LOC103037388 (LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467)


Basic Information

Item Value
gene id LOC103037388
gene name LOC103037388,LOC108434601,LOC108267726,LOC107675486,LOC105895467
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 31386254 ~ 31405358 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605548.2
aaattgaagtgttctcttgtttttttcagagctgtagataatAGGTGTAGACACAAAAAGATTGTCTTAATGTTATCTTTGATTGGTGTAAATGTGACTGCTTGAAATGTATTACTTCAGCAGTGTCAAAGTCCAAAGCAGAGGCAATAGCAGCTGGTAGAATAGAGCAGAAGGCAGAACCTGTCACACCTGCAGGTAGACCGAGTCTGACTTTCATTCTCATATGCATAAACAGGAAATAGAGCAACCAGCTCTGAGACTGAGCAGAGAGACTATTAGTACGGCAGCAGGCACAAGTTTCATTTTAGTCTTTCTCTGCATGTTTTGTCGTTCACACTCCGTTAGTCTTTTCCTGACTTCCTGTTTCTCATCTTCTTCTCAAATGGGAGGCGCAGCAAGAAGCAGCACTTTCAGACGTTCAGCTTAAGCGGAATAACCTAAAAGATGGAGTTTGCCTGCAGTCATGTTGTTTGCAACTGGAGGCCTGAGAGTCTGGCTGAAGGTCTTTCCCAGACACTGCCCTGTACTTTGTCCAGAACACATTCTGAGCATCCTTACGACAACCGCATCGCTGTCGTTCCAAATCCAGTTCCGTCTTTAGCACCACCGCCTGTACCACCTCGTCgtttaacacaaaaatacacaaatacacaaccCATCTCAATGCCGCCTCCAGTACCCCCTCGAGGGCTGGAGGCTAAAGGACAGACTCGCCTTAAAGCCAACGTAAATGTAGTGTCACTCAAAGTAGGAAACCTTGTGGACATCAGTAAAGCATCCAGTATACAGAGCAACCAGAAACCAGTGCGCTGTGGGAAGTGTAGAGCGGTGATGTCGGCAGTGAACAACTCACAAACCTACCCAAATGTAACTACATGGTGCTGTGAGTTCTGTGGTAAGGAGAATATTCTCTCTCAGAGTGAAGCAAAAATGGGACGCTCTCCTCTGTGGTCTAGTCTAGGCAGAGACGTGCTGTATGTGGATGAGGAGATAGATGCAGACTACATGAACCTCGAGGACATGCTGGTGGTTTTCTGTGTTGATATTTCTGGTAGCATGAGCgtcacttctgagGTATCTCCAGGTAACAGCATGAGATCGCCCACGTATGTATCACGACTGCAGGGTGTTCAGGAGGCCCTGCAGATGGCACTATCCTCCCTGCAAAAGTCTTCACCTCACCGTCGAGTAGCACTAGTCACTTTTAATGATGAGGTGACCGTGTACGGCGATGGTACAGGAGTTCCTCTCTCTGTACGGGATTGGGCTCTAGTGGATTATGATCACGTCAAAGAGCAGGGGGAGAAGTACTCCACACCACACTGCATTGCAGAGACCTACCAATTCCTAACACAGAGAGTTAAAGAATTAAGAGAGCATGGAGCCACTGCTCTGGGCCCCGCCGCACTCATCTCTGTTGCCATGGCCTCTCAGTTTACCGGGTCGAAGGTTATAATTTGTACAGATGGTCGGGCCAATATAGGCCTGGGCCAGTTAGAACCAGAATCTGCtcattctcctccaccatcaCTATATTTCTACAACCAGTTAGCCACTCATGCAGCCGAAAAGGGAGTGATTGTATCAGTGATGACATTTGAGGGAGAGGATTGTCGGCTGGCGGAGGTGGGGAAGCTGGCTGATCACACAGGAGGCCGGATCAACATAGTCAACATCGGCACAGTTGCTACAGAAATTCAGACTGCTCTGGCTGACAACGTCTTAGCGACTAATGTTGTGTCAACTCTAATAGCACCGGAAGGCGTGTATTTTCCTTATGAAGAGGAAAATCACAAGCTGGTGAGAGAGATTGGCAATGTCACAGATGGAGTAGAAATCACTTTCCAGTTTGCTGTCAGACCTGACAAAGTGGACAGTTTTCAGAGAAGGGATCGGGTGCCCTTCCAGCTGCAGCTGTCTTTTAAGACACGAGACTTGAAGAAAGTGACCAGAGTGATCTCTCAACAGAAGCGTGTGACAACCAGCAGCTGGGTCTGGGCAGGAAGTCTGAACATGTCTGTGCTGGGGGTTCACTGTGCTCAGCTGTGTGCCAGGCTCACCATGGAGGGCAGGATACAGGAGGCTCAGAGTCAACTCAAAGCCCAGCAGGACCTTCTCAAAGACATCAGTGAACAGAAGCCAATTCCTAAAGAGGAGAGCATCTATGGTAACTGGATCAGCACCATGAGCATGATCTGTGATGACCTCACCATGGACACACAGcaggatAGTACAGAAGACACCACACTGCTTGCCAGCCGCAAACCTTCCACGGGTCTGTCGGATGAGGCAGCGAAGGTGGTGTACCAGATGAAGAGAGCGAAAAGTGTCGGACAAAAGGGCCGGAAGGTGGCCGTGTTGGAAAGCTGAAATGGCGGTTTTGGCTTCATGCACGggttgcaaagaaaaaaaaaagtgttctttaTCAAGACGTATGGATATGCACTTACATGTCAAATGCCAAGGGACACAAACTAGTATCacgttccatgacttttgccaagtTCCATGAAAGGTGAATAACACTGCATTGAATATGGGTGTGATGACTGACAGAGTTGCTGGTCTGTTCGCCATCGCCTGGACaaattctagccagacaatGACGATCACAATTATTACCACCTGCTGCCACTGTCCTCTGTGGGTGATAgtgccttctatgacatattccaCACATGctacacacatgacactgtggatcaatgAATGTTAAATGCAGGTATGGGCTGAACTGAAAGAAACCTATCTATCCAACTTCAACTCATTCACAGTGCTTTGACATGAGCATGCCCGggtactcacaagataacacctcacaacttatacaggtgtggacaATCCAAAGCCGTCCCCTATGGTACCACTAAATGATCACATAGTGATTTACATTCTGCTGTTTTATGACAtcattgtataaaaaaacaatggctAGTGTCAGAACAAACTTTTGTAATAGTTGTAGTATAATATATTGCCAAATAGAGTTACAAAAAACTATACTTTAGCACTGTATAGATCTTCCTTTTGCTTAGAGCTTAGAATAGTGCTAACAGTAAATTCTCTACTCCAGAGAATGtagtataatattttatgtttgactttaaaactaTCCATGTATCTGTAATGCAGTATTGCAACTAATATACTACATCTCAGAAggtttataaacataaataactcAAACTGATTTCTGCTTTAATGAAAGcagatatat
>XM_015605549.2
attgaagtgttctcttgtttttttcagagctgtagataatAGGTGTAGACACAAAAAGATTGTCTTAATGTTATCTTTGATTGGTGTAAATGTGACTGCTTGAAATGTATTACTTCAGCAGTGTCAAAGTCCAAAGCAGAGGCAATAGCAGCTGGTAGAATAGAGCAGAAGGCAGAACCTGTCACACCTGCAGGTAGACCGAGTCTGACTTTCATTCTCATATGCATAAACAGGAAATAGAGCAACCAGCTCTGAGACTGAGCAGAGAGACTATTAGTACGGCAGCAGGCACAAGTTTCATTTTAGTCTTTCTCTGCATGTTTTGTCGTTCACACTCCGTTAGTCTTTTCCTGACTTCCTGTTTCTCATCTTCTTCTCAAATGGGAGGCGCAGCAAGAAGCAGCACTTTCAGACGTTCAGCTTAAGCGGAATAACCTAAAAGATGGAGTTTGCCTGCAGTCATGTTGTTTGCAACTGGAGGCCTGAGAGTCTGGCTGAAGGTCTTTCCCAGACACTGCCCTGTACTTTGTCCAGAACACATTCTGAGCATCCTTACGACAACCGCATCGCTGTCGTTCCAAATCCAGTTCCGTCTTTAGCACCACCGCCTGTACCACCTCGTCgtttaacacaaaaatacacaaatacacaaccCATCTCAATGCCGCCTCCAGTACCCCCTCGAGGGCTGGAGGCTAAAGGACAGACTCGCCTTAAAGCCAACGTAAATGTAGTGTCACTCAAAGTAGGAAACCTTGTGGACATCAGTAAAGCATCCAGTATACAGAGCAACCAGAAACCAGTGCGCTGTGGGAAGTGTAGAGCGGTGATGTCGGCAGTGAACAACTCACAAACCTACCCAAATGTAACTACATGGTGCTGTGAGTTCTGTGGTAAGGAGAATATTCTCTCTCAGAGTGAAGCAAAAATGGGACGCTCTCCTCTGTGGTCTAGTCTAGGCAGAGACGTGCTGTATGTGGATGAGGAGATAGATGCAGACTACATGAACCTCGAGGACATGCTGGTGGTTTTCTGTGTTGATATTTCTGGTAGCATGAGCgtcacttctgagGTATCTCCAGGTAACAGCATGAGATCGCCCACGTATGTATCACGACTGCAGGGTGTTCAGGAGGCCCTGCAGATGGCACTATCCTCCCTGCAAAAGTCTTCACCTCACCGTCGAGTAGCACTAGTCACTTTTAATGATGAGGTGACCGTGTACGGCGATGGTACAGGAGTTCCTCTCTCTGTACGGGATTGGGCTCTAGTGGATTATGATCACGTCAAAGAGCAGGGGGAGAAGTACTCCACACCACACTGCATTGCAGAGACCTACCAATTCCTAACACAGAGAGTTAAAGAATTAAGAGAGCATGGAGCCACTGCTCTGGGCCCCGCCGCACTCATCTCTGTTGCCATGGCCTCTCAGTTTACCGGGTCGAAGGTTATAATTTGTACAGATGGTCGGGCCAATATAGGCCTGGGCCAGTTAGAACCAGAATCTGCtcattctcctccaccatcaCTATATTTCTACAACCAGTTAGCCACTCATGCAGCCGAAAAGGGAGTGATTGTATCAGTGATGACATTTGAGGGAGAGGATTGTCGGCTGGCGGAGGTGGGGAAGCTGGCTGATCACACAGGAGGCCGGATCAACATAGTCAACATCGGCACAGTTGCTACAGAAATTCAGACTGCTCTGGCTGACAACGTCTTAGCGACTAATGTTGTGTCAACTCTAATAGCACCGGAAGGCGTGTATTTTCCTTATGAAGAGGAAAATCACAAGCTGGTGAGAGAGATTGGCAATGTCACAGATGGAGTAGAAATCACTTTCCAGTTTGCTGTCAGACCTGACAAAGTGGACAGTTTTCAGAGAAGGGATCGGGTGCCCTTCCAGCTGCAGCTGTCTTTTAAGACACGAGACTTGAAGAAAGTGACCAGAGTGATCTCTCAACAGAAGCGTGTGACAACCAGCAGCTGGGTCTGGGCAGGAAGTCTGAACATGTCTGTGCTGGGGGTTCACTGTGCTCAGCTGTGTGCCAGGCTCACCATGGAGGGCAGGATACAGGAGGCTCAGAGTCAACTCAAAGCCCAGCAGGACCTTCTCAAAGACATCAGTGAACAGAAGCCAATTCCTAAAGAGGAGAGCATCTATGGTAACTGGATCAGCACCATGAGCATGATCTGTGATGACCTCACCATGGACACACAGgatAGTACAGAAGACACCACACTGCTTGCCAGCCGCAAACCTTCCACGGGTCTGTCGGATGAGGCAGCGAAGGTGGTGTACCAGATGAAGAGAGCGAAAAGTGTCGGACAAAAGGGCCGGAAGGTGGCCGTGTTGGAAAGCTGAAATGGCGGTTTTGGCTTCATGCACGggttgcaaagaaaaaaaaaagtgttctttaTCAAGACGTATGGATATGCACTTACATGTCAAATGCCAAGGGACACAAACTAGTATCacgttccatgacttttgccaagtTCCATGAAAGGTGAATAACACTGCATTGAATATGGGTGTGATGACTGACAGAGTTGCTGGTCTGTTCGCCATCGCCTGGACaaattctagccagacaatGACGATCACAATTATTACCACCTGCTGCCACTGTCCTCTGTGGGTGATAgtgccttctatgacatattccaCACATGctacacacatgacactgtggatcaatgAATGTTAAATGCAGGTATGGGCTGAACTGAAAGAAACCTATCTATCCAACTTCAACTCATTCACAGTGCTTTGACATGAGCATGCCCGggtactcacaagataacacctcacaacttatacaggtgtggacaATCCAAAGCCGTCCCCTATGGTACCACTAAATGATCACATAGTGATTTACATTCTGCTGTTTTATGACAtcattgtataaaaaaacaatggctAGTGTCAGAACAAACTTTTGTAATAGTTGTAGTATAATATATTGCCAAATAGAGTTACAAAAAACTATACTTTAGCACTGTATAGATCTTCCTTTTGCTTAGAGCTTAGAATAGTGCTAACAGTAAATTCTCTACTCCAGAGAATGtagtataatattttatgtttgactttaaaactaTCCATGTATCTGTAATGCAGTATTGCAACTAATATACTACATCTCAGAAggtttataaacataaataactcAAACTGATTTCTGCTTTAATGAAAGcagatatat

