LOC111194246 (LOC108436149,LOC108267579)


Basic Information

Item Value
gene id LOC111194246
gene name LOC108436149,LOC108267579
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21339580 ~ 21349632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677723.1
ATGCTGGTGAAACTGGtgtggcattatgggaaaaGCTCTTTAAAGCGCGGAGAGCTTGAACGCGTAGTTCATTTCCTCTCAGGACTGAAAGAGAGACTGAACAGAATGAGCGGCTCCAGccttctgtgtttctgtgttttactCCAGTGTGTGTCCTCCGCTGTGATCCCAACAGGAGTCAGGAGAAACGACAGTCCGATTATAGGTGTTCTCGCTCAGGAGGTGAAGACACCAACACCTGGCAAAAATGCTTACATCGCTGCCTCCTATGTTAAATATCTCGAGTCTGCAGGAGCGAGAGTTGTTCCAGTCatGATCAATAAGTCTGAGGAGGAGTATACCCAGCTGTTTAAATCCATAAGTGGAATTCTTTTTCCAGGAGGTAGTGCCAGTATTGAATCCTCTGGCTATGCCAAAGCAGCAGGTATATTCTACAGACTCGCTCTGGAGgCAAACTCTAAAGGTGATTATTTTCCAGTATGGGGAACGTGCCTGGGCTTTGAAAAGCTAATGCTATTGACTAGTGAGAAGAAACTACTCTCCCGTACCAACACGTCTGGAGTAGCACTTCCACTGAGCTTCACCTCAGAGTTAAATAAGAGTAGAATGTTTAAGGACTTTCCTGCGCACCTGATGACCTCACTGGCAAATGAGCCGCTTACAGAGAATTCTCACAAGTGGAGCATCACCACCAAGAGTTTTAAAGGTAATGAGAAGCTGAAAAAGTTCTACCGAATTCTGAGCACCAACACAGACGGACAGAAGGAGTTTGTGTCCACAGTGGAGGCTTATGACTACCCAGTCTATGGAACACAGTGGCACCCAGAGAAGAACGCCTTTGAGTGGACTCGTCCATACATCCCTCACACACCCTCTGCCATCAAAACCACTTTCTATATGGCTGACTTTTTCGTTAATGAAGCAAAGAAGAGTCTTCATAGTTTTAGCAGCCAAGAAGAGGAGCAGAACGCTTTGATTTACAACTACAGTCCATCATACACTGGAAAGACGTCTATATTTGAACAAATCTATTATTTTGAATAGTTGATCGGAACCCTGGAATGATTTAAAACTCTCTGTTTGAACTGagattttgaattaaaaaaattggaGTCAA

Function

NR:

description
PREDICTED: gamma-glutamyl hydrolase-like

GO:

id name namespace
GO:0006760 folic acid-containing compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0034722 gamma-glutamyl-peptidase activity molecular_function

KEGG:

id description
K01307 GGH; gamma-glutamyl hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677723.1 True 1117 mRNA 0.44 10 21339580 21349632

Neighbor

gene id symbol gene type direction distance location
LOC103043942 LOC108436149 coding upstream 848 21333746 ~ 21338732 (+)
LOC103041877 camk2d1,LOC107561529,LOC107730106,LOC107698678,LOC108436151,LOC108267517,LOC107732596 coding upstream 331574 20888963 ~ 21008006 (+)
LOC111194340 NA coding upstream 526736 20803300 ~ 20812844 (+)
LOC103044091 adcy1,LOC103368946,LOC102227141,LOC107721119 coding upstream 565425 20715544 ~ 20774155 (+)
LOC111194337 adcy1 coding upstream 672103 20611495 ~ 20667477 (+)
penk penk coding downstream 160109 21509741 ~ 21527223 (+)
LOC103045570 sdr16c5,LOC108436143 coding downstream 180709 21530341 ~ 21562050 (+)
rps20 rps20 coding downstream 242408 21592040 ~ 21598440 (+)
LOC103047292 tmem68,LOC107584594 coding downstream 274761 21624393 ~ 21632573 (+)
lypla1 lypla1,lypa1 coding downstream 368689 21718321 ~ 21724125 (+)
G143010 nsmaf,LOC107739938 non-coding upstream 14721 21320890 ~ 21324859 (+)
G143008 nsmaf,LOC107739938 non-coding upstream 22585 21315265 ~ 21316995 (+)
G143003 NA non-coding upstream 44680 21294545 ~ 21294900 (+)
G142951 NA non-coding upstream 190992 21144945 ~ 21148588 (+)
G142948 NA non-coding upstream 225927 21113255 ~ 21113653 (+)
G143020 asph non-coding downstream 12966 21362598 ~ 21389925 (+)
G143034 sdcbp non-coding downstream 46059 21395691 ~ 21404675 (+)
G143052 NA non-coding downstream 100163 21449795 ~ 21450047 (+)
G143058 NA non-coding downstream 110263 21459895 ~ 21460361 (+)
G143112 NA non-coding downstream 231792 21581424 ~ 21582666 (+)
G142820 NA other upstream 549458 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1119431 20202648 ~ 20220149 (+)
G142620 NA other upstream 1471288 19736306 ~ 19868292 (+)
G142378 gpaa1 other upstream 2446071 18856236 ~ 18893509 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other downstream 219450 21569082 ~ 21579724 (+)
LOC103047556 LOC108436107,LOC108267807 other downstream 249050 21598682 ~ 21611682 (+)
G143122 LOC108436138 other downstream 296273 21645905 ~ 21646705 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 461659 21811291 ~ 21908314 (+)
G143324 NA other downstream 1186053 22535685 ~ 22610447 (+)

Expression


Co-expression Network