LOC103042593 (LOC108430758)


Basic Information

Item Value
gene id LOC103042593
gene name LOC108430758
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2322038 ~ 2362870 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677788.1
gagagagagagagagagcagcaccatggacagaggcggagagagagaggcgctgGAGGAACCGGAGCGTGAGCGAGCGCAGTCCGCGCGGTACAGGAGAGAGACGCGCTCTGAGAACAGGATCTAAATGAAGCATCAAGTTCTCTAACTTTacctttcttcttcttgtctctctctctgtctttttctttctttctgtctttctctttctatctgtctctctctctctctgtctgatcTCACGCGAGAACAGAACACAACAGAACATCCCCCGCTGCTCGGTCTCCTCGCGCGTGAAGCGCTGTTTGGAAGAGCGGCTCAGATGGAGGATGGAGTTCTGcaacttctttctttctcctcctcctcctcctgtttCTGCTCTTCTCTCCGTCTGAGCAGCGCGTGCACGCGTACAGGGGCAGCGTTGCTTCAGTCTGAAACGTCTCGCTGTGTTTGTTGTGGTGGTGGGCGCAGGCTGGCAGCATGGGGGCACTGCTGCTGTGGCTCCTCATGCAGATGGAGCTTTTTCAGGGCTCCAGTTACGTCTACGTCTACGGGTACGGCTACGTGGACTGGGCAGATGGAGAAAATGCACGTGGGGACGCCGAAGCGGCTCAAAAGCCCACTGCACGTGCCACCATCGTGCACCGCCTGGAGGAGGACGTGCCAAAGGTGGTGGCCGCCTTCCTGCACACGGGAGACTCGTCCACGTTGACCCGTGCCAACTGTTCACGGCGATATGAGCTGGGCGGATTACgaacctcctcctcttcctcttcctcctccgtGTCCCGTCACTCGCTGCGTCCCGCCGTGGAGGCCGTGGGACGAGCTGCCAGCCTGCTGAACGGCCTGCAGCCGCTGGGGGACGGGCAGCAGCAACGGGACGCGGTCTGGTTGGGCGCGTTGGTGCGCAGCATGCTGGACGCGGACCCCAGGATACACCGGGCGGCCTTGGCGCTCCAGGCTGAGCCCCGGCTGCTCCTGCAGGCGACCCGCAGCGGAGGACATGTGGCGGTGAGGAACATGAAGGAGTCTGATCACGAGGAGTtcagggagaggaagaggaccCACGGGGGCAGAGGCCGGGGTCACGAGCCGGGAGAGATAAAGTGGTCAGCGCCGTATCTGGAGTGCGAACACGGGAGCTTTGCGCCGCACTGGCTGTTAACGCTCTCAGCAGGGATTTACTCGCCTGCAAAGGACGCAGCAGTTCCAGAGCTCAGaggAATAGTGAAAGTTGATGTCAATCTTCAAGATGAAGATATTGACCAGTGCTCCAGCAGTGGCTGGTTTGCAGGCACTCACCGCTGTAACTTGACTACTATGGAGTGTAAACCTGTCCCAGGCCATGGCTTTGTTCTGGACAAGTACAAGTGCCAGTGTAAGAGAGGCTTCTACTCGCCCAGGCGAGTGGCACTCAACGGCGTCTCAAAATCAGAGCAGGGTCTCTACAGCGATGATTTCTCGGACTCGTCCGCTCGGTGTCTGCCGTGTCGTGAGGGCTGCTCGTTCTGTCAGGATGATTCTCCGTGTCTGGCTCAGGAGGACGGGGTCCTGCGGGTGGCCGTGGCTTCATTCCAGGGCCTCTGCATGCTGCTGGACTTCATCAGCATGCCGGTGGTCTACCACTTCCGCCGAAACAAGAGAATTAGAGCTTCAGGTCTGATCCTGCTGGAGGCCATCCTGGCTGGAGCCATTCTCCTCTACTTTCCTGTGATGATCCTGTACTTTCAGCCGAGTGTTTTCCGCTGCGTTCTGCTACGGTGGGTCCGGCTCCTGGGCTTCACTACAGTCTATGGAACAGTAATCCTCAAACTGTACCGGGTTCTGAAGGTGTTCCTGTCGCGTACGGCTCAGCGGATCCCCTACATGACCAGTTGGCGAGTGCTGCGTCTGCTGGCCGCCATCCTGCTGGTGgttctctggtttctggtgGCCTGGACCTCAGCCATGTGCCAAAGCACAGACGTCCATCACACCCTGGTGGATGTGGGCGTGACTCCAGAGGGCCTGCAGTTCAACATGTGCATGCTGGACCGCTGGGACTACATGATGGCTGTTGccGAGTTCCTGTTCCTGCTGTGGGGCGTCTATCTGTGCTACGCCGTGCGAACCGTGCCCTCGGCCTTCCACGAGCCGCGCTACATGGCCGTCGCCATCTACAACGAGCTCCTCATCTCTGCAATATTCCACATCATTAGGTTCACCCTGGCTCCTGGATTACACCCTGACTGGATGCTCATGTTATTTTTTGTCCACACACATCTGACGGTGACGGTGACTCTCGGACTGCTGCTCATACCCAAGTTTGTATTTACTGAGACTCACATGCAGGATGACATTGCGACAGAGGCCTACGAAGACGAGCTGGATATGGGTCGGTCCGGTTCTTACTTGAACAGCAGCATAACTTCCGCCTGGAGTGAACACAGTTTGGATCCCGAAGACATTAGAGAGGAGCTAAAGAAGCTCTATTCCCAGCTAGAAGTCTACAAGCGAAAAAAGATGTTGGCCAATAACCCTCATCTCCAGAAAAAGCGCAGCTCCAAAAAAGGCATTGGGCGTTCGCTCATGAGGCGCATCACCGAAATACCAGAGACAGTGAGTCGCCAGTACAGTCGCGAGGACAGGGACGGGAGTGAACATGGCAGCAATCGCAGCACCCTGCGGAGAAACCCATTTGAGCCTTCCCACAGCGGGAAGTCCAGAGAGGACTCTCTGAAGAGCAGGATGTTCTCCTTGAAGAGGTCCCACAGTTACGACCACTCGCACGACCAGGGGGAAAACGCAAACGGGGGTCCAGCAGAGAAGCTGGAGAACTCGACCACTGAGTCGTCTCTTCTCGACACCTTGATGGGCAGAAAGTCTGCGAAGAAAAATTCAGAGGTGGCGAAAGTTGAGCCAGCTGAATCGGCAGAGTCGGTGCCGCTAGTGTGCAAGTCTGCAAGTGCACACAATCTAGCGGCAGACAAGAAACCTGTGCATCTTCGGACCTCGATGCTGCAGAAGTCTCTGAGCGTCATTGCCAGCGCCAGGGAGAGGACACTCGGGCTCGCGGGGAAGACCCACAGTGTTGAAGATGCCAGCAAAAAAGGTCTCAAAGCTCGAGACACCAGGATGCTCTCAGAAGTAGATGAATCACCGGAATGTTTCCCGAAGATGATCATCAGCCAATCGGTCGAGTACACCAAGACCCCAAGCAAAATGGGCATCATGAAGCAGCAAGTAAGCGGCAGTCAACCTTCCATTTGCTCTGAACCAGGAAGGAGCAGGGACCTGTACGACCTTTCCGAAGTTTGCCCATGGGAAATGGAAGATCTGCCCACTCCATCAGAGGGGAAATCTCAAAAGCATGTCTCCATTGCACCAAGTGAGACCAACACAATCCACGGGACCAGCTACAAAAGTGGACGGTCTCAGCACAAACAGAAGACctccgtccagtctccgtcaaaCCGCCGCCGCTCTAGAGACAAGGGCAGCTCAAAGGAGGAAGAGTGCGACGCTAGAAGAGAGCATGAAGGTAGAAAACTCAAGTCACCTTTAAAACTAACCGCCCACAAAGCAGAAACATGCCCTTGGGAATATGAAGATCCAGCAGCTGCTAAAGGACTGGAACCCGAGAGGATCAACCGCAAGAAAAGCGTCACTCCCACAGACGGAAATCCCAAGATCCTCCTCTCAGACCTCTCCAAGTCCACAGGAAGTCTTCTGCAGCCCCCAGCACTCATGGTGGAGATCTGCCCTTGGGACTATGACCAACCTCCTTCCCCATCCAACCAGGAGAAGACCTCAAGCCCCACTCACTACTCTAAAAGAAGGGACTCGAACGCCAAGCGGAAAGGTTCCTGCTCATCGAGAGGCAAAGGGAAAGACAAAGACGAGGATAAACAGAGGTCCAAAAGCAGAGAGCGAAGAAGCTCTTCGAGCAAACCTTCAGAGAAACGTCGCATCAGCCAAACATCAGACAGCAGCCAGGTTTCCATGACAGGATCTGGCAGAAGAAGAAGCTCCACTAAGGAGCTGGGAATCACTGACAGCAGTAAGCATGCAGAAGCTTGCCCTTGGGAAACGGAGGTCGTGCCAAGTGTCATCTCAAAAGACAAGCAGTCATCATCCCGGGGCAACCACACCACTTCCCAAACCCCAACAGCAGCATCGGCACCACCTGCTGCTACTGCAGCACCAGCGGCCAGTAAACTCAGTACGGCTGACGTGTGTCCGTGGGATTTCGAGGACAAGTCATTAGGGAACCGTGCATGACACGTTTACTCACATCCAATCTTTTTTGGGGAAAAAGAACTGTTGATTTTtactcactgtaaaaaaaaactgtttcaaAACTGGCTTCCTGAGACAACTAACGATAACATGGAACGTGGAAGTTCCATCTGAGGAATGCCTTACGTCAActcttgtttgtttgattaaggaatttttaaagcacaaatcacctaaaatcatttaaaaacttaaaaatctcaaatatgtttgtttttttgtttttaggaaCATGTTGCATCCTGGGGATTTGAAATCACAGCCTAATTCACTGGCTCtttgtttacatgcactttaaGACACACAGATGGGGAAAATGTCCTGCTGGACGAATGGTCGAAAAGAGTTCAGAGCAACTTGAGATTGAGATttggaaagagttttaaaaattgatggttttatgtattttttaaaacacaggaaTCTGGGCTGCtgcctttttatgtttttatgataGGGCTGTTCAATTCCACAAATCTTTGAGCTGATTAGTAATTCTGATTCTGAGTCAAAGTGTTGAGAATTTATACATTTGGAGAAATTGATACATAGGATAGCAAGTCTGGTAAAATGTCAAGAAAACCaagaattaactttttttataaaatcacaTTCTTCACTTTTTGTAATTAAATTCTAAAGCTCAGCCCTAATTTAAGATTATCTTCTAATCTCAAATGTCTTCAACTCTTCAGTTCTTCAACTCAGGCCTTGATTCCAGTTTTTCTCGTTCACCAACAGTGATTATTAAATCAAGGACCACTTAAAGAACTGGATTCAGGGTGTTTAGGCTACATTTGCACAGCAAGAAAAAGTGCCCTAAAttccctatctggacaggattagtttctcagggggttctggggaaattttctcttttatgggattttttttatcctctg

