dars2 (LOC104960769,LOC104948518)


Basic Information

Item Value
gene id dars2
gene name LOC104960769,LOC104948518
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 177663 ~ 192997 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677734.1
gtgtgtgtgtgagtgtgtgtgtagagtgtccTCTGGTGCCGGTTATACAGTacgatgtgtgtgagtgtgtgtgtgtgagtgtgtgtagtgtgtgtgtttagtacaGGATCTGACTGATATGAATGTGTGGAATATGAGAGCACGCGCCGCGCGGTGAGGATCACAGGGTGACCCGTGGAGTTAAGAGTTTTcatcactgtgtttaaaaagttcaaAGTGTTGGAGTTTCTCTTACTCACACCTGCTCAGGTATTTCTATAATGAGACTCAGATCTACATATCTACTGCTGAGAGCAGCTCACCTGACCCCGCGCGCGCTCAGCAGGAGAGCTTTACCTGTAACAGCAGCACAGCTGACCCAGGCTCCTCCCACTCCATCCCACCTGTACTGCACCAAAGCCCCCTGCAGATACACTGCTACCCACACTACAGGTGATCTCAGCAGTTTGTCTGTAAGGAGTCATACCTGTGGAGAGCTGAGTTCTGATCATGTGGGAGAGGAGGTGACGCTCTGCGGCTGGGTTCAGTACCTCAGAAATGATCTGTTTGTGATTCTGAGGGATTTCAGTGGGCTGGTGCAGGTTCTAATCCCACAGGAAGAGTGTGAGCTGAAGGGGGCGCTCTGTGGTTTATCTGTGGAGTCGGTGATTAAGGTCAGAGGGAGGGTCCGGCCTCGTCCAGCAGGACAGGAGAATAAGaacATGCTGACGGGGGGGATTGAGGTTCACGCTGAGAGTCTGGAGGTTCTGAACTCCTGTAAGAAACTTCCTTTTGAGATAAAAGACTTTGTGAAGAAGTCGGAGGCTCTCCGGATGCAGTACCGGTATCTGGACCTGCGCTCGTCTCAGCTGCAGTATAATCTGAGATTAAGATCACGGCTGGTGATGAAAATGCGAGAGTATCTCTGTAATTTACACGGATTTGTGGACGTTGAGACTCCGACTTTGTTTAAAAGAACTCCGGGGggTGCAAAAGAGTTTGTGGTTCCGACCGGAGAAGCGGGGAAGTTTTACTGCCTCCCGCAGAGCCCGCAGCAGTTCAAACAGCTCCTGATGGTGGCGGGTCTGGACCGGTATTTCCAGATGGCGCGCTGCTACAGAGACGAGGGATCTAAACCCGACAGACAGCCGGAATTCACTCAGGTGGACATAGAGATGTCCTTCGTGGATCAGGACGGGATCAGGGCTCTGATTGAGGGGCTGCTGAGTTTCTCCTGGCCTGAAGATAAAGAGCCGCCCGGCGTCCCGTTCCCCTGCATCACCTACCAGCAGGCCCTGAGCGAATACGGCACCGACAAACCCGACACTCGATTCAGAATGAAGctggtGGATGTAACCGAGGTGTTCCGGGACTCAGAGATTGGGTTTCTGAGGGCGGCGCTGGAGGAGCCAgggggaggagttcaggccatCTGTGTTCCAGAAGGAGGAaaactTCTGAAGAGTAAAGAGGTGGAGCTGCTGAAGCAGACGGCCAGGACTCAGTTCAGCCAGgaggtgagcagtgtgtgtgtggatggatgggtgaagTCTCCTCTGGGTCGGTTGATGGGTGATGGGGTGAGGCAGCAGCTGATGAGGGCGACGGGAGGCGGCGCTGGAGACCTGCTGCTGATCACCGCCGGAACTCCAGAGCGCGTGCGCCCCCTCCTGGggaagctgaggctgcagtgtgCGGAGCTGCTGGAGGGTCACGGCGTGCGTGTGCGTGACCCCTCAGTCTTTCACTTCCTGTGGGTCGTGGACTTCCCGCTCTTCCTGCCTAAAGAGGACGACCCCGATCAGCTGGAGTCCGCCCACCACCCGTTCACCGCCCCCGTCCCCGAGGACCAGCACCTCCTCTACACCCAGCCCAGCCAGgTTCGTGGTCAGCACTATGATCTGGTGCTGAACGGTTGTGAGATCGGCGGCGGCTCCATCCGGATCCATAACGCAGCTCAGCAGCTCCACGTCCTGCAGAACATCCTCAGAGAGGATCCGGCTCAGCTGTCTCACCTGTTGGAAGCGCTGGACTCCGGAGCGCCCCCTCATGGCGGGATTGCTTTAGGGCTGGACCGGCTGGTGTCCATCATCGTTGGAGCTCCCAGCATCCGGGACGTCATCGCCTTCCCCAAGTCCTTCAGAGGTCACGACCTGATGAGCGGCGCTCCTGATTGGTTGTCGGAGGAGGAGCTGAAGTCCTATCACGTCTCTGTGGCGTGGCCGAGCTCGGCCGGCGGAGACGACAAACAGGCCTGACCGCTCCGCTCCGGACTCCATCTCCAACTGTCTCTCAGCCGTTAATCCAGTTAGAGCCGTTAGGACCGTTAGGGCTGTTAAGTGTTTGTGAGGAGGGTAAGAGACTGTGTAGCGGTGGCTGTCCTCTCTCGGTGTTTGCCGCCGGTGATTGCTTCGGTGCGGTAGCCGAACCGTGACCCCATCTCAGAAAAGAATTACACAGCGTCCGaatgagagagagcgcgagagcgcgAGAGCAACATCACTGAACCACCTCTCGCCGTATCCCTGACCCGCCACGCACGCTATTACCGACCCGCACACCGCCGGCGTCCAGAACACCGACCCAACTCCGGTTCTGAACAGCGCTGATCAGATCCATACTGAAGCTCACCTCAGCACCTACTCACTTCACAGTAATGTGTgctgaaaaaataaagactaaaaacttcaaaa

