LOC111194231


Basic Information

Item Value
gene id LOC111194231
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7698361 ~ 7706542 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677702.1
GCCGTGCTCTTCTATAAATAAGAGCCGGGTTTGGACAAAAGTGAAAGTAAGGAAGCAGCAGCTGCTGAAGTTTCTGAGAAGTGTGTTTCGCTGGTAATCAGGaaAACCACGCTTTTAAAAGGGTCCCTGGAGGATCACCAAAGATCACCATAGAGTCCCCTATTGTGaggaCAGTTGAGAAGAAGATTTTGAGAAGATGGCTCAGCACTACCCTGGACGTAAGCATTACACTATGTACCATGGCACGACAATGGAAATCGCGAGGAAAATCAAACGTAATGGTTTCGTCCCATCTTCTGATGGCATGCTGGGACGTGGTGTGTATTTGAGCCGAAGCTTTGATAAAGCCGCTCGATATCCACTAAACGATCGATCGCAGCCGCGCGCAGTCCTCAAACTGAAAGTACGAGTGGGCAGAGTGAAGAGGATCGACTGTCAGGATCACTACATGCAGAAGACCTGGCACGATCACGGATACGACACGGCCTGGGTGCCTCCGAACTGCGGGATGGTGCCCAGTGGACTGGAGGAGGACTGTGTGTACGATCCGTGGAGAATCACAGTACTGGAAATTATCCCCAATAATCAACTTTATTTTCTAGAGGACATTTCAGAAGAAGATTGTGGGACGATGGCAGAGCACTACCCTGGACATAGGTATCTTACTATGTACCATGGCACGACAATGGAAAACGCTAAGAAAATCGAGCTTGAAGGCTTTGAACCCTCCCCCAAGGGCATGCTGGGACGTGGCGTCTATTTGAGTAGGAGCTTCAAGAAAGCTGCTGCATATCCAAAAAACAATCGATCACAGCCACTCGCCATCCTTAAACTCAGAGTACGAGTGGGCAGAGTGAAGAGGATCGACTATCAAGGCCACTACATGCAGAAGACCTGGCACGATCACGGATACGACACGGCCTGGGTGCCTCCGAACTGCGGGATGGTGCCCAGTGGACTGGAGGAGGACTGTGTGTACGATCCGTGGAGAATCACAGTACTGGAAATTATCCCCAATAATCAACCATGAGATGGGTTTACCAATAATATGGATTTTTCTGAATGAATAGGATCAGGGGTGATTCTAGAATCTGagaaaattttatattttatttgtaaatcaagggatcagagtctggaggaagagtggagagacacacagtccaaac

Function

GO:

id name namespace
GO:0004982 N-formyl peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677702.1 True 1169 mRNA 0.48 4 7698361 7706542

Neighbor

gene id symbol gene type direction distance location
LOC107197863 NA coding upstream 4585 7688107 ~ 7693776 (+)
LOC103025951 cdh24,LOC108442582,LOC107591395 coding upstream 43828 7335004 ~ 7654533 (+)
LOC103025648 NA coding upstream 448228 7230536 ~ 7250133 (+)
psmb5 psmb5,LOC108438927,LOC107668975,LOC107558100,LOC107706341,LOC107694665 coding upstream 513958 7164784 ~ 7184403 (+)
LOC103025339 psmb11,LOC102219341 coding upstream 536099 7160020 ~ 7162262 (+)
LOC103026260 NA coding downstream 2774 7709316 ~ 7717249 (+)
LOC103026570 NA coding downstream 15198 7721740 ~ 7729314 (+)
carmil3 carmil3,lrrc16b coding downstream 35181 7741723 ~ 7911771 (+)
LOC103023286 rem2,LOC108442842,LOC107706340,LOC107694663,LOC107567555,LOC107583115 coding downstream 242380 7948922 ~ 8014625 (+)
clstn2 clstn2,LOC107738117,LOC107668970,LOC107706338,LOC107694660 coding downstream 425744 8132286 ~ 8509323 (+)
G139750 NA non-coding upstream 129791 7568367 ~ 7568570 (+)
G139747 NA non-coding upstream 158418 7539659 ~ 7539943 (+)
G139738 NA non-coding upstream 191004 7507052 ~ 7507357 (+)
G139737 NA non-coding upstream 222015 7475970 ~ 7476346 (+)
G139712 NA non-coding upstream 495105 7202932 ~ 7203256 (+)
G139781 NA non-coding downstream 313904 8020446 ~ 8020933 (+)
G139782 NA non-coding downstream 315841 8022383 ~ 8035973 (+)
G139778 copb2,LOC107706339,LOC107583113,LOC107738120,LOC107567551,LOC107694662 non-coding downstream 332353 8038895 ~ 8042442 (+)
G139787 LOC108442840 non-coding downstream 355188 8061730 ~ 8065226 (+)
G139792 NA non-coding downstream 390756 8097298 ~ 8097743 (+)
LOC103044361 nedd8,LOC103358415,LOC107588156,LOC107562413,LOC104953875,LOC108438931,LOC106608856,LOC106577802 other upstream 652063 7041560 ~ 7046298 (+)
dhx9 dhx9 other upstream 956292 6718238 ~ 6742069 (+)
G139282 NA other upstream 1430974 6266816 ~ 6267387 (+)
LOC103028159 NA other upstream 1455790 6235434 ~ 6242571 (+)
G139268 NA other upstream 1534197 6159720 ~ 6164164 (+)
LOC103030954 NA other downstream 1454791 9161333 ~ 9162523 (+)
LOC103030224 NA other downstream 1513732 9220274 ~ 9223981 (+)
G140062 NA other downstream 1833233 9539775 ~ 9540810 (+)
G140103 NA other downstream 2037156 9743698 ~ 9745355 (+)
G140258 NA other downstream 2283376 9989918 ~ 9990296 (+)

Expression


Co-expression Network