LOC111194247


Basic Information

Item Value
gene id LOC111194247
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 21740241 ~ 21747485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677724.1
TATCACTCCTTTCCTCTAGAGGGCTCCACACtttattacatttcttttacatttttctgtgCAGCAAGGGGGAAGGAGGCAATATAGCCTTCTCAGCAtcagagagacacacaaagaaaactaaccTAACAAAGCTTAAACCTGTCGCTTGAAAACCTAAACTACATTGCCCCAGCGTGtttaaccGGCTGTCAAATATGCTGTGTATAGCCAGAGggcaataaaaacaacaacaaacaaaacaacaagttTATGTTATTCGTAACATAAAGTTAAACACGAAGGCGACATGTCTAACCCACAAGAGTCTGAGGGAGAAGAAGACCTCGCAACACTGAGGAGAAGGCGAGGACAAGCTAAAGCAGCAGTAACTAAAATGATAACAGCtgcaaatgtaaaaataagagaaaatgagCCTGAAGGGTTAAAGGCAGTACTGGAGAGCCTCAACCTAGCTGTCACTCAACTCCGAGAAGCACACAGGCTTTATCATGATAGGCTCACTGATGACACTGACAAAGAAGAGTCAGAAGCCTATGAGACGGTCATCTTGAGGAGTGTTCATGATGTGCGCCACGACGCTCTAGCCTGGCTGCAAGAAGTAAACACTCCTGGTGAATTTGATGATCAGTTAATTGCTGGTAAACTGGACACCATAAATCAAGATCATCCAGATGACACGGAGGATGATGACCTCGTGTCAGCTGAGCTAAAAAACTTACGTGCCTTGcgaaagaaagaacaagaaaactTTGAGCTGTTACTTCAACGCAACAAAGAGGAGTTTGAACTGGAACTCCAGCGAATGCATCACAAGGCCGAGCTTGATGCACAGATAATACACAATCAACAAAAGATGCAAGCTGTAACAACAGATCTATATTCTACACCTAAAGCTGGCAAGAGCCCACCAACAACACGACTATCACTGTCACCAGTATCAGAAGATTCAATCTcacaactgcttgaattatcaAGGCAGCAGTATCAGGCCCAAGTAGACTCCCTGAGGCTTCCACCAAATAACCTCATAAAGTTCAATGGTGACCCCCTTCAGTACTGGAGGTTCATAAGGCTTTTCACCACAGTGGTGGACAAagaatctgttgctgcagaaGAAAAGTTAACTCGTCTACACCAGTACACTGAAGGAAAGGCTCAAGATGCTATAAGTCACTGCTTATACAATCCTGATCCCAGTGCAGGCTTCAAGGAAGCACTTGAACGACTAAGAACAAGATTTGGAAATCCTCATACCATCTCCCAGGCTTGGGTTGAGAAAGTTTTGAACTTTAAAGAGATAAAAGACAATGTGCAACTCAGAGATTTCGCAGACCAACTGAGAGGCTGCAAGGATACGCTTTCTGCTATGAAATGTGAGGAAGAGCTCAGTGGTCGCCGCACACTAGTTGAAATCATCAGCAAACTGCCACCAGATCTCAGGTCCAAATGGCTAAACATAAACTATGAAATCACTAAGGGAGGACATCTACCTAAACTGGAGGACGTTGTCAACTTTGTTGAGACAGAGGCTGAGAAGAAATCTGACCCAGTCTTTGGTGGCATAGTGAGTTACAAGAAGCAGGAGAAACCAAGCAATGTAATGTTATCCACCAAAGGCTCAAAGAAATCTCGCCCAAGTTACTCTGCAAATGTTAAGGCAGCTGCAGTTCAAGAGAACAGGTCTTCACCCACCAAACGGCCAGCTAATTCAAAATGCCTAAAGTGTTCAGAGCTCCACTTCTTGAACCAGTGCCCAGCTTTCCGATCACTAACTGTGCCAGAGCGCCTCATGTTTGTCCAGGAGAAACACCTGTGCCAAAACTGTTTCATGATGGGTCATAGTGCTGAGGTATGCACACGAAATTGGGTATGCAATGTACCTGGCTGTGGTCAGAAACATAACAAATGGCTACACCCAAGCCACACTAACAAGCAAAATACAGGAGCAAGTCAGAATGCCACTAGTGACAATAAAACGACTCAACGAACGCAACCTACCCAACCACCTAACGTCACTTGTGGTTTTGCTGGTGCTGGAAAGGGTAAAGTTTGCTTACCTATTGTTCCTGTGATTGTTAGAGGCAAGGCTGGCAACATCAGTTCTGTCACATATGCATTGCTTGATCCTGGAGCCAACACAAGTTTAGTGTCAGAAGAACTCACAAAGAAACTCAAGCTCAAAGGCAAACCTGCAAGGCTGGATCTTGATACGGTGGGAGGCAGTCAAGAAGGCTTACTTTCTCTATGTGTGAACCTTGAGATAGACTCTCTTCATGATGGCAACATGTATACACTCAATGGTGTGAGAGCCCTAAGTAAGTTAAACATAGGCCTCAGCTGCCTTGCCACACCTGATGAGGTTGCCAGATGGGATCACTTAGCGGACATTCCTATCCCCAGTGTTAACTCTGATGATGTGCACCTCGTCATTGGTCAGGATGCCCCCCGCCTTCTCAGAGCTGAAGAATATCGTGTAGGTGGGGATAATGATCCATATGCCACAAGGACAGTGCTTGGTTGGGCCATAAATGGACCAATTGACTACAAGGAAGGCGGCAAGAATGTCAAAGCCTACTTCCTCAAGTCAGATCACAGTCTGCTAATGCAGGTGGAGAGGTTCTGGAAACTCGATGACACCCCCCAAAGGGACAGTCTATCAATCAATGACCAAAGGGTGATTAAACAATGGGAGAATTCAGTCTCTAAAGATGGCTCACATTACGTCTTAGACATACCCTTTAAGAACAAAGCAGTGGCACTACCAAACAATGTCAACTTAGCTGCACACAGACTGCGACTCCTGGGACGTAGACTGGCAAAGAATGCAGACTTGCAAATTAAGTACGTGGATGCTATGAAGTCAACCATCAGCAATGGCTATGCAGAAGCAGTTCCCGCTTCATTTTCTGATCACAATGAAGGGAAAGTATGGTACCTCCCGCATCATCCGGTAATTCATCCTCGTAAGCCGGACAAGGTACGAGTCGTCTTTGATTGTGCAGCTAAGTACGATGGAGTATCGCTCAATGATGTTGTCCATCAGGGACCAGACCtaacaaacaaattaataacTGTGCTGATCCGATTCAGGCAAGGTCCTGTTGCTATGATGGCAGACATCGAAGGCATGTTCAACCAGATTTATGTAACACCAGACCACAGAGACGTTCTCCGTTTCCTGTGGTGGAAGGAACATGACCAAAAGAATGAGGTAGTTACCTACCGTATGACATCTCACCTCTTTGGCGGAGTGTGGTCTCCAAGTGCAGCAAGTTTTGCTTTAAGAAAATGTGCATCCGACCATGCACATTTGTATGATGCAGACACCGTCTCCACTGTAGAAAGGAATTTTTACGTGGATGATTGTTTGAAATCTTCTGACTCACCTCAACAAGCCATCCAGCTAGCAGCGCAGCTGACTGATCTACTCAGACAAGGAGGGTTTCACTTGACCAAATGGACAAGCAATTCCGCAGAGGTCCTGAAGTCTATCCCAGAGCAGGAACATGCAAAACGCTCACCGTCGTTAGATCTGGATCGAGATCCATCCATGGAGAGAGCTCTGGGCGTGTTATGGGACATAAAAGGTGACTGCTTCACATTCAgtgtaaatgttaaagacaAACCCAACACCAAAAGAGGCATGTTAAGCACAATAAGCTCAGTTTATGACCCCTTGGGTTTAGTTGGCCCATTCATTTTACGAGGAAAGGCATTATTCCAGTCACTGTGTCGTATGAAGCTAGGCTGGGACGAATCCATTCCTAGCGAGATTGCTGAGCAATGGGGCCGGTGGTTGGATGACCTGCCAAGGCTCTGCAAGTTACAAATTCCTCGATGTCTCAGACCAACAGTCTATACTGTACCTTCAGTCACCATGCAGCTGCATCACTTCAGCGATGCGTCTGAGTTGGGATACGGTGCCGTCTCCTATCTCCGGCTTGTTAGCCATGATAACATATACTGTAACATCATCATGTCCAAGAACAGGCTGGCTCCAGTCAAAACAACCACTATCCCAAGACTAGAGCTGGCAGCAGCAGTGGTAGCAGTGCAGCTTGACCAGAAAATCCACCAAAGCTTTGAGCTACCCCTACTGGACTCCGTCTTCTGGACTGATAGCACCATTGTGCTGCATTATACCAGAAATGAAGATAAAAGGTATCAAACCTTTGTCGCTAATAGAATCTCACAGATCCGTGAAGTCTCAGAAGCCTCGCAATGGAAATACGTCTGCACAGAAGACAACCCTGCAGATGATGTTTCTAGAGGATTATCAGCTGAAGAACTTGGAAGCAAAGAGCGCTGGTACAACGGCCCTGCTTTCCTATGGCAGAAAGAGGAGTTTTGGCCTCTCCAGCCAGAACTAGGCAACTTACCTCCAGAAGCTGAAGTAAAGAAATCAAGTCAGACATACACAATCTCATCTAAGGTCACCACTAATTCAGCAGTTGATTGTTTCATTCAGAAGTATTCCTCCTGGTACAAACTCAAGCGAGCTATTGCATTGATCTTACGTGCAAAGGATATTCTTTTGAAGAAGACGAAAACCAAACTATGCGCATCGATAACGCTTAATGACCTGAAGCGTGCAGAGAGTTCCATCATTGACTATGTTCAACGCTCCCAGATCACCAAACAACTGAAGGATGACAACTTGAGGAAGCTAGCACCAGTACGCCTCGGTGATGGGCTACTTCGAGTCGGAGGCAGACTCACCCATGCTCCAATACCCGAAGCAGCAAAACACCCAGTGATCTTGCCACAGAAGCATCATGTCAGTGAACTCATCATATGGCACTTCCACAAACTTACAGGTCATTCAGGAGCTGAGAGGGTCCTCTCAGAGATTAGGCAATCCTTCTGGATAGTCAGAGGACGCAGCACAGTGAAACGAGTTCTAGCACAGTGCATACCATGTAAGAGGCACAGAGCTCCAGTCAGTACACAATACATGGCCGACCTGCCAGCTGACCGTGTGACTCCAAGTCAACCACCTTTCACCAGTGTTGGAGTGGATTACTTCGGTCCCATTAACATCAAGAGGGGACGCAGTGAGGTGAAGAGGTATGGTTGCCTGTTCACGTGTCTAACTACCAGGGCCATTCATTTAGAGGTAGCGCACAGTTTGGATACAGATTCTTTCAAAAACGCGCTCCAGCGTTTCATGGCTCGTAGGGGAACGCCTCGATTGATACGCTCAGACAACGGATCAAATTTCGTCGGTGCCCGTCATGAACTACAAAAGGCACTGGACGAATGGAATCAACAAAGGATTGAAGAGCATCTACTCCAAAGAGAAACACAATGGAAGTTCAACCCCCCAGCAGCCTCACACATGGGAGGTGCATGGGAGAGGCAAATCCGTACAGTGCGTTCTATTCTCATGGGCCTTACAGGACAGCAGACTTTGGACGATGAAGGATTAATGACGCTCTTCTGCATCATTGAGAAAATTGTCAATGGTCGACCACTAACAAAGCTGTCGGAGGACCCAAGAGATGGTCAGCCTCTGACTCCCAATGATTTGCTTCTGTTAAGACCCGAATGTTCTCTACCCCCTGGTCACTTCGTGAAGCAGGATCTATACCGTCGACGCTGGCGCCAGGTCCAGTACTTGGCAGATGTGTTCTGGGCTAGGTGGATAAAGGAATATTTACCTAGCCTACAGCAAAGGCAAAAGTGGACCTACCATTCCAGAAACTATCAAGTAGGTGATCTAGTGCTAGTTCTGCATGAATCTACTCCTCGTAGTCAGTGGCCCCTTGGATTGGTCATTGATGTCAATGTAGGAGCTGATGGACTGGTACGCTCAGTACAAGTAAAGACAGAAACAGGCATTTACACTCGACCTATCCACAAGTTATGTTTGCTGGAAGGGTATATGGATAAGTAAGCTCTACAGACTCTCAGCTTTTACTTCTCGTGAGACTGTTACAATAGTTGTTGattatatgtttgttttaacaGTTATTTCTCTAAAGTGCATTTATTTCTGTATCATTAAGTAGTCGTTCACCAATTTTACTTGGATGACCATCTGTTGAGGTCATCGGGGCCGGGATGTTGGTATCACTCCTTTCCTCTAGAGGGCTCCACACtttattacatttcttttacatttttctgtgCAGCAAGGGGGAAGGAGGCAATATAGCCTTCTCAGCAtcagagagacacacaaagaaaactaaccTAACAAAGCTTAAACCTGTCGCTTGAAAACCTAAACTACATTGCCCCAGCGTGtttaaccGGCTGTCAAATATGCTGTGTATAGCCAGAGggcaataaaaacaacaacaaacaaaacaacaagttTATGTTATTCGTA

