LOC111194211


Basic Information

Item Value
gene id LOC111194211
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 10200824 ~ 10201754 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677677.1
tgtgtgtgtgtgtgtgtttccagtgCTGATGGAACAGTCAGCAGTATTGAAGGAACAGCTAAAGCCAAAGATCCATCTGAACCAGCCAAGCTGGAGGTCAGCTTCTTTGAAGGAGTTCCTCCTGGTAATTACTGGGTTTTATCCACCGACTACGATAATTACACGCTGGTTTACGGCTGCACCAACTACCTGAACCTCTTTCATGTGGAGTTTGCCTGGATCTTGAGTCGTGGCCGATCCCTCCCGAAGGAAACTCTAGTTGAGCTGCAGGACATTCTGATTTCCAACGGCATCAAGATCGACACACTGACCTCCACTGACCAGGAGCTGAAGCGCTGCAGTGCCATGCCACAGTGAAGCCGGATGAAGATCTgctgtgtttaattatttatttatttgcttattaagTCTATTAAGGGCTAAATTATTCCGTGTGTGATATGAAACTAATGCATGAGTTCTGGAGTTCTGGAGTGTTCAGATATTTGCAGTTTAAGTGGTTAATTAATGTCCATCTtcttctatatttatattttatgtggaaAGGAGGAAATGTGTTTAGTAGAAACGTTCTGGTGTTCCTCTTTCACTTCAATAAACATTAAAGTACAACACAACCCA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677677.1 True 621 mRNA 0.43 2 10200824 10201754

Neighbor

gene id symbol gene type direction distance location
copa copa,LOC106600386 coding upstream 13137 10172944 ~ 10187687 (+)
pex19 pex19,LOC107591335,LOC107659417,LOC107684402 coding upstream 31127 10163810 ~ 10169697 (+)
LOC103041077 slc1a8b,LOC108444332,LOC107591333,LOC107557414,LOC107706395,LOC107738183,LOC105889468 coding upstream 53097 10130895 ~ 10147727 (+)
tmem53 tmem53,LOC107700979,LOC107730786,LOC107733878 coding upstream 296710 9897076 ~ 9904114 (+)
LOC103036973 LOC108430268 coding upstream 312247 9884209 ~ 9888577 (+)
samd7 samd7 coding downstream 17819 10219573 ~ 10234260 (+)
sec62 sec62,LOC107738178,LOC102781860 coding downstream 33968 10235722 ~ 10246002 (+)
gpr160 NA coding downstream 70260 10272014 ~ 10276220 (+)
phc3 NA coding downstream 149142 10350896 ~ 10369990 (+)
LOC103040576 slc4a2,LOC108413474,LOC105025010 coding downstream 283968 10485722 ~ 10524437 (+)
G140274 NA non-coding upstream 44776 10098168 ~ 10156048 (+)
LOC103034722 NA non-coding upstream 70780 10125320 ~ 10130044 (+)
G140255 NA non-coding upstream 258545 9941028 ~ 9942279 (+)
G140251 NA non-coding upstream 274248 9926309 ~ 9926576 (+)
G140249 NA non-coding upstream 274781 9925133 ~ 9926043 (+)
G140305 NA non-coding downstream 75123 10276877 ~ 10278511 (+)
G140331 NA non-coding downstream 105666 10307420 ~ 10307715 (+)
G140341 prkci,LOC107659412,LOC107558824 non-coding downstream 131074 10332828 ~ 10335069 (+)
G140391 NA non-coding downstream 159237 10360991 ~ 10361377 (+)
G140392 NA non-coding downstream 169698 10371452 ~ 10374169 (+)
G140262 NA other upstream 206758 9993586 ~ 9994066 (+)
G140258 NA other upstream 210528 9989918 ~ 9990296 (+)
G140103 NA other upstream 455469 9743698 ~ 9745355 (+)
G140062 NA other upstream 660014 9539775 ~ 9540810 (+)
LOC103030224 NA other upstream 976843 9220274 ~ 9223981 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other downstream 109346 10311100 ~ 10345471 (+)
G140402 NA other downstream 193766 10395520 ~ 10399976 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other downstream 225512 10427266 ~ 10444540 (+)
G140520 NA other downstream 596791 10798545 ~ 10798891 (+)
G140659 NA other downstream 1178344 11380098 ~ 11383505 (+)

Expression


Co-expression Network