Function

NR:

description
PREDICTED: probable G-protein coupled receptor 158 isoform X2

GO: NA

KEGG:

id description
K08469 GPR158; G protein-coupled receptor 158

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677788.1 True 5185 mRNA 0.52 11 2322038 2362870

Neighbor

gene id symbol gene type direction distance location
dpp6 LOC108430761,LOC108267703 coding upstream 91973 2102221 ~ 2230065 (+)
LOC103042278 NA coding upstream 407019 1869474 ~ 1915019 (+)
kdsr kdsr,LOC106569188,LOC102792240 coding upstream 461523 1855297 ~ 1860515 (+)
LOC103043726 LOC103043726,LOC105899208 coding upstream 504826 1810725 ~ 1817212 (+)
tsc22d2 NA coding upstream 519719 1777225 ~ 1802319 (+)
LOC103040438 pcyt1a,LOC103040438,LOC108430756,LOC108267677,LOC107709348,LOC107671662,LOC107727528 coding downstream 33087 2395957 ~ 2405369 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding downstream 60038 2422908 ~ 2431028 (+)
LOC103041271 LOC108430753 coding downstream 102461 2465331 ~ 2473513 (+)
tsen15 tsen15,LOC107681748 coding downstream 111191 2474061 ~ 2476180 (+)
LOC103042800 NA coding downstream 131094 2493964 ~ 2507127 (+)
G137960 NA non-coding upstream 29574 2289092 ~ 2292464 (+)
G137951 arhgap21b,LOC108267702 non-coding upstream 76377 2244516 ~ 2245661 (+)
G137943 LOC108430760 non-coding upstream 84348 2207367 ~ 2237690 (+)
G137930 NA non-coding upstream 293230 2025193 ~ 2028808 (+)
G137917 LOC108430762,LOC108267465 non-coding upstream 333572 1987814 ~ 1988466 (+)
G137972 NA non-coding downstream 23640 2386510 ~ 2480525 (+)
G137973 NA non-coding downstream 27323 2390193 ~ 2390812 (+)
G137975 NA non-coding downstream 31126 2393996 ~ 2394911 (+)
G137977 NA non-coding downstream 37687 2400557 ~ 2400842 (+)
G137978 NA non-coding downstream 44386 2407256 ~ 2408538 (+)
G137929 NA other upstream 297652 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 470725 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 822082 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1282068 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1333400 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 537605 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 719186 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 752550 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1438983 3801853 ~ 3839372 (+)
G138701 NA other downstream 1470385 3833255 ~ 3834460 (+)

Expression


Co-expression Network