LOC103033974


Basic Information

Item Value
gene id LOC103033974
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 24895613 ~ 24911351 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677676.1
GCCAGAATGGGTGGTCCCAGTTTGAATCTCGTTGTTTCAGGGTCTTCACCTCAACAACAAACTGGGCAGCTGCTGAGCAAAACTGTGTGGCTATGGGAGGACACCTTGCATCTGTGCACAGCAGTGAAGAGTACGCCTTCATGTTAAATTTACTGCTGAGTGTTGTAAATAGTGCAGCATGGATAGGTGGCACTGATGCTGCACAGGAGGGAGTGTGGGTGTGGACAGATGGGTCAGCATTTAATTACACTTACTGGGAAAGTGGGCAGCCTGACAATTTCATAAATGTTGAGAACTGTATGATGATGAATTGGGGAGCTGTGAATTTCAGGTCCTGGAATGATGCCCGGTGTCAAGAGAATTTTCCATCAGTTTGTGCccTGATAAATGGAACTTCTCATTCATCTTCACCAGagGTATCGTTTACATCAACTACTGTTCCCTCGAGTGATACTTCCACCACTGCTGTTCCCTCAAGTAATACTACTACAACTGCTGTTCCCTTGAGTAATACTACAACAATGGCTGTTCCCCCAAGCAATACTACTACAACTGCTGTACCCTTAGTGTGCCAGAATGGGTGGTCCCGGTTTGGATCTCGCTGTTTCAGGGTCTTCACATCATCAACAACCTGGACAGCTTCTGagcaaAACTGTGTGGCTATGGGAGGACACCTTGCATCTGTGCACAGCAGTGAAGAGTACACCTTCATTCTAAACCTACTGCTCAGTGTTACAAACAATGCAGCATGGATAGGTGGCACTGATGCTGCACAgGAGGGAGTGTGGGTGTGGACAGATGGGTCagcatttaattacagtaactgGGATTCTTGGCAGCCTGACAATTACCTGAATGTCGAGAACTGTATTCTAATAAATTGGGGAGGGGCATGGAATGATGGAGCCTGTTATGGTTATTATCCATCTGTTTGTGCCcAAACATTATACAAAAGTAATACAACCACGACAACTGTTCCCTCCACTACTGTTTCCTCTACTTCTGTTCCCGTATCAGTGATTAACGGAACTTCTCGTCCATCTTCACCAGAGAATGTGATGGTCATGCGCCTCAAAGTGAATTCAATGAAAGACTTGTTGGCAGCTAACAACTCACAGATACTCCTCCAACAGATCAAAGGGATGCTGACTGACGGAGGAATTCCCAATAATGCCACACTTCATTTGAGATCCATTAACAGGAAGTTGCCCTAGAAGTTGGAGGGTttggaaacattaaataaaatgttgcctattaaatatataatgaattGGATGTACTGTTCTTCCTGGAATATATACTGTAATCTACTTTACTGTCAAGTAATTAAACAAACTTCTGaattaaactaaagaaaaaagcaCATTAGTGACATTTACAAGCAGTGAACTGTGAATGCTACAACACTCCTGGCCATAAGGACATATTACAGTGTATTCACAAAGAGTTTTTGGGCCATACATCTATTCTTGCTTACTTATTGTACCTGTTTTTTTAACTCTTCATGATTCTTTCATGGTTCATTTTCTGATTTTCAAAGCACTAATGAGCATACAGTAGCTTTGCAATTATTAAAGTATCTATACcctttgaactttttcacattttgtcactatACAACCAcagatttaaatgtattttagtgaGATTTTAactggaacaaaaatgatacatggttttcatcTTATAAAAATCTGTAATGTATGACATGCAAAAATGTTCAGCCCCTTTcatccctaaataaaatccagtgcaatcta

Function

GO:

id name namespace
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677676.1 True 1760 mRNA 0.41 13 24895613 24911351

Neighbor

gene id symbol gene type direction distance location
LOC103035573 NA coding upstream 81859 24810977 ~ 24813754 (+)
LOC103035878 NA coding upstream 92627 24783105 ~ 24802986 (+)
LOC103037427 NA coding upstream 114421 24769347 ~ 24781192 (+)
LOC103036193 ybx2 coding upstream 161840 24713729 ~ 24733773 (+)
gps2 gps2,LOC106608669 coding upstream 191185 24693102 ~ 24704428 (+)
LOC103047006 NA coding downstream 22020 24933371 ~ 24949400 (+)
LOC103032175 LOC103032175,LOC108440822,LOC108242286,LOC106526854,LOC103359706,LOC107731898,LOC107679257 coding downstream 95671 25007022 ~ 25037257 (+)
LOC103031648 NA coding downstream 140684 25052035 ~ 25073701 (+)
eml3 eml3,LOC107558446,LOC107731903,LOC107679271,LOC107709062 coding downstream 178480 25089831 ~ 25170403 (+)
mta2 mta2,LOC107731904,LOC107679264,LOC107558444,LOC107660724 coding downstream 260687 25172038 ~ 25204911 (+)
G144113 NA non-coding upstream 44487 24850890 ~ 24851126 (+)
G144038 NA non-coding upstream 79529 24815864 ~ 24816084 (+)
G144014 NA non-coding upstream 205438 24689795 ~ 24690175 (+)
G144000 NA non-coding upstream 467115 24428062 ~ 24428498 (+)
G143973 NA non-coding upstream 612463 24282034 ~ 24283150 (+)
G144125 NA non-coding downstream 6335 24917686 ~ 24917987 (+)
G144132 NA non-coding downstream 24474 24935825 ~ 24936380 (+)
G144134 NA non-coding downstream 25064 24936415 ~ 24936800 (+)
G144139 map4k2 non-coding downstream 47360 24958711 ~ 24959188 (+)
G144160 NA non-coding downstream 164945 25076296 ~ 25080337 (+)
LOC111194253 NA other upstream 1060 24892992 ~ 24894553 (+)
LOC111188189 NA other upstream 18876 24856772 ~ 24876737 (+)
G144017 NA other upstream 184080 24707083 ~ 24711533 (+)
ppp3ca ppp3ca,LOC103369319 other upstream 293211 24436379 ~ 24602402 (+)
G143836 NA other upstream 979531 23827948 ~ 23916082 (+)
G144146 men1,LOC107660721 other downstream 87422 24998773 ~ 25004171 (+)
G144270 peli3,LOC103027529,LOC108440836,LOC108267165,LOC107660729,LOC107731914,LOC107679255 other downstream 464647 25375998 ~ 25378765 (+)
G144290 NA other downstream 560772 25472123 ~ 25474694 (+)
G144333 NA other downstream 741655 25653006 ~ 25654250 (+)
G144372 NA other downstream 875386 25786737 ~ 25788842 (+)

Expression


Co-expression Network