LOC103047582 (apol1,LOC107103896)


Basic Information

Item Value
gene id LOC103047582
gene name apol1,LOC107103896
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1070007 ~ 1082321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677754.1
GGCGCTGTTGTGCAGAACCGCCTAATACCATAACAGAGCGCAGTGTTTAGTGTAAGTTATAAGTTATACGCAGTTTAATGTCGTTTTTCTCTTCGTAAACTGTTTAAACTCGGGAATCCGCAggtgtggaggtgtgtttggACTCAGGGAACAGAAGGGAGGGAGGAATGCTGGGTGGAATTTTTAAAACGACCCCAAACACCTGTGACACACCTACCACTCTCTCAGTTGATAGAGAGGCTTCGGCCAGCAGTGGTGATCATGCAGTGACCAGCgATAATGCAGGCTTGCTAAGCGGCCTGTTCAGACGATCACCCAAACCCAGCCCGAAATCAGCTCACGGACAGgaaaaTCCACTTGTTCAGACCGAGTCAAACCAATCAAATCAACCCAGTAGTGGGATGTTTGGATGGATTTTCAGGAACCCGTTCGGCTCCTCAGTTCAGGAGCGGGAAAAAGCAGAGCCGCCTGGAGATACACACTCAGAATCCACCCAGAAGACTAGCTCATGTCCTGATGGGACGACTGAAGAAGACAGCTCCTTAAATCAGACTGGTGTGAGCTCAGAAATTACAGACAGTGTGTTAAAAGCAGACGAGACGCCCCCCATCCCCCCCAGACCCACCCAGGAGgagCTCAACACTACCCTGATTTACAGACtgagtcttctccatccagcagaGAGTGACTGCACTCAGGAATCAGTGCAATCGGTGGACCAGTGCCCAGTCAAAGCAGCACAAGATGAAGACCATCAGGATGACGCTGAGGAGTGTGCTTCCATTACGAGTCAAAAGGACAAAGATGGCAAAGAGGAAACGGCTGAAAAATCAAAAAGCACACTGCCAAAGAAGAAGATagtgaaaaagaagaagaatccaTTTATGCCTCATGTTGTGCCCAAGGGTAAAGTGCAGCAGAAGAAGagtggagctggagctgaaccTGTGGAGAGTGAAGTGCAGAAGAAGTCCCTCATGGAGCAGCTGAATGAGCTTCGCTTGGAGAAAGCTCataaggaggaagaggagGATCTTGAAGGCCTGATGGAGTGGTGGAGCACAGTTAAACAATGGGAGCAGATGCCCAAAGAGGAAGATAtgacagaaaaagaagaggCCAAGGCGTTCGCGGTGACGGCAGAGAAGATCCAGAGGGGGATCCGAGTGTTTAACCAGCTGTTCTCAGAGCGAGCTGAAGGTCTCTGGCAGCACGTTATTGATTTGCGGGCGATTGCTGACGGTCTGGACCGCTTCAACTGGAGAACCAAAGTGGCGCAGATCACCGGCGGCTCCACCAGCGCCGTGGGTGGAGTGGCGACCATCACCGGCCTCGCCCTGGCGCCGGTTACAATGGGAACCTCCCTCATCGTGACGGCGGTGGGCCTTGGCGTGGCGGCGGCCGGCGGCCTCACCTCCGCGTCTGCTGGGATCTCCAACGCTGTCAACAACTCCATGGACCGCAAGAAGGTGGAGCGCATCGTGGAGGACTACCAGAGCAAGATGGCCGACCTCAACAAGTGCATGAAGTTCATCAAGCAGGGCATCGAGAACCTGCGTCAGTTTAACCTGCTGAGGGTGAAGAAACAGGCCTACAACCGGGACTTCCCCGGCCTCAACAGCGTCTACGAGGACGGAGCCATGGCCAGCAAAGCCATCCTCAGCAACGCCAACGAGATCATGCGGGTGGTGCAGATTGCCAACGTGGCGGGCAGCACGGCGGCCCGAGCCGTCCAGATCGCCAGCATGGCCACCGGTGTGCTCACCGGGCTCTTCGTAGGCATGGACATCTACTTCGTGACCAAGGACTCGCAGGAGCTCAGGAAAGGAGCCAAATCCGAATTCGCCGCCAAGATCCGAGAGGTGGCCGACCAGCTGCACGAAGGACTGGTGGAGCTCAACACCATCCGAGAGGAGCTGCAGTGCTCGGGATCCAACGCTGGAGCACCAGATACCAACCCTGCCTGCACCTCCACCGAGCTCTGAGGAACACCGGGAGAAGAGCGAGCTCAGTCCAGACTCACAGCAGGCTTAAAGAATCACGGTTATAgacttttatatacttttattgaCTTTTTAGACACTTTAGTCTAGTGTTTTAGGGGTTGTTTGGGTTTAAAAGGTGTTAAAAGATGCATCTCTTCACCTGGTCAATCTATTTTTCTCGTAGTTGAATAATAAGTGACTGCAAACATttccttttaaactttttatggtcgtaatatttaatatattgaaagtttatttatgttttgtatGGATAATGTGTGGTGGTGCCACAGTGTGTTGCACAGTTCCAGGGGCTTGGGGTTGGGGGTTCGATCCTCACTCCTTGGTGGACTATTTTCGTATCCACATGGGTTTTTCTGGAATAATCCCAAAAATACATGTGGAAAAGGAACTGCCTGTGCCGAGTTACCCCTTAAATACAAGTGGGTATGTGTTAACTGTGTGAATGGTTGTGTATGGCACTAGGACTCTTGGTTAGCTTTAGACTCAGTTTAAACCTGACCAGAAAGAAGCGAaaaagagatggatggatgtaggGCTGGACAgtaattcaataataatatttatcatgataaaaaatgttttaaatacattttcaatatGTCAGTATAACAATCTTAAAAATGCACTAATGCTACTTATttactaatactaattatttaaaaatcatactatgattttctggattttctgttAAATTCTGTCTCTCACAGTTAAAGTTTACCTACAATAAAAATTACAGACCTATATCAGGATATGAATTATATCCGTAATGTAGATCCAGCAATAGATAGATTTTGTAtaaaagttttagttttaatatatttaagagtGTCCAGATTTGAGAAACAAAGTTGGCGTATTCCAGCTGCTTTAAAGTCCTTTATTCCTTGTTtcctcatttttatttaattagtaattttgcattttatttcatGTGTAAATCGAGGGAGGAGAGTctggagagacagacagtccgaactgctcgaggtctattgtgaagtttccaccaataagtgatggtttggagagtcatgtctgtcatctgctggtgttgatccactcttatgaagatttcattttccagcaggacttggcacgctCCCCACACAGCCAAAAGTACTGTACAATATTCtctttttctgagacactatttttaggtttcattggctgtaagcttcataatcaataatcaacaatga
>XM_022677755.1
CGGGAATCCGCAggtgtggaggtgtgtttggACTCAGGGAACAGAAGGGAGGGAGGAATGCTGGGTGGAATTTTTAAAACGACCCCAAACACCTGTGACACACCTACCACTCTCTCAGTTGATAGAGAGGCTTCGGCCAGCAGTGGTGATCATGCAGTGACCAGCgATAATGCAGGCTTGCTAAGCGGCCTGTTCAGACGATCACCCAAACCCAGCCCGAAATCAGCTCACGGACAGgaaaaTCCACTTGTTCAGACCGAGTCAAACCAATCAAATCAACCCAGTAGTGGGATGTTTGGATGGATTTTCAGGAACCCGTTCGGCTCCTCAGTTCAGGAGCGGGAAAAAGCAGAGCCGCCTGGAGATACACACTCAGAATCCACCCAGAAGACTAGCTCATGTCCTGATGGGACGACTGAAGAAGACAGCTCCTTAAATCAGACTGGTGTGAGCTCAGAAATTACAGACAGTGTGTTAAAAGCAGACGAGACGCCCCCCATCCCCCCCAGACCCACCCAGGAGgagCTCAACACTACCCTGATTTACAGACtgagtcttctccatccagcagaGAGTGACTGCACTCAGGAATCAGTGCAATCGGTGGACCAGTGCCCAGTCAAAGCAGCACAAGATGAAGACCATCAGGTGAACACACCTTTTATGGATGACGCTGAGGAGTGTGCTTCCATTACGAGTCAAAAGGACAAAGATGGCAAAGAGGAAACGGCTGAAAAATCAAAAAGCACACTGCCAAAGAAGAAGATagtgaaaaagaagaagaatccaTTTATGCCTCATGTTGTGCCCAAGGGTAAAGTGCAGCAGAAGAAGagtggagctggagctgaaccTGTGGAGAGTGAAGTGCAGAAGAAGTCCCTCATGGAGCAGCTGAATGAGCTTCGCTTGGAGAAAGCTCataaggaggaagaggagGATCTTGAAGGCCTGATGGAGTGGTGGAGCACAGTTAAACAATGGGAGCAGATGCCCAAAGAGGAAGATAtgacagaaaaagaagaggCCAAGGCGTTCGCGGTGACGGCAGAGAAGATCCAGAGGGGGATCCGAGTGTTTAACCAGCTGTTCTCAGAGCGAGCTGAAGGTCTCTGGCAGCACGTTATTGATTTGCGGGCGATTGCTGACGGTCTGGACCGCTTCAACTGGAGAACCAAAGTGGCGCAGATCACCGGCGGCTCCACCAGCGCCGTGGGTGGAGTGGCGACCATCACCGGCCTCGCCCTGGCGCCGGTTACAATGGGAACCTCCCTCATCGTGACGGCGGTGGGCCTTGGCGTGGCGGCGGCCGGCGGCCTCACCTCCGCGTCTGCTGGGATCTCCAACGCTGTCAACAACTCCATGGACCGCAAGAAGGTGGAGCGCATCGTGGAGGACTACCAGAGCAAGATGGCCGACCTCAACAAGTGCATGAAGTTCATCAAGCAGGGCATCGAGAACCTGCGTCAGTTTAACCTGCTGAGGGTGAAGAAACAGGCCTACAACCGGGACTTCCCCGGCCTCAACAGCGTCTACGAGGACGGAGCCATGGCCAGCAAAGCCATCCTCAGCAACGCCAACGAGATCATGCGGGTGGTGCAGATTGCCAACGTGGCGGGCAGCACGGCGGCCCGAGCCGTCCAGATCGCCAGCATGGCCACCGGTGTGCTCACCGGGCTCTTCGTAGGCATGGACATCTACTTCGTGACCAAGGACTCGCAGGAGCTCAGGAAAGGAGCCAAATCCGAATTCGCCGCCAAGATCCGAGAGGTGGCCGACCAGCTGCACGAAGGACTGGTGGAGCTCAACACCATCCGAGAGGAGCTGCAGTGCTCGGGATCCAACGCTGGAGCACCAGATACCAACCCTGCCTGCACCTCCACCGAGCTCTGAGGAACACCGGGAGAAGAGCGAGCTCAGTCCAGACTCACAGCAGGCTTAAAGAATCACGGTTATAgacttttatatacttttattgaCTTTTTAGACACTTTAGTCTAGTGTTTTAGGGGTTGTTTGGGTTTAAAAGGTGTTAAAAGATGCATCTCTTCACCTGGTCAATCTATTTTTCTCGTAGTTGAATAATAAGTGACTGCAAACATttccttttaaactttttatggtcgtaatatttaatatattgaaagtttatttatgttttgtatGGATAATGTGTGGTGGTGCCACAGTGTGTTGCACAGTTCCAGGGGCTTGGGGTTGGGGGTTCGATCCTCACTCCTTGGTGGACTATTTTCGTATCCACATGGGTTTTTCTGGAATAATCCCAAAAATACATGTGGAAAAGGAACTGCCTGTGCCGAGTTACCCCTTAAATACAAGTGGGTATGTGTTAACTGTGTGAATGGTTGTGTATGGCACTAGGACTCTTGGTTAGCTTTAGACTCAGTTTAAACCTGACCAGAAAGAAGCGAaaaagagatggatggatgtaggGCTGGACAgtaattcaataataatatttatcatgataaaaaatgttttaaatacattttcaatatGTCAGTATAACAATCTTAAAAATGCACTAATGCTACTTATttactaatactaattatttaaaaatcatactatgattttctggattttctgttAAATTCTGTCTCTCACAGTTAAAGTTTACCTACAATAAAAATTACAGACCTATATCAGGATATGAATTATATCCGTAATGTAGATCCAGCAATAGATAGATTTTGTAtaaaagttttagttttaatatatttaagagtGTCCAGATTTGAGAAACAAAGTTGGCGTATTCCAGCTGCTTTAAAGTCCTTTATTCCTTGTTtcctcatttttatttaattagtaattttgcattttatttcatGTGTAAATCGAGGGAGGAGAGTctggagagacagacagtccgaactgctcgaggtctattgtgaagtttccaccaataagtgatggtttggagagtcatgtctgtcatctgctggtgttgatccactcttatgaagatttcattttccagcaggacttggcacgctCCCCACACAGCCAAAAGTACTGTACAATATTCtctttttctgagacactatttttaggtttcattggctgtaagcttcataatcaataatcaacaatgaa

Function

symbol description
apol1 Predicted to enable lipid binding activity. Acts upstream of or within glomerular filtration; glomerular visceral epithelial cell development; and pronephric glomerulus morphogenesis. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; integument; liver; and pleuroperitoneal region. Used to study kidney disease. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis. Orthologous to human APOL1 (apolipoprotein L1); APOL3 (apolipoprotein L3); and APOL5 (apolipoprotein L5).

NR:

description
PREDICTED: apolipoprotein L1-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677754.1 True 3211 mRNA 0.47 18 1070007 1082320
XM_022677755.1 False 3120 mRNA 0.47 18 1070117 1082321

Neighbor

gene id symbol gene type direction distance location
plk3 plk3,LOC107722069,LOC107563563,LOC107658359,LOC107726922 coding upstream 12482 1046267 ~ 1057525 (+)
cacybp NA coding upstream 25290 1040890 ~ 1044717 (+)
kiaa0040 kiaa0040 coding upstream 82301 986421 ~ 987706 (+)
tnr tnr,LOC107658355 coding upstream 100673 814838 ~ 969334 (+)
astn1 astn1 coding upstream 375284 438698 ~ 694723 (+)
LOC103047078 NA coding downstream 2487 1084808 ~ 1089511 (+)
htr5a htr5a,htr5ab,LOC103024346,LOC108412811,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 coding downstream 45756 1128077 ~ 1166419 (+)
insig1 LOC108412812 coding downstream 135189 1217510 ~ 1223829 (+)
LOC103046777 NA coding downstream 158914 1241235 ~ 1245769 (+)
rbm33 rbm33 coding downstream 218264 1300585 ~ 1335193 (+)
G137754 NA non-coding upstream 58012 906454 ~ 1011995 (+)
LOC103021626 NA non-coding upstream 83853 980933 ~ 986154 (+)
G137737 NA non-coding upstream 319597 749841 ~ 750410 (+)
G137729 NA non-coding upstream 415558 654221 ~ 654449 (+)
G137725 NA non-coding upstream 542940 526248 ~ 527067 (+)
G137782 NA non-coding downstream 19067 1101388 ~ 1226517 (+)
G137839 NA non-coding downstream 268953 1351274 ~ 1455746 (+)
G137850 NA non-coding downstream 357942 1440263 ~ 1440805 (+)
G137856 NA non-coding downstream 425944 1508265 ~ 1509554 (+)
G137857 NA non-coding downstream 427332 1509653 ~ 1512939 (+)
mrps14 mrps14 other upstream 30037 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 81369 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 288811 762715 ~ 781196 (+)
G137614 NA other upstream 975434 93285 ~ 94573 (+)
G137826 LOC108430781,LOC108267757 other downstream 409495 1491816 ~ 1499956 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 753156 1835477 ~ 1851313 (+)
G137929 NA other downstream 940434 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1818154 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1999735 3082056 ~ 3084865 (+)

Expression


Co-expression Network