Function

NR:

description
circularly permutated Ras protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605548.2 True 3217 mRNA 0.46 20 31386254 31405358
XM_015605549.2 False 3212 mRNA 0.46 20 31386254 31405356

Neighbor

gene id symbol gene type direction distance location
LOC103038032 NA coding downstream 1945 31375693 ~ 31384309 (-)
ovol1 ovol1,LOC103038355,LOC108434587 coding downstream 17558 31361438 ~ 31368696 (-)
mus81 mus81 coding downstream 27042 31350210 ~ 31359212 (-)
LOC103038661 LOC108434603,LOC107595313,LOC108268335,LOC107731925,LOC793560,LOC107675495,LOC107738035,LOC107683530 coding downstream 36305 31340630 ~ 31349949 (-)
LOC111194379 NA coding downstream 75942 31307953 ~ 31310312 (-)
tkfc tkfc,LOC107094664 coding upstream 2004 31407362 ~ 31417706 (-)
LOC103021832 NA coding upstream 106957 31512315 ~ 31517985 (-)
slc7a7 slc7a7,LOC107738042,LOC107683525,LOC107558406,LOC107731885 coding upstream 123244 31528602 ~ 31546260 (-)
ttc5 ttc5,LOC107738047,LOC107683587 coding upstream 161560 31566918 ~ 31572825 (-)
LOC111194360 NA coding upstream 186933 31592291 ~ 31594387 (-)
G145798 LOC108434604 non-coding downstream 93865 31287506 ~ 31292389 (-)
G145777 NA non-coding downstream 219506 31166297 ~ 31166748 (-)
G145776 NA non-coding downstream 221569 31162519 ~ 31164685 (-)
G145775 sat2,LOC104927601,LOC100692450 non-coding downstream 225253 31158374 ~ 31161001 (-)
G145759 NA non-coding downstream 239765 31145961 ~ 31146489 (-)
G145895 NA non-coding upstream 76214 31481572 ~ 31481995 (-)
G145902 NA non-coding upstream 84465 31489823 ~ 31490380 (-)
G145917 NA non-coding upstream 155620 31560978 ~ 31561283 (-)
LOC111194380 NA non-coding upstream 179714 31585072 ~ 31590976 (-)
G145929 acox3 non-coding upstream 194138 31599496 ~ 31605450 (-)
LOC103041855 LOC108434590,LOC106577649,LOC105907155,LOC108267266,LOC107707052,LOC107738084,LOC107595290 other downstream 158676 31223447 ~ 31227578 (-)
LOC103030652 NA other downstream 735948 30644395 ~ 30650306 (-)
G145141 NA other downstream 2442193 28938993 ~ 28944061 (-)
G145135 eif4a1,if4a1,eif4a1a,eif4a1b,LOC108443969,LOC107561738,LOC107687036,LOC107704251,LOC107593628,LOC105895537,LOC107098142,LOC108415734,LOC105007919,LOC106560692,LOC106602896 other downstream 2493256 28886240 ~ 28892998 (-)
G145101 NA other downstream 2570120 28812741 ~ 28816134 (-)
G145899 NA other upstream 78585 31483943 ~ 31486070 (-)
LOC103036756 LOC103036756,LOC108434598 other upstream 94558 31499916 ~ 31502661 (-)
LOC103035326 sall2 other upstream 145171 31550529 ~ 31558461 (-)
cckar cckar,LOC106608554 other upstream 465699 31871057 ~ 31885409 (-)
G146175 pcdh7,LOC107568147,LOC107753999 other upstream 1694939 33100297 ~ 33105587 (-)

Expression


Co-expression Network