LOC103038536


Basic Information

Item Value
gene id LOC103038536
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11319770 ~ 11330660 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677705.1
ATGCGGCCTCTGGTCTCTGAAACATCCCTGCTCTTTACTGTCCTCATTAGCACAGTGTTCAGTGCTGAGAAGCTGGAACAGAAGCTCATGATAACTAAGCCTGCATCTAAGCTTGCTATATTAGAATGCAAGTTCTCGGCAAACTGTGGCAACTATATCCACTGGTATCAGAAGAAGGGGGATGAAATCAGGAGGGTGCAGCACGTGGATGTCAACAATGGAAATCCTATAAATGAGCGTGGATTTGAGTACCTGAAATCCTCAAGGAAAGGTATCCAAAGTTTTGCTTTGAACATCCCTGAATTAAAGCCAGAGCATTCTGCCACTTACTACTGCGCCTGCTGGAAGCTGCCAGCCATCAGTTCAGCACTTTTTGAACTTGATTATCACACTGTGGTTAATGAGAAAGTCTTTGGATCAGGCACAAGACTTTTTGTAACAGGTGAAAAAACGGAGCCTCCTAAACTGTCGGCGTTCCCAGTGTCTCGATCCGGAGATGGGAGGAGTGTGCTGCTGTGTCAGGCCAGAGGCATGTATCCAGACCTGGTGAAGTTCATGTGGAAGGATCAAGCTGGGAATGAGGTGAAGCTGTCAGACAcagaggagctgctggagcagagAGACGAGGGTCAGGAGGTCAGAGTGACCAGCATGCTCATCATAGACCAACAGAAAGCACGATCTAACACCTTCACCTGCTCCGTCCAACACGACAGAAGTGCTAATAATGACCTGAAGAGTGTGGTGATCCCTGCAGGAAACTCAGAGGACGAGACAAAACCTGAGATTAACCCAAATCCTGTCCCAATCCCAACCTGTCCCCCtccaaaagaagaagaagaagaaaaagaagaagaaaaagaagtagAAAACTATGGTATAAGTAAGTAGAATAATATAACTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677705.1 True 906 mRNA 0.46 5 11319770 11330660

Neighbor

gene id symbol gene type direction distance location
LOC111194305 NA coding upstream 5396 11313533 ~ 11314374 (+)
LOC103038209 amph coding upstream 11540 11205550 ~ 11308230 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding upstream 569095 10683588 ~ 10750675 (+)
LOC103042199 LOC108437251,LOC108267580 coding upstream 639681 10558457 ~ 10680089 (+)
LOC103039831 ubtfl,LOC108267581 coding upstream 767169 10530991 ~ 10552601 (+)
LOC103039058 NA coding downstream 7301 11337961 ~ 11338482 (+)
LOC103039371 NA coding downstream 13931 11344591 ~ 11371098 (+)
LOC103029197 NA coding downstream 47462 11378122 ~ 11378859 (+)
LOC103029510 NA coding downstream 49322 11379982 ~ 11381020 (+)
LOC107196916 NA coding downstream 51049 11381709 ~ 11382709 (+)
G140563 NA non-coding upstream 190861 11127288 ~ 11128909 (+)
G140556 NA non-coding upstream 315244 11003817 ~ 11004526 (+)
G140550 NA non-coding upstream 340680 10978574 ~ 10979090 (+)
G140543 NA non-coding upstream 370285 10949255 ~ 10949485 (+)
G140516 NA non-coding upstream 561300 10758255 ~ 10758470 (+)
G140670 NA non-coding downstream 113181 11443841 ~ 11444206 (+)
G140644 NA non-coding downstream 121359 11452019 ~ 11455807 (+)
G140671 NA non-coding downstream 123910 11454570 ~ 11454829 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding downstream 170396 11501056 ~ 11520012 (+)
G140637 NA non-coding downstream 176004 11506664 ~ 11513421 (+)
G140520 NA other upstream 520879 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 875230 10427266 ~ 10444540 (+)
G140402 NA other upstream 919794 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 974299 10311100 ~ 10345471 (+)
G140262 NA other upstream 1325704 9993586 ~ 9994066 (+)
G140659 NA other downstream 49438 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 124825 11455485 ~ 11478740 (+)
G140931 NA other downstream 907328 12237988 ~ 12240625 (+)
G140930 NA other downstream 1048336 12378996 ~ 12381554 (+)
G141086 NA other downstream 1410813 12741473 ~ 12743453 (+)

Expression


Co-expression Network