LOC103039460 (LOC108268156)


Basic Information

Item Value
gene id LOC103039460
gene name LOC108268156
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14461990 ~ 14472520 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260197.3
CGATAGTCACGCCCCGCGGAGCAGGAAGCTGTGACCTGTGTATGAGGACGAAGTTTAGAGGTGTTCTGTGTTCTTTCCTCTTGTTGTGTTACTGTGAGAATAAATAAACGCTAGAGAATGCTGGTGAACGCCTCTCAGCGCGGTGTTCTGTCTCTGGGCGCTGTGGAGAGCGTTAGTAAGCGCTGCTGGTGCTGCTCGGTCTGTGGGAGTTTGACCCGCGGGGGACTGAGGCTTTCTCCACGCCGCGCTGCTGCTCTGAGGCGGGACGGCCGCGCAGAGCTCCCCCGGCCTCCGACACCGGTACCGGGGGTGGATAAACACAGCGCTGAGCTTCGGCTGGAGTCGCCCGCTCCCCTCAGACAGTCCCTGCTGTGGCAGAAAGGAAAATCTCACCTCAGTCTGGTAGTTGgaccttttttaaaaaggacTCAGTCTGGTCCTGGGACGGAGAGCGTGTCTATACTGAAAGGCCTGCGGTGgctgctgttcagagAGTTGAGCACCTCCAACAAAGTCATGCAGTATGATCTGGGTTCGAGAAACCTTGAAAAGTCTGGCCACAAAAAGCTCATGTTTGATACACACGCAATGTTTCAGTATTTGGAAGCCAGTGGGTTCACAAGCCAGCAGGCAGAGATTATCATCAAGATTCTGGTCAACACAACCAACACCAACATGGATATCATGTACAGTGATATGGTCACAAAGACTCAGCATGAAATCATGTTGCAGAAGGTAATGTCTCACATTACTGCAGTGAAAAAGGACATGATTATCTTGGAAAAAAGCGAGTTCTCTGCGTTACTGGCAGAAAATGATagaataAAGGTTGAACTTGCACAGCTCAAGATTCAGCTTTTAGATATGATGAACAAAGTACGTGTGGACAACAAGTTGGATATGAACTTAGAAAAAAGTCAAGTAAAGGAGATGAAAGCAGAGCATGAAAAGAAGCTGCTGGAGACAAGGAACGAGATGATCGAGATGcttgcaGAACAAGAACGCCATGTGACTCAGAATAACGTGAAAATCGACACAGAAGTTGCCGGCCTGAAAACCATGCTGGAGTCCCACAAATTAGACAGTATCAAATATCTGGCAgGGTCAGTGTTCACATGTCTCACTGTAGTGCTGGGATTCTTTCGAATATGGATGTAAACTGGTGGCTGTGTCAATACTTAAGGATGATTTCCATAACAAAAGAACAACAAAGCCAGAACTGGAACTGTTGTTAGTTGTATTTGTCTGGCTCGAACATTCCTGATTCTGCCTACATTTATGCACTATTTTTGCTGGTGATaccagtttttttattgttcagttAAATCATGTAATTACAATGCACAGAGTAAACAGTTTAAAGGTGCCTTAAAATGGAATGTATTTCTCTTAGCATAATGCAAATCTTAGAAACATAAACAAATCTGAGCAGTGtgacaagccaattgcaaaccCCCAAAACTGTTACTAGCAGTCCAAGATGGCGGCATGGTAAAACACAGAGGACATGTCTCatcttttgtgtgtttaagaATGAACACCACGGTCTTCGAATGTGGaataaggcgctgccactatgatcaggagatcaccggttcgaatcctgtttatgcagcttgccatcgactaccagagccctgagacagcacagttggccttgctctctctctgggtgggtctCTCCCCCATCACTCTTAGAGTGAAATCGATCAGTACAGggtatctgtgagctgatgtatcggaatcgagttgctgcgctttcctccgagcaggctgtgatgctactcggaaatgctgcatcagcagcagttcaaaaagaagccgtggctgacttcacatgtatctgaggaggcatgtgttagtcttcaccctcctgatgcTGGGACATTACTAGAAATGGGGGgactcctaatgagtgggttggataattggctgtgtaaaatgggataaaaaaaaataaaattaaataaataaaattatataaaaaagaatgaaCACCACAAATGTTTTAGCCAGTTGTGCAATGACCAATGCATCAAGAACAGTGCCTCTATGTACACAATGTGTACTGGCTTGAACACAATATGCATCATAATACTGGGATTACTATTCATTTTATCACAGTATATTACGTAAGAACCTGATTTATTGTAAAAACCGACACAATCATATTtctttttccatattttttgaaaaatttGCTTTTTATCCaaacagaacagtgggatctaatgaGAGAGTACAATAGTGTCATTTAGCGGGGTTTAAACACTACACagaatgaaccactgtctgtcACCAATTcttacataattaataattaaatatctgtgtttttaaaaaacgatACAGTATTACAATATTGATACTTTCTTGCAACCCTTGCTAACTTCACTTTAAACTGAGAGGGTAGCATCACTATCTAGTAGAATTGCTCTGGTAAAATTGAAAGCTGTTAATTTTATGTGAACCATCACTGTGGCTAGCTGGTTACCCGAGCTCATTAAATTATTCACATAAACAGGACTAAAAGCTTGTTTAATTCTTGAAAGGGTTGTAAATGGGCTTAGTCACACATCATCTATTTAGACACCAGATAACAGTTTACAACACTAAATCAATGCATCTTGTGACAACATTTAAgactaatattaaaataaaggacaaaaaatatgcaaaataataGATGAGCTGTGTATGATACCAAAGATTATCATTTTGTGTGTACATATAGATGTATATGCTTAGGTCTACACTTGCCTTTCactgaaatgtaaatgtattgctTGGAATGTTTACTGTATGATTATTATTGTGTGTTTAAAGGTTTCTCTGAGCGCTGAATAAAACTTATAGATGTCATACATCAGTAGCAGCa
