LOC103043726 (LOC103043726,LOC105899208)


Basic Information

Item Value
gene id LOC103043726
gene name LOC103043726,LOC105899208
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1810725 ~ 1817212 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677778.1
CAGAGTTTAGCTTCGGCGTTACCAAACAGGAGTATTGCACGTGAGAGTCCCGTATCGCGTGCACATGCACTGCTTTGTAGTTGCAGCGAAGAGAACACTGAACATCTTCCAGACGGCGGCTAAAGTCCCGCGTGCTGCAGGTTTACACGCGCTTTTAGACGGCAGGGCTGCGAGCATGTCTGCGAAAAAGGCTGAGCTGAAGCGGAGGGGCGGCTCGGGTCAGGCTGAAGGAGCCGGGGGGAAGAAGCAGAGGAGTGGGgagagtgctgctgctgcaggggGGAGGGAGGACGGCTGGCTGGGGCTGGAGGTGGCGGAGCTGCGCGCTAAAAACACCGGCTGCAAGTTTAACGACAAGCGCGTGCGGTTCCTCTCCGAGGAGCAGAAGGTGAAGCAGAGCTGCTCGGGCGTGCTGTACTGGATGTCGAGAGACCAGAGGGTTCAAGATAACTGGGCACTGATCTATGCACAGCGGCTCGCTCTGGCTGAGGAACTGCCACTCCACATCTGCTTCTGCTTGGTGCCGCGGTATCTGGACGCAGCCTACCGTCAGTATGCTTTTATGATCAGAGGACTGCAGGAGGTGGCCAAGGAGTGTAAGAGTCTGGATATTCAGTTCCACTTCCTGCGTGGTGATCCTGAGCAGCTGCTGCTTGACTTTGTGAAGAGCTGGAATATAGGAGCACTGGTGACAGATTTTAACCCCCTCAGACTGCACCTGCAGTGGATTGAGAATGTCAGAAAGGGGCTTCCGTCAAACATCCCGTTCTTGCAGGTTGATGCCCATAACGTGGTGCCATGCTGGGAGGCCTCTCCTAAGCTGGAGTATGGGGCTAGGACCATCAGAGGGAAAATCACCAAACAACTCCCAGATTTCCTCACTGAATTCCCACCTGTGGACACACATCCTCACGCCTCAAAAAAAACGGCAAAGTCGGTGAACTGGGAGGAGGTTCTGGATTCGGTGGAGGTGGACCGGACTGTGGGTGAGGTGGAATGGGCGCGGCCGGGCACCTCTGGAGGAATGGCCATGCTCGAGTCGTTCATCCAGCAGCGGCTGCGTCTCTTCGCTACCGAGAGAAACAACCCGAACTCGGAGGCTGTCAGCCATCTCTCACCCTGGTTACATGCTGGTCAGCTGTCCGCTCAGCGCGTGGTGAAGGAGGTGCAGCGCTGGGGGAAGAACGCCAGGGAGTCCGTGGCCTCCTTTACAGAGGAGCTGGTGGTGCGCAGAGAGCTGGCTGATAACTTCTGCTACTATAACAAAGAATACGACAGCATTGCAGGTGCTTATGACTGGGCAAAGACCACGCTGAAGATCCACGCTAAAGACAAAAGAGCTTATTTATACACCCAGGAGCAGCTGGAGACGGGCAAAACCCACGATCAGCTCTGGAACGCTGCACAGAGGCAGCTGCTGTTAGAGGGGAAGATGCACGGGTTCATGAGAATGTACTGGGCCAAAAAGATCCTGGAGTGGACCTCGTCCCCTGAGGAGGCGCTGACCATCGCCCTCTATCTGAATGACCACTACTCGCTGGACGGCTGTGACCCCAATGGATACGTAGGCTGCATGTGGTCCATCTGTGGGATCCACGACCAGGGCTGGGCTGAACGGCCTGTTTTCGGTAAAGTGCGCTACATGAATTACGCCGGCTGTAAGCGTAAGTTCGACGTGAGCCGGTTTGAGAGGAagtatgcagtaaaaactgACTGAGAGCGGGTGGCCAACATCTGTCAAACAGCTGGAAACCTGCCTCCAGTGCCTGAACTGTTACATGTGTTTACATTGTTGTTTCTATTTCCAGAAGATTCATCTCAGGTCCTATTGTATAAATCTGTTCATCTTTAAGCCTTTTTTAGCACTTtaatttctttctatttttaattgaaCTGGCAGATCTCTTGTTTAGATTTCTCCAACAATAAACTCTTTCTGGTCTATAAATGTTTAGAGTTTGTTCTTTGATTTGTTATTGAtcagctcaatggggtttaagagacaactgtttattttcctttaaatataaagtttttGCAATGTATTACATTAAACTGGCTTCTGTGTCTTAA

Function

NR:

description
cpd photolyase, partial

GO:

id name namespace
GO:0018298 protein-chromophore linkage biological_process
GO:0006281 DNA repair biological_process
GO:0003904 deoxyribodipyrimidine photo-lyase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K01669 phrB; deoxyribodipyrimidine photo-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677778.1 True 2073 mRNA 0.52 9 1810725 1817212

Neighbor

gene id symbol gene type direction distance location
tsc22d2 NA coding upstream 8406 1777225 ~ 1802319 (+)
LOC111194259 NA coding upstream 64487 1740171 ~ 1746238 (+)
LOC103022156 NA coding upstream 74822 1723535 ~ 1735903 (+)
LOC103022771 NA coding upstream 118486 1684393 ~ 1692239 (+)
LOC111194189 NA coding upstream 172470 1626955 ~ 1638255 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding downstream 38085 1855297 ~ 1860515 (+)
LOC103042278 NA coding downstream 52262 1869474 ~ 1915019 (+)
dpp6 LOC108430761,LOC108267703 coding downstream 285009 2102221 ~ 2230065 (+)
LOC103042593 LOC108430758 coding downstream 504826 2322038 ~ 2362870 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding downstream 578745 2395957 ~ 2405369 (+)
G137889 NA non-coding upstream 1113 1808205 ~ 1809612 (+)
G137890 NA non-coding upstream 4545 1804927 ~ 1806180 (+)
G137827 pfn2,pfn2l,LOC107681776 non-coding upstream 40535 1762038 ~ 1770190 (+)
G137880 NA non-coding upstream 89771 1720742 ~ 1720954 (+)
LOC111194188 NA non-coding upstream 174060 1633487 ~ 1636665 (+)
G137898 NA non-coding downstream 61860 1879072 ~ 1879392 (+)
G137831 NA non-coding downstream 98935 1916147 ~ 1918411 (+)
G137902 NA non-coding downstream 104341 1921553 ~ 1924855 (+)
G137917 LOC108430762,LOC108267465 non-coding downstream 170602 1987814 ~ 1988466 (+)
G137930 NA non-coding downstream 207981 2025193 ~ 2028808 (+)
G137826 LOC108430781,LOC108267757 other upstream 310769 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 770755 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 822087 980980 ~ 988638 (+)
rfwd2 rfwd2,LOC107658354 other upstream 1029529 762715 ~ 781196 (+)
G137614 NA other upstream 1716152 93285 ~ 94573 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other downstream 18265 1835477 ~ 1851313 (+)
G137929 NA other downstream 205543 2022755 ~ 2024386 (+)
LOC103045052 cfap57,LOC106594647 other downstream 1083263 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 1264844 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 1298208 3115420 ~ 3119488 (+)

Expression


Co-expression Network