LOC111194192


Basic Information

Item Value
gene id LOC111194192
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2920719 ~ 2922118 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677665.1
agatacagatacagagagagtgacCCTGAGATACTCTGCTGTTTTAttatgaatgagagagaggaagttCTGGAGAGCTGCAGTATTGGACCTGAGGGATGGACAGATCTGAAGAAGGAATGACTGAAGAGTGAAGCAGTGTGAGATGTCTGAGTTGGAGCAGCTGCCCAGGGCGCACCTCGCGGCGACCCTGCAGCACTGGCGGCGGGATGCGGAGGACCCGGTGGAGCTGTGGTGGTTCGGTGACCCCTGCGTCTCCCTGCTCTGTTACTGCTCCTCTGTGGCGCTGGTTCTGGGCCTGGGTCTGGCCGGGGTCTTCGTGCTGTCCTCGGCCGGCTCCGTCACCGGCCCCTCGGCTCTGTGGCGGCTGGCCGTGGGCTCCACGCTCTGCCTGCTGGCGCTGGCCGTCCTGCTGAAGCAGCTGCTCAGCTCGGCCGTGCAGGACATGGGCTGCATCCGGAGCCGGAGGAGGATCCTGCAGCTGCGCAGCGGGGGCTTCATGGACCCCCTGCTCCTGCTGGCCACCGGTCTGGCCCTGATGGTCTGCGGTGCTGCACTGCTGCTGGGCCTCAGCCGCTCAGAGACGCTGATGTCCGGGACGGTGCTGCTGTCCGGCGGGGCTGCTGTGGTTCTGGCTGTGGTGATCTATGGAACAGTGGTGTTTATAAAGAAACGTAGGAacaggaggaggatgaggaggagaagagtagtgaggaggagaaggagggtgAGAGTGTACACAGTCACAGGACAGAGGAGCCAACCGTGGAGAGTCTCGGCCTCCAGCCAAGCAAGTCTGATATAAGACAATGAAAAAA

Function

GO:

id name namespace
GO:0030537 larval behavior biological_process
GO:0008345 larval locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677665.1 True 818 mRNA 0.61 2 2920719 2922118

Neighbor

gene id symbol gene type direction distance location
LOC103044744 NA coding upstream 157375 2747818 ~ 2763344 (+)
LOC103044144 LOC108430743 coding upstream 209003 2689286 ~ 2711716 (+)
LOC103044323 LOC108430700 coding upstream 327028 2589517 ~ 2593691 (+)
LOC111194265 NA coding upstream 356672 2562135 ~ 2564047 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 390556 2522508 ~ 2530163 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 21018 2943136 ~ 2978445 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 95462 3017580 ~ 3025513 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding downstream 116301 3038419 ~ 3049776 (+)
LOC103024237 NA coding downstream 141809 3063927 ~ 3069951 (+)
LOC103045957 LOC103045957,LOC108430690 coding downstream 183328 3105446 ~ 3108504 (+)
G138080 NA non-coding upstream 21188 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 25309 2892643 ~ 2895410 (+)
G138074 NA non-coding upstream 57431 2862962 ~ 2863288 (+)
G138073 NA non-coding upstream 71607 2847557 ~ 2849112 (+)
G138058 lrp8 non-coding upstream 151795 2765320 ~ 2768924 (+)
G138092 NA non-coding downstream 74436 2996554 ~ 2997077 (+)
G138123 NA non-coding downstream 188284 3110402 ~ 3114615 (+)
G138524 gipc2,LOC108430720 non-coding downstream 234638 3156756 ~ 3175364 (+)
G138534 NA non-coding downstream 334783 3256901 ~ 3296382 (+)
G138598 NA non-coding downstream 570578 3492696 ~ 3494363 (+)
G137929 NA other upstream 896333 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1069406 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1420763 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1880749 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1932081 980980 ~ 988638 (+)
LOC103024858 NA other downstream 159938 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 193302 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 879735 3801853 ~ 3839372 (+)
G138701 NA other downstream 911137 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 1173879 4095997 ~ 4102241 (+)

Expression


Co-expression Network