LOC103044680


Basic Information

Item Value
gene id LOC103044680
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 15481787 ~ 15499505 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602106.2
AAGCAAAACTGCAGCTTTTCTCCATCAGATCAAAAGAAATTTGCATCTGACAGGAAATCTTGCAGTTACTAAGTTCAGACGAAAACACAGCCGAGAGTAAACAGGAACCCCAACATTTCACTGACGTTTCTGCGACCCGAAAAAAgCCTTCCTGTAAAGATGTGGCGCATCGTATATACCATCAGCATTGCCTTCACCCTCACGAAATACTCTGCAGCTGATGAAACTCCAGATACTCTGCATTTCCAGAAGTATGCGCTCCTGGGAAGTACAGTCTCCCTCTCGCTTCAGGGACACACACAGGATCTGACTGATATCAAGTGGAGAAAAGGAAAATTATTAGTTGCAAACAGCAAATCAGTTAGACCAAAGTTTATTCAAAAATTTCATCTGAATGCCACCGATAGctccttaattattaaaaacctAACTATGAATGACAGCGACCATTATCGAGCTGAAGCTGGAGAATGGGAGAAGGCAATCTTGGACTATCATCTAATAGTTGAAAGAATGGTCTCAAAGCCAATCATTGAAACCAATCGCAACCAAACAGCAGTAAATTCCACTGATGACTGTCAGATCTCAGTTAAATGTTCTGTTGATGATGAATCAGTGATGTACGTCTGTGAGAACCGGAGCTGCACTTCCTCACAAACCCAAACCCAACAGACCAAAGTTAACATCACTGTTGCTGTAACTGATAGTAGAACTGTGGAGTGTACAGCCAGTAATCATGTGAGCACAATGAAGACCTCATTAGCCATCGGTGACACCTGCTCTGAAAAAATTCCTGCGGAAAACAAATCAAGTTTCTCTTTGTATTTGGCAATTCTAATAGGCTGCGTAATAGTGGGCATAATAGTGGTCTGCTTACCAGTAATTGTCATTTCCAGAAAAAAGCCACAGCAGAAAGATTCTCATCCAGAAGCAGAAATAACcacagtgtacagtgtagtGAATAAACCACGGATTTCAACAGATACCAGCGCTGTAAATGAGACAGCATCCACAGTCTATGATGTTCCCTCAAAACGGGCTGTGCCTCTCCAAAGTGCCAGCGTTCAAATGCCACAGGAGACAAGAGAACAGCCCCTGGAGGGTCAACCCGTTACTGCAAACGCTGAAACAGAAGAGGAATCAGCGAATGATCCACAGCTCACAGTTTACTGGAAACTGGGGCAGAAATAACATCTGATTACAGTCTGATATAAAGCTCCGTTCTTCATCTGCATCAGTGAAAACCCTTATTTTTGTATAGTTTTATGCGTATTGAAGtgttgtactgtttttttttccaacaaactttttatatatatcatgTCTATAGTTATATAGgtttaaacacacataaaattgacttttggtgtagtaaaaaatgagaaaaagtacttacctttaatgaatagcacacctccgttctcccacagcattccgagatccagaaatcaGAACAGTCTGTCCAAACATCCCAATAGATTCTTTTTTCCATCATTATCCagcctcaaagtagctccacaccacCTGGCTAGAATCCgtagagccctgacatttaaaacgaggcattaataacttaaaa
>XM_015602107.2
AGATAGCTGGCAATGGAAATATGCTGTCAGAAGCAAAACTGCAGCTTTTCTCCATCAGATCAAAAGAAATTTGCATCTGACAGGAAATCTTGCAGTTACTAAGTTCAGACGAAAACACAGCCGAGAGTAAACAGGAACCCCAACATTTCACTGACGTTTCTGCGACCCGAAAAAAgCCTTCCTGTAAAGATGTGGCGCATCGTATATACCATCAGCATTGCCTTCACCCTCACGAAATACTCTGCAGCTGATGAAACTCCAGATACTCTGCATTTCCAGAAGTATGCGCTCCTGGGAAGTACAGTCTCCCTCTCGCTTCAGGGACACACACAGGATCTGACTGATATCAAGTGGAGAAAAGGAAAATTATTAGTTGCAAACAGCAAATCAGTTAGACCAAAGTTTATTCAAAAATTTCATCTGAATGCCACCGATAGctccttaattattaaaaacctAACTATGAATGACAGCGACCATTATCGAGCTGAAGCTGGAGAATGGGAGAAGGCAATCTTGGACTATCATCTAATAGTTGAAAGAATGGTCTCAAAGCCAATCATTGAAACCAATCGCAACCAAACAGCAGTAAATTCCACTGATGACTGTCAGATCTCAGTTAAATGTTCTGTTGATGATGAATCAGTGATGTACGTCTGTGAGAACCGGAGCTGCACTTCCTCACAAACCCAAACCCAACAGACCAAAGTTAACATCACTGTTGCTGTAACTGATAGTAGAACTGTGGAGTGTACAGCCAGTAATCATGTGAGCACAATGAAGACCTCATTAGCCATCGGTGACACCTGCTCTGAAAAAATTCCTGCGGAAAACAAATCAAGTTTCTCTTTGTATTTGGCAATTCTAATAGGCTGCGTAATAGTGGGCATAATAGTGGTCTGCTTACCAGTAATTGTCATTTCCAGAAAAAAGCCACAGAAAGATTCTCATCCAGAAGCAGAAATAACcacagtgtacagtgtagtGAATAAACCACGGATTTCAACAGATACCAGCGCTGTAAATGAGACAGCATCCACAGTCTATGATGTTCCCTCAAAACGGGCTGTGCCTCTCCAAAGTGCCAGCGTTCAAATGCCACAGGAGACAAGAGAACAGCCCCTGGAGGGTCAACCCGTTACTGCAAACGCTGAAACAGAAGAGGAATCAGCGAATGATCCACAGCTCACAGTTTACTGGAAACTGGGGCAGAAATAACATCTGATTACAGTCTGATATAAAGCTCCGTTCTTCATCTGCATCAGTGAAAACCCTTATTTTTGTATAGTTTTATGCGTATTGAAGtgttgtactgtttttttttccaacaaactttttatatatatcatgTCTATAGTTATATAGgtttaaacacacataaaattgacttttggtgtagtaaaaaatgagaaaaagtacttacctttaatgaatagcacacctccgttctcccacagcattccgagatccagaaatcaGAACAGTCTGTCCAAACATCCCAATAGATTCTTTTTTCCATCATTATCCagcctcaaagtagctccacaccacCTGGCTAGAATCCgtagagccctgacatttaaaacgaggcattaataacttaaaa

