LOC111188235


Basic Information

Item Value
gene id LOC111188235
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 18930879 ~ 18932145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677719.1
atggAAACTCCACTGATTCTGGTTGAAGAGAAAAAGACGTGGTGGAACGCTCTGAAATACTGCAGGGACAATCGGATGGACCTGGTCTCTGTTCACAATGAAACAGTTCAGCGCTTGGTGGAGAATGTTACTAGAACTGTCTCCACTCCCTTTGTGTGGTTGGGCCTGCGTCACACCTGTGCTCAGGACTTCTGGTTCTGGGTCATTGGATCTACCGTCTGCTACCAGAACTGGGCCCCGGGGAACGGTACGAGGGTGGAGGACTGCAGCGCGGGTGAGAGGTCAGGAGCGGTGCAGCCCGGGAGTAAGCAGTGGGTCAGTCTGCCAGAGACTCATGAGCTCTACTTCATCTGTACCCCCTTTACCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677719.1 True 369 mRNA 0.54 2 18930879 18932145

Neighbor

gene id symbol gene type direction distance location
exosc4 exosc4,exos4 coding upstream 104736 18821418 ~ 18826143 (+)
LOC103034112 LOC103034112,LOC108411205,LOC108267323,LOC106599750,LOC105019307,LOC103396312,LOC101066292 coding upstream 114482 18794903 ~ 18816397 (+)
LOC103034870 NA coding upstream 145521 18753807 ~ 18785358 (+)
LOC111194332 NA coding upstream 1626788 17235199 ~ 17304091 (+)
rpe65 rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 1926075 16994339 ~ 17004804 (+)
LOC103047721 NA coding downstream 37741 18969886 ~ 18987441 (+)
LOC103046799 mylk4,LOC107671735,LOC107562868 coding downstream 162621 19094766 ~ 19119530 (+)
LOC111194335 NA coding downstream 493849 19425994 ~ 19431174 (+)
ripk1 NA coding downstream 1156151 20088296 ~ 20115213 (+)
mep1b LOC108439312 coding downstream 1291631 20223776 ~ 20245141 (+)
LOC103030232 NA non-coding upstream 391 18923993 ~ 18930488 (+)
G142385 NA non-coding upstream 35872 18866307 ~ 18895007 (+)
G142382 NA non-coding upstream 59980 18864191 ~ 18870899 (+)
G142380 NA non-coding upstream 70138 18860351 ~ 18860741 (+)
G142377 NA non-coding upstream 76859 18853400 ~ 18854020 (+)
G142397 NA non-coding downstream 19069 18951214 ~ 18957062 (+)
G142401 NA non-coding downstream 59044 18991189 ~ 18994237 (+)
G142416 NA non-coding downstream 188107 19120252 ~ 19121602 (+)
G142432 NA non-coding downstream 238382 19170527 ~ 19170796 (+)
G142434 NA non-coding downstream 281221 19213366 ~ 19219047 (+)
G142378 gpaa1 other upstream 37370 18856236 ~ 18893509 (+)
G142384 gpaa1,LOC102780288 other upstream 60562 18865450 ~ 18870317 (+)
G142166 LOC108436878 other upstream 1726386 17203222 ~ 17204493 (+)
G142093 abcf3 other upstream 1857395 17058294 ~ 17073484 (+)
G142067 LOC108436873,LOC108267642,LOC105898987 other upstream 1945584 16972202 ~ 16985295 (+)
G142620 NA other downstream 804161 19736306 ~ 19868292 (+)
rnf138 NA other downstream 1270503 20202648 ~ 20220149 (+)
G142820 NA other downstream 1850438 20782583 ~ 20790122 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 2636937 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 2666537 21598682 ~ 21611682 (+)

Expression


Co-expression Network