LOC103031935 (ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460)


Basic Information

Item Value
gene id LOC103031935
gene name ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3901154 ~ 3942480 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677694.1
ATGATCATTCTCGTCAACCAAGTGGACACCATCGCTCCTGATGAAAGTTTCTCCCTGCTGGAGTCGGGGATCGTCAACACCAAAGTTCGGAGCTTCGGCCCACTCTCCAAAGCCGGCTTTTATCTGGCCTTCCAGGACCTGGGCGCCTGCATGTCCCTCATATCTGCGAGGGTCTTTTTCAAAAAGTGCTCCACCACCATCGCCAGCTTTGCCGTTTTCCCCGAGACGGCAACAGGTGCGGAGGCCACGTCGCTGGTGATCGCGGCGGGGGCCTGCGTCCCCGACGCGGTGGAGGTGTCCGTCCCCCTCAAGCTCTATTGCAACGGAGACGGCGAGTGGATGGTTCCCGTGGGATCCTGCACCTGCATGCCGGGCTTCGAGCCGGCCAAGAAAGACACCCAATGTCAGGCCTGCACTCCAGGATCCTTCAAGTCCAAGCAGGGTGAGGGCTACTGCATGCCCTGTCCCCCTCACAGCCGTGCCACCTCCAGGGCGGCCAACGTGTGCCCGTGCCAGAGCGGGTACTACCGGGCCGACAGCGACTCCCCAGACTCCGCCTGCACCACCGTTCCTACAGCTCCATTAAACGTGATCTCCAGCGTGAACGAAACCTCCGTGTCACTGGAGTGGGCGGAGCCGCGGGACTCTGGTGGGCGGGCCGACGTGGTGTATAACGTGGTGTGTAAGAAGTGCCAGCACGGTGGAGGTTTCTGCGTGCGCTGCGACGACAACGTGGACGTGTCCCCGCGGCAGCTGGGCCTGGCTGACAGGCAGGCGGCCGTCAGGAACCTGCAGGCGCACACACGCTACAGCTTCGAGATCCAGGCCATCAACGGGGTCTCCGCCAAGAGCCCCTCCATCCCCCACTACGCCACTGTAAACATCACCACCAATCAAGCAGCCCCTTCTGCCGTCCCCACGGTGCACTTGATGAGGGCCACAGCCAGCACCCTGAGCCTGTCCTGGCTGCCCCCCGAGCGGCCCAACGGGGTGATCCTGGATTATGAGATCAAGTACCAGGAGCGGgGAGAATCCTTCTCCCACACAGTCACAGCACAGTCCAGCTCAGCCAGGGTGGAGGGTTTAAAATCGGGCAAAGTGTACACGGTCCAGGTCCGAGCTCGCACGGTGGCCGGCTACGGCACGTACAGTAACCCAGTGGACTTCAGCACCAGCCTGCATGACGTTCCAGAGCGATCAGTGCAGGACCAGCTGCCCCTCATCATCGGCTCAGCCCTGGCTGGATTCGTTGTCATCATTGCAATGGTGGTCATAGCTGTGGTCTGCCTCAGGAGGCAGCGCACAGGTTCTGAGCTGGAGTACACCGAGAAACTGCAGCAATACGTGGCTCCAGGCGTGAAGGTATACATCGACCCCTTCACATACGAAGACCCCAACGAGGCCGTGCACGAGTTCGCCCGCGAGATCGACATTTCCTGCGTGAAGATCGAGGAAGTCATCGGAGCAGGAGAGTTCGGAGAGGTGTGCCGGGGTCGGCTGAAGCAGCCCGGCAGGAAGGAGGCAACCGTGGCCATCAAGACGCTGAAAGCCGGCTACACGGAGCGGCAGAGGCGGGACTTCCTGGCTGAGGCAAGCATCATGGGCCAGTTCGACCACCCCAACGTCATTCACCTGGAAGGTGTTCTGACCAGGAGCTGCCCGGTGCTGATCGTCACCGAGTTCATGGAGAACGGTGCTTTGGATTCATTCCTTAGGCTGAATGACGGCAGGTTCACGGTGACCCAGCTCGTCGGCATGCTGAGGGGCGTCGCCGCCGGCATGAAGTACCTCTCGGATATGAACTACGTCCACCGCGACCTGGCGGCGCGCAACGTACTGGTCAACAGCAACTTGGTGTGCAAGGTGTCCGACTTCGGCCTGTCTCGATTCCTAGACGACAACTCGTCCGACCCCACCTACACAAGCTCTCTGGGTGGAAAAATCCCAATCCGCTGGACTGCCCCCGAAGCTATCGCCTTCCGTAAGTTCACCTCAGCCAGCGATGTGTGGAGCTACGGCATCGTTATGTGGGAGGTGATGTCGTTCGGAGAGCGGCCCTACTGGGATATGAGCAACCAAGATGTAATGAACGCAGTGGAGCAGGACTACAGGCTGCCGCCGCCCATGGACTGCCCAGCTGTGCTCCACCAGCTGATGCTGGAGTGCTGGGTGAAGGAGCGTAACGCACGGCCGCGCTTCGCCCAGATCGTCAGCACGCTGGACAAACTCCTGCGCAACGCCGCCAGCCTCAAAGTGCTGACCTCTGCACACTCAGGGGATCTTTACCGTGTTGGCGGGACTCTACCTGGACACCAGAGGAAGAGCCTTGGTGGTGTTCAGGACATGCGGCAGATGAGCCAAACCCTCCCCATCCGTGTCTGACCATCTGACCAAGCAAGAGGACCacctgctaatgctaatgctaatgcttaccAAACTGGCTAGTATCTGGAGAGTCTGAAGAGCAGCAACACCACAGGacactactttttttttgggattattattattattattatcagtgtCCAGCTCTGTCTGAAGATGCTCCAGAGTTACGCCAGTGGACCAAACTTTGAACACTTTCAATCGATGGAAAACATTGTATAAAACGCTACTGGAAGAAAAAGCGGATTTCTTTGTGGCAGTGCCTCAGGCGGGCTTTTTGTTCCCCGTCCTCCTTCCCGTCACGGCTTTCGTGTTTACACTGGACACTGTTCTTTATGCAGACCCcccctgccccccccccccaatccaTGACGATTATGTTTCTACGACTCAGGTTTAGTttgcatgtgtgcatgtgtttccACAGCGACGGTAAAAGAAAAGCCGGAGTCTATTCTCTCTGAGAGGTCCTCTCTGGTCCAATAAACCGCTAAAGCTAATACATGGCTTTTTtgacaagaacaagaacaagcaGGTTGAACAAGCAGATTTGCATTCTCAATTTTACTCAGTATCTCAATATTGTTTGAGGCTACCCACTACCTTTTGTTGATTATTAGCCATAGCATTCCTGGATGTTCTGTAAATGGATGTATTGCCGGCCTCGCCGGGCGAAGACGCAGAGCGAGCGAAGAATTCTAAGCTAACTGTGTAATACTCTAAAGCAAAGAGACGTGAATTAATGTTAGCCTGAAATAGAAATGAAAGGGTTAGCTTGAGGACATTTTCGACAATGCCTTTTGtgcttttcttttcattttttatttttttttttgttcctctgAGACTTGACTCTTCTGATCTTTTCTTCATATTGAAGAAAGGAATagcagagaagagaggagaagcacggaaaggatgttttttttttccaaagtgaAGTGGAAAAGAAGTATAAAAGAAGTGGAAAAGCGAACACTTATAGAAGCTCAATTCATCTCCATCCTCTTTTTGCAGAAGAAGATACCAAGGAACCACGGGGACCGTCTTACCAATTCGATTACCAGAGTCGATAACCACATGAACACCAGAACATAGACGTTTTGTTTACCTCTGTCGTATTTCGTCTTCCATGTTACAGTATTAATGAAATCTCCTCATGGACAACGTTTGACTGTGATGTTCGGAATTCTTAACTCTTATAACTGTGACCGAGGAAGACTTTATAGAgctggtgggtgggtgggtgtacgtgtgtatgtgtgtgtgtgtgtgtgtcggggaGGTGCACAGCGTATGTCCGAGTGAGACGCAGCTTCATATGCATGCTAGATTCAGAGCTATGTGATCGACCACGTCCGTGAAGAGAGACAGTGCTACGACTGTTGAAGGCTGTTGTTTAATGAATATCCCTATTATTTCCACAGTAATTCACTCTGTTACAAATATGCAttattgtgtaaataaatacagatcaTGAGACACCAA

