LOC103022156


Basic Information

Item Value
gene id LOC103022156
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1723535 ~ 1735903 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677770.1
CAGGCACTGGtgtgaagtaagtgtgtgtCTGGTTGGCACGTGTGACGTCACACGAATTATCCGCCCGTGGCCCTGGAGCCGTGTGTTAGGTGTGTAAGTGTATTAGCCTAATCCTGTGGAGATGTGCTCCACACTGATCCCAGCATTAAcgtagtcacacacacacacactcagacagacacacacacacactcagacacatgGATGAAGATGCACTGTAGATGTGGCCTGTTGTGATGGATCTATTCTAAGCCAGAGGAGCCCAGATTCACTCAGCTCCTCCACACTGAGCAGCACCATGTCAGGACTGAACTCACTGGTGTGGAGCTTCCTGCTGCTTTCTGCAGGAGCTCTCAGTGAGGAGACCGCTGAGGTGTGTGACTCCAGCCCGTGTCAGAacgggggtgtgtgtgtgggtctggGTGATGGGTacaggtgtgagtgtgtagatCAGCCCCGGGACGGGCTCCTGTACGGGGGGGAGAACTGCGCGGTGCTGCTGCTGGGCTGTGAGCGGCACCGGTGCCAAAACGGAGCCGCGTGCTCTCCGTACCTCAACAACGGACGCCACCGGTACCAGTGCTCCTGCCCCGTGGGCTTCACCGGGACCCGGTGCCAAACATCCACCACCTTCTCCTTCGAGCACCGCGGCTTCCTCCACATCCAGAGCCCTGTACAGGACACCACACTGACCCTGAACCTGACCCTGAGCTTCAGGACCGTCCAGAGCACCGCCACCCTGCTGCAGTGCCAGGTGAGCGAGCAGTACCTCACGCTGGAGCTACGGGACGGCCGCCTACGCCTCACCCTCCAGCAGGTCCAGGACATCCACTCAGTCCTGgtggagctgctgctggatgtctcaGACGGCCTCTGGCACACCGTCCACGCTTACCTGAACACCGACGGCCTGCTGGGGGTCAGTCTGCTGGACCCCTCCTGCACCCTTGAGACCTGCCACAAGGTGGCGCTAGTGGAGGGGTCCGAATCAAACTCCCTGCCTGAACTGGGCTCCGGCCTGCAGGAGATCCAGAGCGTGTTTATTGGTGGGACTGGGGAACATCAGCAGGACATTTACAGCATAGAAGACGTTACTGTGGAGGGCGGACCCGGCTCTTATTTCCTGGGCTGCATGCGGGACGTCCGGCTCCACTCCCGGACGGTGGTTCCGGGATCAGGGCTGAATCAGGTCAACCTCAGCCTGGGCTGCAGCGAGAGGGATACCTGCCAGGACGTCCCGTGTCTGAACAGGGGCAGGTGCATCAGCCTGGGGTGGAGGAAACACACCTGCGAGTGCCATCGACCGTACGAGGGGGACGACTGCTCTGAGGAGTACATTGCTGCTCGCTTTGGAAACGAAGACCTGGAGAGCTACGCTGTGTTTTCCATAGACGATGAGCCTGGAGAGTCTTTCACCCTGTCCATGTTTGTGAGAACCCGTCGGCTGCAGGGTCTTCTCCTGGTGCTTTCCAACAGCACCAGCCAGTACCTCCGGCTGTGGCTGGAGGACGGAAAGGTCAAAGCTCAGGTCAACAACTTTGAAAGCCTGCTGAGCCGGGACAGCATTAACGACGGCCACTTCCACCTGCTGAGCGTGTTCCTGCAGCCGGGGAGACTGAGCCTCACCCAGTCTGCCAAACCCCAGGGCAGCATGGCCACCCGGAGGCTCACGGTCCAGGCTGGAGACGCCGTGCACGTTGGAGGACTGCCAGACCGTAAAGCCTCCTTGGCTTTTGGAGGTTATTTTAAAGGCTGCATCCAGGACTTAAGGCTGGGCTCCAGGCGCCTGCAGTTTTACTCCATCAACAGCACAGTCAGCTCTTACACCCTGGACACCATGGTGGAGGTGACCCGCGGCTGCACCGGAGATAACTCCTGCAACAAAAATCCCTGTCTGAATGGCGGCGTGTGCTACTCCATGTGGGACGACTTTACCTGCAGTTGTCCTCCCAACACAGCAGGGCGGCGCTGTGAGGAGGTGAAGTGGTGTGATCTCTCTCCATGTCCCTCGTCTGCGTCCTGTCAGACACACAGCCAGGGCTTTGAGTGTGTTTCGAACGTGACTCTTCGTGAAGGCAGTACTGTAATCACACACAGAGGCAACGGAAAGATCCGGCGGCTCCTGTCCAGCGTCTCCCTGAGTTTCCGCACCAGGAAGCGGGATGCTACCCTGCTTCACGCCGAGCACCGGTCCAAGTTCATCACTGTCTCTCTTCAGAATGAACATCTGGTTCTGGAGCTGCAGGTCGGAGAGGCTGCCCCCTTGCTGCATGTACAGAGCCGGATGGCAGTGAGTGATGGACTCTGGCACAGTGCCGTTCTGAGCATGGACAGTCCTGCTCTTCCAAACTCCACCTGGACTATGGTTGTGGACCAGCGACAAGAAGAAGCCTCGGTGTCTTCTGTAGCGTCTGGAAATCTGGACTTCCTAAAAGAAGACGTGGACATCCTGCTCAGTGGTTTGGGACCGTGGGCGAATCTGGAGGGATGTCTGGGTTGGGTGGAGATTGGCAGACTTTCGTTGCCTTTCTACAGCCAGGCTGAGCTCAGTCTGCCCAGGCCTCAGGAGGAACAGTTTTTGAGGACTTCTGGAAGTCCACGCTTCGGCTGCCAGGGGTCCAGGGTGTGTGAACCCAACCCTTGCCAGAACGGAGGGCAGTGCCAGGACCTGTTTGACCTATTTCGGTGCCATTGCCCCTCTGCCTGGGGCGGACGGGTCTGCGAGACTAATGCAGACGCCTGCTTCTCAAACCCTTGCGTCCACGGTTCCTGCCACATGGTCTCTGAGGGTTACGAGTGCTTGTGTGAGGCGGGATACACCGGTCACCACTGTGAAGAAGATGTGGACATGTGTGCAGGACACAAGTGCAGCAACGGAGGGACCTGTCTAAGAGGTCTGAAACAATATGCCTGTCTCTGCCCGAGAAACACCACCGGACGTTACTGCAGAGAAAGAGTTCCAGAACTCCCATGGTACATCGACAGGATCCCGTTTCCCAAGTTACAGGTCTCAGTCTGTGGGGACGATAAGTGGAACTATAGCTGCTTCAATGGAGGAAACTGCTCAACTTCGGAGGGGATGTGTGATTGTATGCCTGGTTTCACTGGACACTgGTGTGAGATGGAGCTGGATGAGTGTGCCTCCAACCCCTGCCTGAACGGAGGATACTGCCGCAACCTCGTCAACAAGTTCCACTGCATGTGTGAGATGAGCTTTGCAGGGGAACACTGTCAGATCGACGTCAGCGACTTTTACCTCTACGTCTTTCTGCTCCTGTGGCAGAACATCTTCCAGCTGCTCTCCTACCTGATCCTCCGCCTGGACGACGACCCCGAGATCGAGTGGAACGCCGCCAACGATGACTAGACACAGTAATGAGGCCTGAGGGGGTTTATTCTTCTTCTATGTGTTTAACAATGAGATGGGATGAAGAGCATTCTCAAAAAACCCTTAATTTTCCAAGAGGATTTTTGCAGGACTGGCAACGTTGTATATAAGTGGTACATTTGGGTACAGTAAAGTCCATgaagaaaagaacacagcagGACACACTGGTATTCAcctgttttaagtttttatatatatattgttcatatgGCAAATTTAACAGCCACCAAAAACTATTAAATACTATTTCACAATCAATTT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0003008 system process biological_process

