LOC103026570


Basic Information

Item Value
gene id LOC103026570
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7721740 ~ 7729314 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677668.1
TCCGGGTTTGGTGCTGCTCGGTTCTCCTTTATTCACCAGAATGGAGGAAACGGGTGAAGAGATCTCGGGTCAGACTCTAGATgtaagtgctgctgctgctgaagtcTCAGCTGCAGGCGTGGAGTGTGATGCGTGTGATGGACGGAAGCGTAAAGCTGAGCAGACCTGTTTGGAGTGTTTGGCCTCGTATTGTGAGCCTCATCTGGACCTGCACAACAGACTGCATGGTGGGAAAAGACACAAGCTGGTGGAGGCGActgaaaagctgcaggagaTAACCTGCCCCAAACACGgaaaactgcttgaggtcttcTGCCGCACGGATCAGCAGTGTATCTGTTACCTGTGCATCACCGACGCCCACAGGACACATGACGTCATCTCCATCGAGGTGGAGGTGGCTGAGGCACATatGAAGACTGGgatgatacagagagagatcgCCAACAGAGTTAAAACCAGAGAAAAGGAAGTGCAAGTAATACAACAGGCAGTTGAAGCATTCAAGATATTGGCCGAGAACGCAGTAGAGAAGAGTGAGAGACTGTTTAGGGAGATGATCCAGTCCATGCAGGAGAGGCAGTGTACAGTAAAGGATATGATCAGAGCTCAGGAGGAAGATATGGTGAAGAAGGCTACTGAAGTCCTAGGCAGACTGCAGGAGGAGCTGGGTCAGCTGCAGAGGAGAGACGCTAAACTACACTACCTCAAGGAGATCTCTCAAGCAAACCAGAACATCCTGTTTTTACTGCATTTTTTGTCTGTTCCCGCCCTTCTTCCATCCATGGATGCTGCTGTGTTCTTTGTACATCCGTACTCGTCTTTTGAGTTTTCTGCTGAAGCTGTAGCAGATCTCATCAAACAGCTGGAGCACATCTGCCAGTCCTGCTTCACCACAATCTCTGAGAACGttagaGAAGCAGTAAGTCTTCCAGCACCAGCTCTGAAGACACGGGAGGACTTCTTACAATATGCGTGCAAGCTCACACTGAACCTCAACACAGCCCACGTATCCCTACGCTTGTCTAAGGAGAACAAGGAAGTGACCGCTGTAGTCGAGGCAGAAAACTATCTTGACCACCCGGACAGGTTTGACTGCAGAGCACAGATACTCTGCAATGAGGGTCTGCAGGGAAAAAGCCCCCAGTACTGGGAGGTGGAGTTTGGTGGCAGACACTGGGCTTGCATTGCTGTCTCCTACATCGGGATCCGTAGAAAAGGAAAGAATGGTCCACTCTTTGGTAGGAACCAAGATTCCTGGGGTCTGCGCTGTTACGCCACTTCCTACCATTTCTGGCACAAGAATAAAAGCGTAACAGTGGACTACGAGCAGCCATGCTCTAAAATAGGAGTGTATCTGGATCATGAAGCTGGTGTTCTAGCTTTCTACAACGTGGTGGACAGCATGAGCCTCATCTACAAGGTCCAGACTAAGTTCACTGAGCCGGTGCACGCTGGGTTTGGACTGGCAGGGAAAGGAACTCATGTCAAACTTTGTAATGTAAATGAGGATGATGTTATTggggaaaaaacactgttttcatACTTCAGCACATCAAGGCCACCATGGATGCAAAGTGCAGGGACGCATTAACAAATCTATCACACATTCACCAGCGCCAGCTTTATCCACAtcaatacagtaccagtcaaagtttgaacacatcATTCTACCAACTATTCTATAGCTCACCAGCGAGTTAGCGCAGCAGGATCCAACCATGTCCTTAAAAAAACTCAACTGAAATGACCAGTGACCTTAAAAAATGACCTTAAAATAtggttttatgaggtagagtcacttggaattcaggctttcagttaacagctgtgctgctgaactccctaagagttaattatttgaatttctagTCCATTGGGTTTGAATTGCTGTCTCCTACATTGGGATTAATAGGAAAGGAAGGAATGGTCCACTTTTTGGTAGGAACCGAGATGGGGTCTGCGCTGTTACGCCACTTCCTATAATTTCTGGCAtttctggaattcaggctttcagttaacagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677668.1 True 2026 mRNA 0.48 6 7721740 7729314

Neighbor

gene id symbol gene type direction distance location
LOC103026260 NA coding upstream 4491 7709316 ~ 7717249 (+)
LOC111194231 NA coding upstream 15198 7698361 ~ 7706542 (+)
LOC107197863 NA coding upstream 27964 7688107 ~ 7693776 (+)
LOC103025951 cdh24,LOC108442582,LOC107591395 coding upstream 67207 7335004 ~ 7654533 (+)
LOC103025648 NA coding upstream 471607 7230536 ~ 7250133 (+)
carmil3 carmil3,lrrc16b coding downstream 12409 7741723 ~ 7911771 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding downstream 219608 7948922 ~ 8014625 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 402972 8132286 ~ 8509323 (+)
LOC111194298 NA coding downstream 842519 8571833 ~ 8573911 (+)
LOC103021839 NA coding downstream 1293783 9023097 ~ 9025014 (+)
G139750 NA non-coding upstream 153170 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 181797 7539659 ~ 7539943 (+)
G139738 NA non-coding upstream 214383 7507052 ~ 7507357 (+)
G139737 NA non-coding upstream 245394 7475970 ~ 7476346 (+)
G139712 NA non-coding upstream 518484 7202932 ~ 7203256 (+)
G139781 NA non-coding downstream 291132 8020446 ~ 8020933 (+)
G139782 NA non-coding downstream 293069 8022383 ~ 8035973 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding downstream 309581 8038895 ~ 8042442 (+)
G139787 LOC108442840 non-coding downstream 332416 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 367984 8097298 ~ 8097743 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 675442 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 979671 6718238 ~ 6742069 (+)
G139282 NA other upstream 1454353 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1479169 6235434 ~ 6242571 (+)
G139268 NA other upstream 1557576 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1432019 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1490960 9220274 ~ 9223981 (+)
G140062 NA other downstream 1810461 9539775 ~ 9540810 (+)
G140103 NA other downstream 2014384 9743698 ~ 9745355 (+)
G140258 NA other downstream 2260604 9989918 ~ 9990296 (+)

Expression


Co-expression Network