LOC111194194


Basic Information

Item Value
gene id LOC111194194
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 9119168 ~ 9125820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677669.1
TTTGCTCCTATATAAGAGGGTACACATGCGTCTGGTTCATGTTTAAGAGTCCTGCCGTCATGTCTGCCAAAGGTGTGGTCAGCATCATCGTCGTCGCTTGCTGGGTTCTGTGCACGCTGTGTCCGACGTCCGCCGCATATGGTCCACTGACTCATGCGTGCTGTGTGAAGTACACTCGGACTCCTGTGCCCTTCAAACTGATCAAAGGTTACATCGAGCAGAGCTCCCTCGAAGTTTGCCGCATCAATGCCATCATATTCATCACCAAGCGCAACAAGAAGGTGTGTGTGAGCGCGGCAGACGGCTGGGTGAGGGACATACTGGAGCGCCTGAGcactaaaatgaaaaagatgTCAAAGCCTAACCACACCGGCGGCCTCAGCGTCGGCACGGCGAGGAGTGCCACCACAAGTTCGTAGAGTCTGCCTGCGCGACTGTACCTTCAGTTACCTTCAGTAACAGCTTCTACAAGCCTCTGTGACTGACCTATTTCTGATGTCCCTGCACTTTTTTATCTAAAGAACATAATCTATATGCAtatgcaattattattattttttatttgtgctttCTGTATAACACTTGCAGCTTGCAGCAttaaactatatattatataactcaCCTCAGGCTAAATTAAGGCTCTtgcactcttttttattatgattgttttgttttgtcagaTACAGGCAGTATCATTCTTTAGAACCATCATAATAATATTTGATTCTGTATTATGGACAGAGTCTGAACCAATAAAATGAGTCATCAAATAATGTATATGTATGAGTATGATGTAGTTTCATGTAAAGGCTGTAACATATACTGACTGTATCTTGaacaaaacaaagcagaaaaaagTACTCTGTATTTTCTGTCTGATAAAGACGTGTGACTTAATTGAcacttaattaaataaagtaaaaatctaAAACGTA

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677669.1 True 935 mRNA 0.42 4 9119168 9125820

Neighbor

gene id symbol gene type direction distance location
LOC103021839 NA coding upstream 94154 9023097 ~ 9025014 (+)
LOC111194298 NA coding upstream 545257 8571833 ~ 8573911 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding upstream 609845 8132286 ~ 8509323 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding upstream 1104543 7948922 ~ 8014625 (+)
carmil3 carmil3,lrrc16b coding upstream 1207397 7741723 ~ 7911771 (+)
LOC103039571 tmub1,LOC102788489 coding downstream 314872 9440692 ~ 9447133 (+)
klhl18 klhl18,LOC107733883,LOC107657445,LOC107730797,LOC107701005 coding downstream 587743 9713563 ~ 9740992 (+)
LOC103039200 zgc:136930,LOC108430265,LOC108267402,LOC107599883,LOC107657418,LOC107733879,LOC107730800 coding downstream 656909 9782729 ~ 9794211 (+)
LOC103038676 NA coding downstream 684762 9810582 ~ 9812214 (+)
fam217a NA coding downstream 704082 9829902 ~ 9847321 (+)
G139958 NA non-coding upstream 135450 8960530 ~ 8983718 (+)
G139954 NA non-coding upstream 302310 8816362 ~ 8816858 (+)
G139952 NA non-coding upstream 324961 8793861 ~ 8794207 (+)
G139903 NA non-coding upstream 574139 8544771 ~ 8545029 (+)
G139902 NA non-coding upstream 574437 8544307 ~ 8544731 (+)
G140006 NA non-coding downstream 100153 9225973 ~ 9226183 (+)
G140008 NA non-coding downstream 312406 9438226 ~ 9439147 (+)
G140012 NA non-coding downstream 313613 9439433 ~ 9440213 (+)
LOC111194300 NA non-coding downstream 321314 9447134 ~ 9452566 (+)
G140042 NA non-coding downstream 347996 9473816 ~ 9502247 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 2072870 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 2377099 6718238 ~ 6742069 (+)
G139282 NA other upstream 2851781 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 2876597 6235434 ~ 6242571 (+)
G139268 NA other upstream 2955004 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 35513 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 94454 9220274 ~ 9223981 (+)
G140062 NA other downstream 413955 9539775 ~ 9540810 (+)
G140103 NA other downstream 617878 9743698 ~ 9745355 (+)
G140258 NA other downstream 864098 9989918 ~ 9990296 (+)

Expression


Co-expression Network