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677770.1 True 3649 mRNA 0.56 11 1723535 1735903

Neighbor

gene id symbol gene type direction distance location
LOC103022771 NA coding upstream 31296 1684393 ~ 1692239 (+)
LOC111194189 NA coding upstream 85280 1626955 ~ 1638255 (+)
cdc73 cdc73 coding upstream 129459 1564930 ~ 1594076 (+)
LOC111194186 NA coding upstream 232195 1489305 ~ 1491340 (+)
rnf32 NA coding upstream 274508 1436940 ~ 1449027 (+)
LOC111194259 NA coding downstream 4268 1740171 ~ 1746238 (+)
tsc22d2 NA coding downstream 41322 1777225 ~ 1802319 (+)
LOC103043726 LOC103043726,LOC105899208 coding downstream 74822 1810725 ~ 1817212 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding downstream 119394 1855297 ~ 1860515 (+)
LOC103042278 NA coding downstream 133571 1869474 ~ 1915019 (+)
G137880 NA non-coding upstream 2581 1720742 ~ 1720954 (+)
LOC111194188 NA non-coding upstream 86870 1633487 ~ 1636665 (+)
G137837 NA non-coding upstream 186254 1532189 ~ 1537281 (+)
G137833 NA non-coding upstream 191612 1524712 ~ 1531923 (+)
G137858 dcaf8 non-coding upstream 205607 1516479 ~ 1517928 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding downstream 26135 1762038 ~ 1770190 (+)
G137890 NA non-coding downstream 69024 1804927 ~ 1806180 (+)
G137889 NA non-coding downstream 72302 1808205 ~ 1809612 (+)
G137898 NA non-coding downstream 143169 1879072 ~ 1879392 (+)
G137831 NA non-coding downstream 180244 1916147 ~ 1918411 (+)
G137826 LOC108430781,LOC108267757 other upstream 223579 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 683565 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 734897 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 942339 762715 ~ 781196 (+)
G137614 NA other upstream 1628962 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 99574 1835477 ~ 1851313 (+)
G137929 NA other downstream 286852 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1164572 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1346153 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1379517 3115420 ~ 3119488 (+)

Expression


Co-expression Network