LOC111194218


Basic Information

Item Value
gene id LOC111194218
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 37823208 ~ 37824650 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677682.1
AATGGAATAATTATGACTGTGATATTTTAGATGCCTGTAATTCTGCTTTTCTCCACAGTTCCTTCTAGCACTCCCCTGCCTGAAGAGCGGTTCTTGTGTTCTTTATGTAAGAATTTATTAACTGATCCAGTTTGTACTCCATGTGCACACAACTTCTGTAAAACCTGCCTTACTCAATACTGGGACAAAAATGACTGCTGTCAGTGCCCAATTTGTGACAAGACTTTTGAGAGAAGACCAGACCTTATAGTAAATGACCTTATGTCTTCAATGATTGCTGATTTAAGGAATGTAGGTACAGTTAAAATTCCTGCCAAACCCGGAGAAGTGCAATGTGATATCTGTCTTGATGTAAAGCAGAAAGCAGTGAAATCCTGCCTAGAATGTTACTCAAGATTGTGTGAGTTACACATCCAGTATCACAGTGGATTACCACAATACAGGACTCATAAACTGATTGATGTTGTTGATAACATTGACATATACATCTGCCAAAAGAATAAGAAACCCTTGGACCTGTTCTGCAGAGATGACCACATATGCGTGTGTCAATTCTGCACTGAAGGagagcacaaaacacacaaaactgtACCTATAGAAGAGGAGAGTACTGAGAGAAAGACTTATACGAGAGTGGTACGGGCTGAAATTCAGCAGTCAATTGAGGACAGAAAGAAGAAGATTCAAGAGGTCAAAAAATCTGCAGAGTTTAGTAAAAAAAGCACAGAGAAAGTAGTTACAGACACTGTTAAAATCTTCTCTGCTCTGATACACTCCATTGAGAGAAGCCATTCTGAACTGCTTATGTCAATGGAGGTGAAGCGGAAAGCAGCAGAGAGGCAGGCTGAAGATCTCATTAAGGATCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgagGATCACCTCCACCTCCTACAGATTTACCCATCCCTGTGCAGACCCCCACACACCACCAACTGGACTAACATCTCAACTTCAAAAGAGTCTGAACGATCAACTGTATGAAAATGGTAAAAGTCTgttaaatcatattttcttgTCTTCTACG
>XM_022677683.1
TTATGACTGTGATATTTTAGATGCCTGTAATTCTGCTTTTCTCCACAGTTCCTTCTAGCACTCCCCTGCCTGAAGAGCGGTTCTTGTGTTCTTTATGTAAGAATTTATTAACTGATCCAGTTTGTACTCCATGTGCACACAACTTCTGTAAAACCTGCCTTACTCAATACTGGGACAAAAATGACTGCTGTCAGTGCCCAATTTGTGACAAGACTTTTGAGAGAAGACCAGACCTTATAGTAAATGACCTTATGTCTTCAATGATTGCTGATTTAAGGAATGTAGGTACAGTTAAAATTCCTGCCAAACCCGGAGAAGTGCAATGTGATATCTGTCTTGATGTAAAGCAGAAAGCAGTGAAATCCTGCCTAGAATGTTACTCAAGATTGTGTGAGTTACACATCCAGTATCACAGTGGATTACCACAATACAGGACTCATAAACTGATTGATGTTGTTGATAACATTGACATATACATCTGCCAAAAGAATAAGAAACCCTTGGACCTGTTCTGCAGAGATGACCACATATGCGTGTGTCAATTCTGCACTGAAGGagagcacaaaacacacaaaactgtACCTATAGAAGAGGAGAGTACTGAGAGAAAGGTCAGTGACAAGTGCCATCAAGAAACAAAattcattatgaaaaaaatagttACACAGTCTGCAAATAAAATCAGTATTGCTTTAATCCTAATTTAAGAAGAATCTATCTTTTCTTTGTATGGCCTGTTCTCAGACTTATACGAGAGTGGTACGGGCTGAAATTCAGCAGTCAATTGAGGACAGAAAGAAGAAGATTCAAGAGGTCAAAAAATCTGCAGAGTTTAGTAAAAAAAGCACAGAGAAAGTAGTTACAGACACTGTTAAAATCTTCTCTGCTCTGATACACTCCATTGAGAGAAGCCATTCTGAACTGCTTATGTCAATGGAGGTGAAGCGGAAAGCAGCAGAGAGGCAGGCTGAAGATCTCATTAAGGATCTGGAGCAGGAAATCACTGAGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgagGATCACCTCCACCTCCTACAGATTTACCCATCCCTGTGCAGACCCCCACACACCACCAACTGGACTAACATCTCAACTTCAAAAGAGTCTGAACGATCAACTGTATGAAAATGGTAAAAGTCTgttaaatcatattttctt