Function

GO:

id name namespace
GO:0005179 hormone activity molecular_function
GO:0030545 receptor regulator activity molecular_function
GO:0048018 receptor ligand activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677724.1 True 6337 mRNA 0.46 3 21740241 21747485

Neighbor

gene id symbol gene type direction distance location
lypla1 lypla1,lypa1 coding upstream 16116 21718321 ~ 21724125 (+)
LOC103047292 tmem68,LOC107584594 coding upstream 107668 21624393 ~ 21632573 (+)
rps20 rps20 coding upstream 141801 21592040 ~ 21598440 (+)
LOC103045570 sdr16c5,LOC108436143 coding upstream 178191 21530341 ~ 21562050 (+)
penk penk coding upstream 213018 21509741 ~ 21527223 (+)
LOC103039256 LOC103039256,LOC108436134,LOC108267332 coding downstream 72043 21819528 ~ 21839338 (+)
chmp5 chmp5,chmp5b,LOC108436133 coding downstream 102780 21850265 ~ 21856543 (+)
LOC103040396 myom1 coding downstream 132625 21880110 ~ 21938486 (+)
malrd1 NA coding downstream 210535 21958020 ~ 22107652 (+)
LOC103046886 plxdc2,LOC107724400,LOC107684879,LOC107659453,LOC107598695 coding downstream 375421 22122906 ~ 22356385 (+)
G143172 mrpl15 non-coding upstream 25066 21711366 ~ 21715175 (+)
G143127 NA non-coding upstream 38296 21700822 ~ 21701945 (+)
LOC111194179 NA non-coding upstream 81621 21655779 ~ 21658620 (+)
G143114 NA non-coding upstream 97383 21634242 ~ 21642858 (+)
G143112 NA non-coding upstream 157575 21581424 ~ 21582666 (+)
G143189 NA non-coding downstream 107642 21855127 ~ 21956720 (+)
G143282 NA non-coding downstream 637852 22385337 ~ 22385673 (+)
G143283 NA non-coding downstream 731181 22478666 ~ 22566331 (+)
G143334 NA non-coding downstream 822539 22570024 ~ 22576268 (+)
G143336 NA non-coding downstream 824228 22571713 ~ 22572857 (+)
G143122 LOC108436138 other upstream 93536 21645905 ~ 21646705 (+)
LOC103047556 LOC108436107,LOC108267807 other upstream 128559 21598682 ~ 21611682 (+)
plag1 plag1,LOC107730125,LOC107698667,LOC107660303,LOC107705642,LOC107570428 other upstream 160517 21569082 ~ 21579724 (+)
G142820 NA other upstream 950119 20782583 ~ 20790122 (+)
rnf138 NA other upstream 1520092 20202648 ~ 20220149 (+)
G143182 mlrn,LOC103039566,LOC106517213,LOC104925296,LOC105008240,LOC106578694 other downstream 63806 21811291 ~ 21908314 (+)
G143324 NA other downstream 788200 22535685 ~ 22610447 (+)
LOC111194251 NA other downstream 1637683 23385168 ~ 23395240 (+)
LOC111194174 NA other downstream 1656203 23403688 ~ 23406894 (+)
G143836 NA other downstream 2080463 23827948 ~ 23916082 (+)

Expression


Co-expression Network