Function

NR:

description
aspartate--tRNA ligase, mitochondrial

GO: NA

KEGG:

id description
K01876 DARS2, aspS; aspartyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677734.1 True 2672 mRNA 0.56 17 177663 192997

Neighbor

gene id symbol gene type direction distance location
klhl20 klhl20 coding upstream 4614 161857 ~ 173049 (+)
LOC103047317 kif2c coding upstream 91552 75683 ~ 86111 (+)
LOC103023540 kiss1ra,LOC108411985,LOC107657423,LOC107599909,LOC107722062 coding upstream 136915 31377 ~ 40748 (+)
astn1 astn1 coding downstream 245701 438698 ~ 694723 (+)
tnr tnr,LOC107658355 coding downstream 621841 814838 ~ 969334 (+)
kiaa0040 kiaa0040 coding downstream 793424 986421 ~ 987706 (+)
cacybp NA coding downstream 847893 1040890 ~ 1044717 (+)
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922 coding downstream 853270 1046267 ~ 1057525 (+)
G137639 cenpl non-coding upstream 1025 175080 ~ 176638 (+)
G137629 NA non-coding upstream 47424 127102 ~ 130239 (+)
G137630 NA non-coding upstream 48964 128168 ~ 128699 (+)
G137596 NA non-coding upstream 108801 55706 ~ 68862 (+)
G137627 NA non-coding downstream 312 193309 ~ 193938 (+)
G137669 NA non-coding downstream 150871 343868 ~ 357819 (+)
G137670 NA non-coding downstream 153728 346725 ~ 354561 (+)
G137725 NA non-coding downstream 333251 526248 ~ 527067 (+)
G137729 NA non-coding downstream 461224 654221 ~ 654449 (+)
G137614 NA other upstream 83090 93285 ~ 94573 (+)
rfwd2 rfwd2,LOC107658354 other downstream 569718 762715 ~ 781196 (+)
G137756 kiaa0040 other downstream 787983 980980 ~ 988638 (+)
mrps14 mrps14 other downstream 844864 1037861 ~ 1039970 (+)
G137826 LOC108430781,LOC108267757 other downstream 1298819 1491816 ~ 1499956 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 1642480 1835477 ~ 1851313 (+)

Expression


Co-expression Network