LOC111194265


Basic Information

Item Value
gene id LOC111194265
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2562135 ~ 2564047 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677802.1
GTGGATCTTACACGCAGGTCGGTGGGTCATCTGTTATCTGTCTTGAGCAAAAACAGCCTCATTTAGAGAGTCATGGAAAACCATCCCGCACGTCAACAGCATGCGAATCACGCTGGATCCAGTATAAAAGAATGTATGGACGCTGTGGGTTCTAAAGACTCCCAGAAACCCCCGGACATCACAGGACAGGTGGGCAGCTCTCAGGTGCTTAAAGAAAGTCTCCAAATATGAAGACCCTGCTCTTGGCTTTGCTGTTGGTGTGTGCTCTGTGTCCAGACACCGCCCGCTCCCACAATGCCGTCCGGCTGTGTGGCCGTGAGTTTCTGCGGGCTGTGGTCTACACCTGCGGAGGGTCCAGGTGGAGGAGGGTCCTGTCTGAGTCTTCGGCAGAGGACTCTGATGTGGATGGCGGACAGGATCTGGGGTTCACCACAGACACAATATCTAAGAGGCTAAGAAGGAGTCAGGAcaatctgattcagaaatgcTGTGATACGGGCTGCTTAAAACACGAACTGGCCCTCGTCTGCTGAGGAGGAAGATGAAGGAGATAAAGGAGGCTCATCATTTAATTGGAAAGAAGAAAAGCAGGACATTTCTCACAATGTTgccttttaaaatgtattaaagacCTTATAACCTAAACTGCAGGTGGCAGACATGTGATTAACCTCTAGAGGCCAAGACCTTTACTTGGTGTGCATTTTAAATTTTTCTGAGCTATTTGGGATTAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677802.1 True 735 mRNA 0.49 2 2562135 2564047

Neighbor

gene id symbol gene type direction distance location
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 31972 2522508 ~ 2530163 (+)
LOC103042800 NA coding upstream 55008 2493964 ~ 2507127 (+)
tsen15 tsen15,LOC107681748 coding upstream 85955 2474061 ~ 2476180 (+)
LOC103041271 LOC108430753 coding upstream 88622 2465331 ~ 2473513 (+)
LOC103040954 anxa13,anxa13l,LOC103040954,LOC107727547,LOC108267681,LOC107559374 coding upstream 131107 2422908 ~ 2431028 (+)
LOC103044323 LOC108430700 coding downstream 25470 2589517 ~ 2593691 (+)
LOC103044144 LOC108430743 coding downstream 125239 2689286 ~ 2711716 (+)
LOC103044744 NA coding downstream 183771 2747818 ~ 2763344 (+)
LOC111194192 NA coding downstream 356672 2920719 ~ 2922118 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 379089 2943136 ~ 2978445 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding upstream 71008 2489424 ~ 2491127 (+)
G137982 ap2m1,LOC108430755 non-coding upstream 142104 2415925 ~ 2420031 (+)
G137978 NA non-coding upstream 153597 2407256 ~ 2408538 (+)
G137977 NA non-coding upstream 161293 2400557 ~ 2400842 (+)
G137975 NA non-coding upstream 167224 2393996 ~ 2394911 (+)
G138015 NA non-coding downstream 3992 2568039 ~ 2578880 (+)
G138026 NA non-coding downstream 43933 2607980 ~ 2609042 (+)
G138029 NA non-coding downstream 90929 2654976 ~ 2713458 (+)
G138043 NA non-coding downstream 92155 2656202 ~ 2733018 (+)
G138030 NA non-coding downstream 116072 2680119 ~ 2749252 (+)
G137929 NA other upstream 537749 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 710822 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1062179 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1522165 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1573497 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 336428 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 518009 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 551373 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1237806 3801853 ~ 3839372 (+)
G138701 NA other downstream 1269208 3833255 ~ 3834460 (+)

Expression


Co-expression Network