+)
LOC103030385 LOC108437225 coding upstream 1205917 12708110 ~ 12732368 (+)
LOC111194316 NA coding downstream 73499 14216110 ~ 14219347 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding downstream 114261 14256872 ~ 14269906 (+)
scrib scrib coding downstream 130218 14272829 ~ 14408400 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding downstream 309729 14452340 ~ 14458287 (+)
LOC103039460 LOC108268156 coding downstream 319379 14461990 ~ 14472520 (+)
G141324 NA non-coding upstream 88303 13793016 ~ 13849982 (+)
G141329 NA non-coding upstream 107255 13826703 ~ 13831030 (+)
G141323 atp6v1h non-coding upstream 146927 13758683 ~ 13791358 (+)
G141311 NA non-coding upstream 290213 13647861 ~ 13648072 (+)
G141292 NA non-coding upstream 349826 13588090 ~ 13588459 (+)
G141405 NA non-coding downstream 26103 14168714 ~ 14170792 (+)
G141406 march6,LOC107664076 non-coding downstream 29615 14172226 ~ 14173432 (+)
LOC111194315 NA non-coding downstream 39433 14182044 ~ 14198647 (+)
G141413 NA non-coding downstream 42596 14185207 ~ 14191053 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding downstream 60378 14202989 ~ 14208816 (+)
G141361 tcea1 other upstream 79680 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1077958 12842798 ~ 12860327 (+)
G141086 NA other upstream 1194832 12741473 ~ 12743453 (+)
G140930 NA other upstream 1556731 12378996 ~ 12381554 (+)
G140931 NA other upstream 1697660 12237988 ~ 12240625 (+)
G141410 NA other downstream 38054 14180665 ~ 14200998 (+)
G141495 NA other downstream 385529 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 636570 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 912046 15054657 ~ 15056973 (+)
G141791 NA other downstream 1086099 15228710 ~ 15285457 (+)

Expression


Co-expression Network