LOC111194240


Basic Information

Item Value
gene id LOC111194240
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14511793 ~ 14512939 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677714.1
aatactgtatattacattaatGCATCATGTCCTCTGTTTCTTTCCTTACTGTAGTGCTGACTGTACTTCACTGTGGACAAACTCAAGAAAACTCCAAACCAACACTGATGGTGAATCCTCACACCACTGTCTACACTGGAGACACACTTACTCTGACCTGTGATCTGCAGAGCTCACACACTGGATGGAAGTTTATGTGGTTCAGAGTCTCTCAGCAGTTAGATCATCTGACTTCTGAATATAAAAACACCAACACACTCAGTATAACAGCGTCTGATACAGCAGAGTATCAGTGTTCAGCACTCAGAGGAGAAAACAGCTACACAGACTACAGTGATCCAGTCAAGATTACAGTAAGAAAGAGACCAAAGGCTACAGTGAAAGTGCAGCCAGCTGAGCGAGTGTTCATCAGAGAGAGAGTCACTCTCACATGTGATATAGAAAGTGGAGAAGACTGGAGATACGAGTGGTTTAAGAATAATAATCCTCTCAGTGAAGCTCAGTGGAGGAAGAAATATGAAATCTCTAATGTTGATGGGTCTGATGAAGGTGATTATAGCTGTAAGGGAAGACGGTTAACAGAGCCGAGCTACTCAGAGATCAGTGCTGCTGTTAGACTGACTGTATCAGTTAAAAGTGTAGAGGAGCATTACTGCTGCAGAAACATCATCCTGTACATGAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677714.1 True 686 mRNA 0.42 4 14511793 14512939

Neighbor

gene id symbol gene type direction distance location
LOC103041924 NA coding upstream 11603 14488431 ~ 14500190 (+)
LOC111194238 NA coding upstream 23372 14477554 ~ 14488421 (+)
LOC103039460 LOC108268156 coding upstream 39273 14461990 ~ 14472520 (+)
LOC103039154 LOC103039154,LOC108440646,LOC108268154 coding upstream 53506 14452340 ~ 14458287 (+)
scrib scrib coding upstream 103393 14272829 ~ 14408400 (+)
LOC111194241 NA coding downstream 2531 14515470 ~ 14517074 (+)
trmt10b trmt10b coding downstream 35169 14548108 ~ 14551573 (+)
intu intu coding downstream 57430 14570369 ~ 14598691 (+)
aadat aadat,LOC102781018 coding downstream 87587 14600526 ~ 14617363 (+)
mfap3l mfap3l,LOC107553514,LOC107735698,LOC107696726 coding downstream 109218 14622157 ~ 14628563 (+)
G141501 NA non-coding upstream 25176 14485020 ~ 14486617 (+)
LOC111194202 NA non-coding upstream 69461 14440905 ~ 14442332 (+)
G141467 NA non-coding upstream 275141 14222563 ~ 14236652 (+)
G141459 fam173b,LOC108440663,LOC106941709,LOC107578923 non-coding upstream 297529 14210460 ~ 14214264 (+)
G141415 march6,LOC107686038,LOC107746911,LOC105900596 non-coding upstream 302977 14202989 ~ 14208816 (+)
LOC111194203 NA non-coding downstream 4407 14517346 ~ 14518444 (+)
G141514 NA non-coding downstream 32858 14545797 ~ 14547039 (+)
G141516 NA non-coding downstream 39694 14552633 ~ 14553089 (+)
G141525 NA non-coding downstream 52445 14565384 ~ 14567961 (+)
G141548 NA non-coding downstream 129541 14642480 ~ 14642690 (+)
G141410 NA other upstream 310795 14180665 ~ 14200998 (+)
G141361 tcea1 other upstream 653188 13855603 ~ 13858605 (+)
LOC103029537 adcyap1b,LOC103029537,LOC108437223,LOC107713980 other upstream 1651466 12842798 ~ 12860327 (+)
G141086 NA other upstream 1768340 12741473 ~ 12743453 (+)
G140930 NA other upstream 2130239 12378996 ~ 12381554 (+)
G141495 NA other downstream 15201 14528140 ~ 14530296 (+)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107696735 other downstream 266242 14779181 ~ 14784812 (+)
G141740 LOC108440267 other downstream 541718 15054657 ~ 15056973 (+)
G141791 NA other downstream 715771 15228710 ~ 15285457 (+)
G141754 pnp5a,LOC108440276,LOC103368940,LOC107747996,LOC107692836,LOC107728028,LOC108267282,LOC107570765,LOC107703870 other downstream 872677 15385616 ~ 15401904 (+)

Expression


Co-expression Network