>XM_022678078.1
CGATAGTCACGCCCCGCGGAGCAGGAAGCTGTGACCTGTGTATGAGGACGAAGTTTAGAGGTGTTCTGTGTTCTTTCCTCTTGTTGTGTTACTGTGAGAATAAATAAACGCTAGAGAATGCTGGTGAACGCCTCTCAGCGCGGTGTTCTGTCTCTGGGCGCTGTGGAGAGCGTTAGTAAGCGCTGCTGGTGCTGCTCGGTCTGTGGGAGTTTGACCCGCGGGGGACTGAGGCTTTCTCCACGCCGCGCTGCTGCTCTGAGGCGGGACGGCCGCGCAGAGCTCCCCCGGCCTCCGACACCGGTACCGGGGGTGGATAAACACAGCGCTGAGCTTCGGCTGGAGTCGCCCGCTCCCCTCAGACAGTCCCTGCTGTGGCAGAAAGGAAAATCTCACCTCAGTCTGGTAGTTGgaccttttttaaaaaggacTCAGTCTGGTCCTGGGACGGAGAGCGTGTCTATACTGAAAGGCCTGCGGTGgctgctgttcagagAGTTGAGCACCTCCAACAAAGTCATGCAGTATGATCTGGGTTCGAGAAACCTTGAAAAGTCTGGCCACAAAAAGCTCATGTTTGATACACACGCAATGTTTCAGTATTTGGAAGCCAGTGGGTTCACAAGCCAGCAGGCAGAGATTATCATCAAGATTCTGGTCAACACAACCAACACCAACATGGATATCATGTACAGTGATATGGTCACAAAGACTCAGCATGAAATCATGTTGCAGAAGGTAATGTCTCACATTACTGCAGTGAAAAAGGACATGATTATCTTGGAAAAAAGCGAGTTCTCTGCGTTACTGGCAGAAAATGATGATATGATGAACAAAGTACGTGTGGACAACAAGTTGGATATGAACTTAGAAAAAAGTCAAGTAAAGGAGATGAAAGCAGAGCATGAAAAGAAGCTGCTGGAGACAAGGAACGAGATGATCGAGATGcttgcaGAACAAGAACGCCATGTGACTCAGAATAACGTGAAAATCGACACAGAAGTTGCCGGCCTGAAAACCATGCTGGAGTCCCACAAATTAGACAGTATCAAATATCTGGCAgGGTCAGTGTTCACATGTCTCACTGTAGTGCTGGGATTCTTTCGAATATGGATGTAAACTGGTGGCTGTGTCAATACTTAAGGATGATTTCCATAACAAAAGAACAACAAAGCCAGAACTGGAACTGTTGTTAGTTGTATTTGTCTGGCTCGAACATTCCTGATTCTGCCTACATTTATGCACTATTTTTGCTGGTGATaccagtttttttattgttcagttAAATCATGTAATTACAATGCACAGAGTAAACAGTTTAAAGGTGCCTTAAAATGGAATGTATTTCTCTTAGCATAATGCAAATCTTAGAAACATAAACAAATCTGAGCAGTGtgacaagccaattgcaaaccCCCAAAACTGTTACTAGCAGTCCAAGATGGCGGCATGGTAAAACACAGAGGACATGTCTCatcttttgtgtgtttaagaATGAACACCACGGTCTTCGAATGTGGaataaggcgctgccactatgatcaggagatcaccggttcgaatcctgtttatgcagcttgccatcgactaccagagccctgagacagcacagttggccttgctctctctctgggtgggtctCTCCCCCATCACTCTTAGAGTGAAATCGATCAGTACAGggtatctgtgagctgatgtatcggaatcgagttgctgcgctttcctccgagcaggctgtgatgctactcggaaatgctgcatcagcagcagttcaaaaagaagccgtggctgacttcacatgtatctgaggaggcatgtgttagtcttcaccctcctgatgcTGGGACATTACTAGAAATGGGGGgactcctaatgagtgggttggataattggctgtgtaaaatgggataaaaaaaaataaaattaaataaataaaattatataaaaaagaatgaaCACCACAAATGTTTTAGCCAGTTGTGCAATGACCAATGCATCAAGAACAGTGCCTCTATGTACACAATGTGTACTGGCTTGAACACAATATGCATCATAATACTGGGATTACTATTCATTTTATCACAGTATATTACGTAAGAACCTGATTTATTGTAAAAACCGACACAATCATATTtctttttccatattttttgaaaaatttGCTTTTTATCCaaacagaacagtgggatctaatgaGAGAGTACAATAGTGTCATTTAGCGGGGTTTAAACACTACACagaatgaaccactgtctgtcACCAATTcttacataattaataattaaatatctgtgtttttaaaaaacgatACAGTATTACAATATTGATACTTTCTTGCAACCCTTGCTAACTTCACTTTAAACTGAGAGGGTAGCATCACTATCTAGTAGAATTGCTCTGGTAAAATTGAAAGCTGTTAATTTTATGTGAACCATCACTGTGGCTAGCTGGTTACCCGAGCTCATTAAATTATTCACATAAACAGGACTAAAAGCTTGTTTAATTCTTGAAAGGGTTGTAAATGGGCTTAGTCACACATCATCTATTTAGACACCAGATAACAGTTTACAACACTAAATCAATGCATCTTGTGACAACATTTAAgactaatattaaaataaaggacaaaaaatatgcaaaataataGATGAGCTGTGTATGATACCAAAGATTATCATTTTGTGTGTACATATAGATGTATATGCTTAGGTCTACACTTGCCTTTCactgaaatgtaaatgtattgctTGGAATGTTTACTGTATGATTATTATTGTGTGTTTAAAGGTTTCTCTGAGCGCTGAATAAAACTTATAGATGTCATACATCAGTAGCAGCa

