LOC103039371


Basic Information

Item Value
gene id LOC103039371
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 11344591 ~ 11371098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677706.1
TGTTCATGAAACCCTCAGTGTTGTGAACAGTTGAGGTGCATAGTATAGGGAAGAAAATGAAGCTGCTTATCATCATACATGTATTTATCTTTTCTCTGAGTGTGGAAACTGTGCTGGGACTGACATTGGAGCAACCTGAACTCTCCTGGACCAAGCCAGAAGGCAAAACTCTTTACATCGACTGCAAGGTCACTGATCTGGGAAGTGGCAATAATGTTCACTGGTACCAGCAGAAAGACGGTGAAGCTCTCAGAAGGATCCTGTACATCAATAATGGTGGCACTACCAAGACGCTCGATCCCAACCATCCAGAAAAAGACGATTTCACCATGTCAGAAGGCACCTATAAACTAAAGGTGAAAGCAGTGAAGAAGATCCACGCAGCAGTGTATTACTGCGCCTGCTGGGACGGCCACAGTGACAACAATTACTCACATCCTGTACAAGAACTCTGTCTGTTTGTTATCTTATCTAAAGAGCATTCTCTGGGGGAGAGGTCAGGAGGCCTGGGGCCAAACAAAGTTCTAGGAGTGGGAACAGGGGAGTGCGGCGTTTCAGCCATGGGAATCACGAAGAGTGGCGTCTCAGCCGCGGACATCAAAAACATGAGCACAGGTGGGAAACAGGGCAGGGACAGGTTGGTTAAGAGAATATTGGGGagtaaacagcatcatgaagtccAAAGAACTTACATCCTGAACAAGGAGAGCACAGATCAGAGAcacagccaagaggcccatggtgacTCTGGACGAaatgcagagatctacagctcaGTGAAAGTCTTTGGATCAGGTACAAGACTTTATGTGACAGACAAGAAAATCAAACCCCCTGAACTGGCTGCGTTCCCAATATCCCCCAGTGAAGGGAATGGGAAGCGAGCGCTGCTGTGTCAGGCCAGAGGCATGTATCCAGACCTGGTGAAGTTCATGTGGAAGGATCAAGCTGGGAATGAGGTGAAGCTGTCAGACAcagaggagctgctggagcagagAGACGAGGGTCAGGAGGTCAGAGTGACCAGCATGCTCATCATAGACCAACAGAAAGCACGATCTAACACCTTCACCTGCTCCGTCCAACATGAGGATAAAGTCGACAACATCAAAATCCCAGCAGATAAAGCTGTGGATGCCTCTGACTATGGTCCTGTTCCATCCTGCCCACCCccaaaacaagaagaagaagagaaatatgGTTCGTTTGAGCTCATCCGTCAGCTGAACCTGTTCAATCTGACCTACGTATCTCTGCTTGTGAAGAACGTGTTGTATTTTGGTGGTTTGTGTTTCTTACTGTACAAGAGGAGAGACAGAACCATTACAGGCAGTCCAACACCAAACCAGGGAAAATGAAGGGGTGctattttaaacatgtatttctttgttttcttcctttttggTTTGTTAAGATTTTGTTTCAGCAGTAAAGCAGTTGATTCTTTAAATGTGTAATGATGTGTTACACAATGTTAAAAtatacctgtaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677706.1 True 1497 mRNA 0.46 8 11344591 11371098

Neighbor

gene id symbol gene type direction distance location
LOC103039058 NA coding upstream 6109 11337961 ~ 11338482 (+)
LOC103038536 NA coding upstream 13931 11319770 ~ 11330660 (+)
LOC111194305 NA coding upstream 30217 11313533 ~ 11314374 (+)
LOC103038209 amph coding upstream 36361 11205550 ~ 11308230 (+)
LOC103039003 fam49b,LOC108437217,LOC108267758,LOC107713994,LOC106592588,LOC107657432,LOC107718035,LOC107556887,LOC107701021 coding upstream 593916 10683588 ~ 10750675 (+)
LOC103029197 NA coding downstream 7024 11378122 ~ 11378859 (+)
LOC103029510 NA coding downstream 8884 11379982 ~ 11381020 (+)
LOC107196916 NA coding downstream 10611 11381709 ~ 11382709 (+)
LOC103023731 NA coding downstream 11695 11382793 ~ 11383625 (+)
LOC111194233 NA coding downstream 24007 11395105 ~ 11395623 (+)
G140563 NA non-coding upstream 215682 11127288 ~ 11128909 (+)
G140556 NA non-coding upstream 340065 11003817 ~ 11004526 (+)
G140550 NA non-coding upstream 365501 10978574 ~ 10979090 (+)
G140543 NA non-coding upstream 395106 10949255 ~ 10949485 (+)
G140516 NA non-coding upstream 586121 10758255 ~ 10758470 (+)
G140670 NA non-coding downstream 72743 11443841 ~ 11444206 (+)
G140644 NA non-coding downstream 80921 11452019 ~ 11455807 (+)
G140671 NA non-coding downstream 83472 11454570 ~ 11454829 (+)
G140676 epdr1,LOC108437243,LOC107664036,LOC107558964,LOC107713986,LOC108267170 non-coding downstream 129958 11501056 ~ 11520012 (+)
G140637 NA non-coding downstream 135566 11506664 ~ 11513421 (+)
G140520 NA other upstream 545700 10798545 ~ 10798891 (+)
sppl2b sppl2b,sppl2,LOC107738168,LOC107591351,LOC107668984 other upstream 900051 10427266 ~ 10444540 (+)
G140402 NA other upstream 944615 10395520 ~ 10399976 (+)
G140336 prkci,LOC107659412,LOC107706387,LOC102783124 other upstream 999120 10311100 ~ 10345471 (+)
G140262 NA other upstream 1350525 9993586 ~ 9994066 (+)
G140659 NA other downstream 9000 11380098 ~ 11383505 (+)
LOC111194237 NA other downstream 84387 11455485 ~ 11478740 (+)
G140931 NA other downstream 866890 12237988 ~ 12240625 (+)
G140930 NA other downstream 1007898 12378996 ~ 12381554 (+)
G141086 NA other downstream 1370375 12741473 ~ 12743453 (+)

Expression


Co-expression Network