Function

symbol description
ephb3a Predicted to enable transmembrane-ephrin receptor activity. Predicted to be involved in several processes, including ephrin receptor signaling pathway; neuron projection development; and substrate adhesion-dependent cell spreading. Predicted to act upstream of or within nervous system development and protein phosphorylation. Predicted to be located in dendrite and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior neural keel; central nervous system; hypoblast; immature eye; and mesoderm. Orthologous to human EPHB3 (EPH receptor B3).

NR:

description
PREDICTED: ephrin type-B receptor 3-like

GO:

id name namespace
GO:0051965 positive regulation of synapse assembly biological_process
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0016477 cell migration biological_process
GO:0060997 dendritic spine morphogenesis biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0050770 regulation of axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007413 axonal fasciculation biological_process
GO:0046777 protein autophosphorylation biological_process
GO:0030425 dendrite cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677694.1 True 3873 mRNA 0.54 14 3901154 3942480

Neighbor

gene id symbol gene type direction distance location
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 302552 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 320028 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 332476 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 348599 3536417 ~ 3552555 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 423593 3417426 ~ 3477561 (+)
LOC103021527 NA coding downstream 53462 3995942 ~ 4002916 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 79956 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 110250 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 133008 4075488 ~ 4080104 (+)
ccdc39 NA coding downstream 138532 4081012 ~ 4095442 (+)
G138671 NA non-coding upstream 147744 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 167694 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 219224 3681726 ~ 3681930 (+)
G138663 NA non-coding upstream 231578 3669362 ~ 3669576 (+)
G138661 NA non-coding upstream 237146 3663776 ~ 3664008 (+)
G138744 NA non-coding downstream 93891 4036371 ~ 4039858 (+)
G138747 NA non-coding downstream 126307 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 162500 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 230291 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 294189 4236669 ~ 4237527 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 61782 3801853 ~ 3839372 (+)
G138701 NA other upstream 66694 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 781666 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 816289 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 965025 2900475 ~ 2936129 (+)
LOC111194271 NA other downstream 153517 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 223463 4165943 ~ 4172010 (+)
G138839 NA other downstream 295129 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 730900 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 760866 4703346 ~ 4708663 (+)

Expression


Co-expression Network