Function

NR:

description
PREDICTED: mitochondrial calcium uniporter regulator 1-like isoform X3

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0051287 NAD binding molecular_function
GO:0004449 isocitrate dehydrogenase (NAD+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K22137 MCUR1; mitochondrial calcium uniporter regulator 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260197.3 True 2878 mRNA 0.42 9 14461990 14472520
XM_022678078.1 False 2836 mRNA 0.42 8 14461990 14472520

Neighbor

gene id symbol gene type direction distance location
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding upstream 3703 14452340 ~ 14458287 (+)
scrib scrib coding upstream 53590 14272829 ~ 14408400 (+)
LOC103037989 puf60,LOC108268151,LOC107598708,LOC107742128,LOC107659444,LOC105889354 coding upstream 192084 14256872 ~ 14269906 (+)
LOC111194316 NA coding upstream 242643 14216110 ~ 14219347 (+)
LOC103035806 ctnnd2,ctnnd2b,LOC107746909 coding upstream 319379 13938285 ~ 14142611 (+)
LOC111194238 NA coding downstream 5034 14477554 ~ 14488421 (+)
LOC103041924 NA coding downstream 15911 14488431 ~ 14500190 (+)
LOC111194240 NA coding downstream 39273 14511793 ~ 14512939 (+)
LOC111194241 NA coding downstream 42950 14515470 ~ 14517074 (+)
trmt10b trmt10b coding downstream 75588 14548108 ~ 14551573 (+)
LOC111194202 NA non-coding upstream 19658 14440905 ~ 14442332 (+)
G141467 NA non-coding upstream 225338 14222563 ~ 14236652 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding upstream 247726 14210460 ~ 14214264 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding upstream 253174 14202989 ~ 14208816 (+)
G141413 NA non-coding upstream 270937 14185207 ~ 14191053 (+)
G141501 NA non-coding downstream 12500 14485020 ~ 14486617 (+)
LOC111194203 NA non-coding downstream 44826 14517346 ~ 14518444 (+)
G141514 NA non-coding downstream 73277 14545797 ~ 14547039 (+)
G141516 NA non-coding downstream 80113 14552633 ~ 14553089 (+)
G141525 NA non-coding downstream 92864 14565384 ~ 14567961 (+)
G141410 NA other upstream 260992 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 603385 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1601663 12842798 ~ 12860327 (+)
G141086 NA other upstream 1718537 12741473 ~ 12743453 (+)
G140930 NA other upstream 2080436 12378996 ~ 12381554 (+)
G141495 NA other downstream 55620 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 306661 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 582137 15054657 ~ 15056973 (+)
G141791 NA other downstream 756190 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 913096 15385616 ~ 15401904 (+)

Expression


Co-expression Network