tsc22d2


Basic Information

Item Value
gene id tsc22d2
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1777225 ~ 1802319 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677773.1
TGCGGTGGGTTTAGCGCTGCTGCTCCGCGGTCTGAGCGCCGTTCCCACACACAGTCTGCAGATCAGCGCTACAGGAAAAGAGACTAAAACACACCGCGGCCGCCTGTCTGACTCAGACCCAGGCTGCTCCGGAACGGCGCGGGCGCgtctttctccttctttcccGGAGTGTTTTGGTACTTGTTCTGGAGGCGGAGGCCGAGGCCGGCGGTGGATGCGAGGCCGCGGGCAGCCTTCCCGCTTCGGCCCGCAGAAAGCAGCCTCAGCCCGGGGAGCTCGACGGCCACGCCGGCGTCGCTTCGGAGCCCGGCTCGGAGCCTGAAAAGCTGCGTTTAGGCCTCTTCAAGTCGGGTTTGTAGTGCGGactctgtttttaatcaccCGTCGTCTCCTTAATGCCCTCGGAAAGGACTTTTCTGAGCTTTTTTGAAGGtttaactgtgttaaaaaagTCGTCGAAAAATGCAACaggagagaagaggaagagcgACGGTGACGCACAGGCTAACGGCAGCTAGCGCTAAAATCTGAGAGAAGCTCGTCCAGGTTTCCTCTGCTGCGTTTCTGGGGCGAAGTAGCGCGTTAGTcttagtttttaaacatttttgggtCGTATTTGGTGCCTGGCTGGTGCTCACAGACCCTGTTTCAGACATGTCTAAGATGCCGGCGAAGAAAAAGAGCTGTTTTCAGATCACCAGCGTGACTCAGGCTCAGGTGGCCGGCAGCGGCCAGCCTGACGACACGGAAAGCCTGGACGATCCGGACGAATCCCGGACTGAGGACATTTCTTCATCCGAGATCTTTGACAGTGTGTCCCGGACCGAGCTGGAGGCGGGCACCGGCGAACGCAGCTCGTCCGAGGAGACTCTGAACAACGTGGGAGAATCCGAGGGTCCTCCTCCTTCTCACAAGCCGGGATTGTTGGCTCCTTCCAACGGAGGCGTGGGGCCTAGGGAACTGGGAACCTTATCTGGTGGAGCCTTGCCTGGGAGCTTACATTCACCTGGAGTCGTGGGCTATCAAGGGCCACAGGGGCCTGTCCAGTCGTCCCAGTTGCCCCAGGTGACCCAGTCAtcatcctcctccacctcctctggGGCCTTCAGTTCTCGCTTCAGGCTTATCAAACTTGACCACAGTACTGGAGAACCCTTCAAGAGAGGCAGGTGGACCTGCACGGAGTATTATGAAAAAGACCCTGATGTGGGCAGTAGTAGAACTGTGGACAGTATAAGGCACACGAATGTGAGCGTGGTGAGTGAGCAAGGCACggacagagatagagacagtGGGCTCGGGGCCACAATAGGATCCGTGACCCGCCCTTCTGGCCTCTCTGGTCAGGGGGACGAGCCGCCCGCCCTCGACCCATCCTTGCTCCATGGGTCTCTGCATCCTTTCGAGCAACATGGTTATGGTATTGTGCCACAACAGGTGCCTCCTGGCTCTGGGACGGTGACCTCTGACGCCCTCGGTAGCAAACAGCAGCATCAGGCCCCTGCAGGCCCTGGTTCTCATGTCACCAACGTTCCTCACAGCCTTCTCCCGCCCGGGCACAATGGGTTGCAGCAAGGCGGTCATCACGTTCAGAAGCAGCTTGGAGTTGCACCAACAATTTCTCAGCAGCAGACAATGCTCTATCAGgcccaacagcagcagcagcagacacagcagcagcagttaccTCTTGGACATCACCTGCCCAACCAGCCGGGCCTAGCCGAATACGCACAGCAGCATCTGCCTCTGACTGTCGCCCAAACACATCCCGGTGCTAGCTTGTCTGTGGTTCACCCAGCCAGCCAGGGGCCTTCACCCGTCCCAACTCCAGCAGCGGGGGGCATGCCTGTGTTGGGTGTTCCTGGGGATATGACGGGCCTGCCTGTTCCTTTACCAGGGGGCCAGCCTGGGCCTTCAGTTTCAAACCTGTTGCCCCAGCTTGGGGCAGGAATGATTAGTGGAGTGAGCGCTATTCCTACAGGACAGTCATCAGTTCAGTTGGGACAGTATCCACCCTCAAGTATGGCAGTGCCTCCACAGAACGCCCAAACGTTGCCAGCAGTGCCCACATCAGCTGGGATGGGCGGTGCGCCCGTTACGGGTGGGCACTCCCCAATGCCAGCCAGTGGAGGCGTGCCTGTACCCATGCCCAATGCAAGCTCGTCTCAAGCCCAAGTGACCCGCAACGCAGCAGCCGTGGGTGGGTTCGGCCAGCTGGAGGAGGGCCGCAGGAAATCGGACGTTCTGGCCCAGGTTCCTCTGATGCCTGGGAAAGATCTGGGCAAGCCCCTGATCACGGAGGACCTGCCTTTGGCCACCCCTGGAGTGAACAGCCTGTTTGGAATAACCATCCCTATTGATGGGGATGATGACAGGAACCCTTCTACAGTTTTCTACCGAGCCTTCCAGCCAGGCAGTAGGCTGCGCGACTCGAAGCCTCTGGGCGATAGtGCCTCTGGAGCAAGTGTCGTTGCCATTGATAATAAAATAGAGCAAGCAATGGATCTGGTGAAAAGCCATCTGATGTACGCGGTGCGAGAGGAGGTGGAGGTTCTGAAGGAGCAGATTAAAGAGCTGTACGAGAGGAACTCTGTGCTGGAGCGGGAGAACGCTGTGCTGAAGAGTCTCGCCAACAACGATCAGCTCTCTCAGCTTTCCTCCCCTGCCTCCAACCCCAGCAACAACCCCAGCAACCCCAGTACAAACCCCAGCAACCCCGGCAGCACTCCTTCACAGCCTCTGCCTCAGTTCCAGCCTGAGATCAGCCAAGCCATGAGCCCGCCGCTGCAGCCGCTCCCGCCGCAGCCCAGCGTCACCTCCGCTTAGAGCTCCGCCCCCTTACCTTCCTCACCGCATAATccgcggggggggggggaagaaACATCCTCAAATTACAGGGGTACTTCAGTATTTTTCTAAACCTAATCTGAATTGTTGCAGATGAGAACAGAAGCCTGAAGCCAAAAAAAGGGTTTTCAGCCTTTTTTCCAaattctgcacaaaaaaatatatataaaaaatacaatcaaaGCGTTAAAACCACGGTCGACATCATCTGCACCAGAGATTATGTTAAAAAGTATTGAAGCATCTcaaaatatattctattatgatgaaaataatacaataaaaaaaacaattgtcttgTTCACCACCAGCTTGGAAAAAGCAaaacgtcaaaaaaaaaaaagagaaaaaatcaaCGAGCAGTGCTTCAGTGTGTGTCCGTGCTGTCAGCCTTCCCCGTGTCAGGATGGACCAGTGACCAGTGAGGTCGGAGGATTTTAATGTTTGCCAGCAAAAGGGGCGGAGCCGAATGAtttagaagtgtttttttttttttgttcatttttgtttttttttagtaaaaaaaaaaaaaa
>XM_022677776.1
CGGTGGGTTTAGCGCTGCTGCTCCGCGGTCTGAGCGCCGTTCCCACACACAGTCTGCAGATCAGCGCTACAGGAAAAGAGACTAAAACACACCGCGGCCGCCTGTCTGACTCAGACCCAGGCTGCTCCGGAACGGCGCGGGCGCgtctttctccttctttcccGGAGTGTTTTGGTACTTGTTCTGGAGGCGGAGGCCGAGGCCGGCGGTGGATGCGAGGCCGCGGGCAGCCTTCCCGCTTCGGCCCGCAGAAAGCAGCCTCAGCCCGGGGAGCTCGACGGCCACGCCGGCGTCGCTTCGGAGCCCGGCTCGGAGCCTGAAAAGCTGCGTTTAGGCCTCTTCAAGTCGGGTTTGTAGTGCGGactctgtttttaatcaccCGTCGTCTCCTTAATGCCCTCGGAAAGGACTTTTCTGAGCTTTTTTGAAGGtttaactgtgttaaaaaagTCGTCGAAAAATGCAACaggagagaagaggaagagcgACGGTGACGCACAGGCTAACGGCAGCTAGCGCTAAAATCTGAGAGAAGCTCGTCCAGGTTTCCTCTGCTGCGTTTCTGGGGCGAAGTAGCGCGTTAGTcttagtttttaaacatttttgggtCGTATTTGGTGCCTGGCTGGTGCTCACAGACCCTGTTTCAGACATGTCTAAGATGCCGGCGAAGAAAAAGAGCTGTTTTCAGATCACCAGCGTGACTCAGGCTCAGGTGGCCGGCAGCGGCCAGCCTGACGACACGGAAAGCCTGGACGATCCGGACGAATCCCGGACTGAGGACATTTCTTCATCCGAGATCTTTGACAGTGTGTCCCGGACCGAGCTGGAGGCGGGCACCGGCGAACGCAGCTCGTCCGAGGAGACTCTGAACAACGTGGGAGAATCCGAGGGTCCTCCTCCTTCTCACAAGCCGGGATTGTTGGCTCCTTCCAACGGAGGCGTGGGGCCTAGGGAACTGGGAACCTTATCTGGTGGAGCCTTGCCTGGGAGCTTACATTCACCTGGAGTCGTGGGCTATCAAGGGCCACAGGGGCCTGTCCAGTCGTCCCAGTTGCCCCAGGTGACCCAGTCAtcatcctcctccacctcctctggGGCCTTCAGTTCTCGCTTCAGGCTTATCAAACTTGACCACAGTACTGGAGAACCCTTCAAGAGAGGCAGGTGGACCTGCACGGAGTATTATGAAAAAGACCCTGATGTGGGCAGTAGTAGAACTGTGGACAGTATAAGGCACACGAATGTGAGCGTGGTGAGTGAGCAAGGCACggacagagatagagacagtGGGCTCGGGGCCACAATAGGATCCGTGACCCGCCCTTCTGGCCTCTCTGGTCAGGGGGACGAGCCGCCCGCCCTCGACCCATCCTTGCTCCATGGGTCTCTGCATCCTTTCGAGCAACATGGTTATGGTATTGTGCCACAACAGGTGCCTCCTGGCTCTGGGACGGTGACCTCTGACGCCCTCGGTAGCAAACAGCAGCATCAGGCCCCTGCAGGCCCTGGTTCTCATGTCACCAACGTTCCTCACAGCCTTCTCCCGCCCGGGCACAATGGGTTGCAGCAAGGCGGTCATCACGTTCAGAAGCAGCTTGGAGTTGCACCAACAATTTCTCAGCAGCAGACAATGCTCTATCAGgcccaacagcagcagcagcagacacagcagcagcagttaccTCTTGGACATCACCTGCCCAACCAGCCGGGCCTAGCCGAATACGCACAGCAGCATCTGCCTCTGACTGTCGCCCAAACACATCCCGGTGCTAGCTTGTCTGTGGTTCACCCAGCCAGCCAGGGGCCTTCACCCGTCCCAACTCCAGCAGCGGGGGGCATGCCTGTGTTGGGTGTTCCTGGGGATATGACGGGCCTGCCTGTTCCTTTACCAGGGGGCCAGCCTGGGCCTTCAGTTTCAAACCTGTTGCCCCAGCTTGGGGCAGGAATGATTAGTGGAGTGAGCGCTATTCCTACAGGACAGTCATCAGTTCAGTTGGGACAGTATCCACCCTCAAGTATGGCAGTGCCTCCACAGAACGCCCAAACGTTGCCAGCAGTGCCCACATCAGCTGGGATGGGCGGTGCGCCCGTTACGGGTGGGCACTCCCCAATGCCAGCCAGTGGAGGCGTGCCTGTACCCATGCCCAATGCAAGCTCGTCTCAAGCCCAAGTGACCCGCAACGCAGCAGCCGTGGGTGGGTTCGGCCAGCTGGAGGAGGGCCGCAGGAAATCGGACGTTCTGGCCCAGGTTCCTCTGATGCCTGGGAAAGATCTGGGCAAGCCCCTGATCACGGAGGACCTGCCTTTGGCCACCCCTGGAGTGAACAGCCTGTTTGGAATAACCATCCCTATTGATGGGGATGATGACAGtGCCTCTGGAGCAAGTGTCGTTGCCATTGATAATAAAATAGAGCAAGCAATGGATCTGGTGAAAAGCCATCTGATGTACGCGGTGCGAGAGGAGGTGGAGGTTCTGAAGGAGCAGATTAAAGAGCTGTACGAGAGGAACTCTGTGCTGGAGCGGGAGAACGCTGTGCTGAAGAGTCTCGCCAACAACGATCAGCTCTCTCAGCTTTCCTCCCCTGCCTCCAACCCCAGCAACAACCCCAGCAACCCCAGTACAAACCCCAGCAACCCCGGCAGCACTCCTTCACAGCCTCTGCCTCAGTTCCAGCCTGAGATCAGCCAAGCCATGAGCCCGCCGCTGCAGCCGCTCCCGCCGCAGCCCAGCGTCACCTCCGCTTAGAGCTCCGCCCCCTTACCTTCCTCACCGCATAATccgcggggggggggggaagaaACATCCTCAAATTACAGGGGTACTTCAGTATTTTTCTAAACCTAATCTGAATTGTTGCAGATGAGAACAGAAGCCTGAAGCCAAAAAAAGGGTTTTCAGCCTTTTTTCCAaattctgcacaaaaaaatatatataaaaaatacaatcaaaGCGTTAAAACCACGGTCGACATCATCTGCACCAGAGATTATGTTAAAAAGTATTGAAGCATCTcaaaatatattctattatgatgaaaataatacaataaaaaaaacaattgtcttgTTCACCACCAGCTTGGAAAAAGCAaaacgtcaaaaaaaaaaaagagaaaaaatcaaCGAGCAGTGCTTCAGTGTGTGTCCGTGCTGTCAGCCTTCCCCGTGTCAGGATGGACCAGTGACCAGTGAGGTCGGAGGATTTTAATGTTTGCCAGCAAAAGGGGCGGAGCCGAATGAtttagaagtgtttttttttttttgttcatttttgtttttttttagtaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: TSC22 domain family protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677773.1 True 3383 mRNA 0.55 4 1777225 1802319