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042612 MHC class I protein complex cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602106.2 False 1579 mRNA 0.41 7 15481817 15499505
XM_015602107.2 True 1606 mRNA 0.41 7 15481787 15499505

Neighbor

gene id symbol gene type direction distance location
LOC103044992 kcnj10,LOC108440277,LOC107703868,LOC107728032,LOC107692845,LOC102205965 coding upstream 5572 15443821 ~ 15476215 (+)
trnae-uuc_20 NA coding upstream 67940 15413776 ~ 15413847 (+)
LOC103043450 LOC103043450 coding upstream 96881 15379678 ~ 15384906 (+)
LOC103043145 LOC108440275 coding upstream 103252 15375965 ~ 15378535 (+)
LOC111194243 NA coding upstream 106383 15367518 ~ 15375404 (+)
efcab14 efcab14,LOC106569140 coding downstream 1427923 16927428 ~ 16940368 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 1494834 16994339 ~ 17004804 (+)
LOC111194332 NA coding downstream 1735694 17235199 ~ 17304091 (+)
LOC103034870 NA coding downstream 3254302 18753807 ~ 18785358 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding downstream 3295398 18794903 ~ 18816397 (+)
G141755 NA non-coding upstream 2830 15080536 ~ 15478957 (+)
G141814 NA non-coding upstream 76667 15400974 ~ 15405120 (+)
G141795 NA non-coding upstream 218107 15262792 ~ 15263680 (+)
G141790 LOC108440271,LOC101884025,LOC107692834,LOC103376102 non-coding upstream 243601 15223590 ~ 15238186 (+)
G141788 NA non-coding upstream 258477 15218508 ~ 15223310 (+)
G141840 NA non-coding downstream 7845 15507350 ~ 15538748 (+)
G141845 NA non-coding downstream 15300 15514805 ~ 15532685 (+)
G141978 NA non-coding downstream 72073 15571578 ~ 15571813 (+)
G141981 NA non-coding downstream 981974 16481479 ~ 16481682 (+)
G142040 NA non-coding downstream 1287573 16787078 ~ 16787609 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other upstream 79883 15385616 ~ 15401904 (+)
G141791 NA other upstream 196330 15228710 ~ 15285457 (+)
G141740 LOC108440267 other upstream 424814 15054657 ~ 15056973 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other upstream 696975 14779181 ~ 14784812 (+)
G141495 NA other upstream 951491 14528140 ~ 14530296 (+)
LOC103022185 ankrd13c,LOC108436872,LOC105898977 other downstream 1448877 16948382 ~ 16967950 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other downstream 1472697 16972202 ~ 16985295 (+)
G142093 abcf3 other downstream 1558789 17058294 ~ 17073484 (+)
G142166 LOC108436878 other downstream 1703717 17203222 ~ 17204493 (+)
G142378 gpaa1 other downstream 3356731 18856236 ~ 18893509 (+)

Expression


Co-expression Network