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677682.1 False 1081 mRNA 0.41 4 37823208 37824650
XM_022677683.1 True 1194 mRNA 0.40 3 37823218 37824640

Neighbor

gene id symbol gene type direction distance location
LOC103022155 LOC103022155 coding downstream 1275 37816286 ~ 37821933 (-)
LOC103022872 NA coding downstream 14913 37800904 ~ 37808295 (-)
LOC103023489 LOC103023489 coding downstream 27931 37789105 ~ 37795277 (-)
LOC103023814 LOC108440030 coding downstream 35388 37770817 ~ 37787820 (-)
LOC103024124 acin1,LOC108440069,LOC108267949 coding downstream 56248 37742557 ~ 37766960 (-)
LOC107197638 NA coding upstream 4668 37829318 ~ 37834005 (-)
LOC103047381 NA coding upstream 63033 37887683 ~ 37898901 (-)
LOC103046269 NA coding upstream 120189 37944839 ~ 37969078 (-)
syt4 syt4,LOC107562593,LOC107691948,LOC107742284 coding upstream 162797 37987447 ~ 37996482 (-)
LOC103045353 rab39b,rab39bb,LOC103045353,LOC107753937,LOC107668897,LOC107588139,LOC103034714,LOC108428007 coding upstream 190932 38015582 ~ 38027404 (-)
G147359 NA non-coding downstream 10863 37811598 ~ 37812345 (-)
G147311 NA non-coding downstream 215323 37596154 ~ 37607885 (-)
G147320 NA non-coding downstream 220286 37584618 ~ 37602922 (-)
G147321 NA non-coding downstream 221811 37584263 ~ 37601397 (-)
G147314 NA non-coding downstream 258006 37562807 ~ 37565202 (-)
G147386 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288 non-coding upstream 178829 38003479 ~ 38009023 (-)
G147390 NA non-coding upstream 197405 38022055 ~ 38022505 (-)
G147397 NA non-coding upstream 216802 38041452 ~ 38041671 (-)
G147407 NA non-coding upstream 268862 38093512 ~ 38122985 (-)
G147405 NA non-coding upstream 301004 38125654 ~ 38213359 (-)
mrpl52 mrpl52 other downstream 96399 37723384 ~ 37726809 (-)
G147302 slc7a8a,LOC107742270,LOC107668787,LOC107588204,LOC107562402,LOC107691931,LOC107753926,LOC108440039 other downstream 308756 37508661 ~ 37514452 (-)
G147092 NA other downstream 431473 37352078 ~ 37391735 (-)
poln poln,haus3 other downstream 577183 37084996 ~ 37246025 (-)
LOC103043480 LOC108442826,LOC108267520,LOC107738028,LOC107683536 other downstream 1116927 36666199 ~ 36706281 (-)
LOC111194363 LOC108267931 other upstream 16232 37840882 ~ 37858571 (-)
LOC103047699 NA other upstream 80242 37904892 ~ 37910873 (-)
LOC103040134 NA other upstream 1182336 39006986 ~ 39012417 (-)
LOC103039602 rbm4.3,LOC106577685,LOC101471146 other upstream 1189352 39014002 ~ 39017632 (-)
LOC103028345 LOC103028345 other upstream 1205348 39029998 ~ 39250697 (-)

Expression


Co-expression Network