XM_022677776.1 False 3306 mRNA 0.55 3 1777227 1802319

Neighbor

gene id symbol gene type direction distance location
LOC111194259 NA coding upstream 30987 1740171 ~ 1746238 (+)
LOC103022156 NA coding upstream 41322 1723535 ~ 1735903 (+)
LOC103022771 NA coding upstream 84986 1684393 ~ 1692239 (+)
LOC111194189 NA coding upstream 138970 1626955 ~ 1638255 (+)
cdc73 cdc73 coding upstream 183149 1564930 ~ 1594076 (+)
LOC103043726 LOC103043726,LOC105899208 coding downstream 8406 1810725 ~ 1817212 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding downstream 52978 1855297 ~ 1860515 (+)
LOC103042278 NA coding downstream 67155 1869474 ~ 1915019 (+)
dpp6 LOC108430761,LOC108267703 coding downstream 299902 2102221 ~ 2230065 (+)
LOC103042593 LOC108430758 coding downstream 519719 2322038 ~ 2362870 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding upstream 7035 1762038 ~ 1770190 (+)
G137880 NA non-coding upstream 56271 1720742 ~ 1720954 (+)
LOC111194188 NA non-coding upstream 140560 1633487 ~ 1636665 (+)
G137837 NA non-coding upstream 239944 1532189 ~ 1537281 (+)
G137833 NA non-coding upstream 245302 1524712 ~ 1531923 (+)
G137890 NA non-coding downstream 2608 1804927 ~ 1806180 (+)
G137889 NA non-coding downstream 5886 1808205 ~ 1809612 (+)
G137898 NA non-coding downstream 76753 1879072 ~ 1879392 (+)
G137831 NA non-coding downstream 113828 1916147 ~ 1918411 (+)
G137902 NA non-coding downstream 119234 1921553 ~ 1924855 (+)
G137826 LOC108430781,LOC108267757 other upstream 277269 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 737255 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 788587 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 996029 762715 ~ 781196 (+)
G137614 NA other upstream 1682652 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 33158 1835477 ~ 1851313 (+)
G137929 NA other downstream 220436 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1098156 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1279737 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1313101 3115420 ~ 3119488 (+)

Expression


Co-expression Network