LOC103044144 (LOC108430743)


Basic Information

Item Value
gene id LOC103044144
gene name LOC108430743
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2689286 ~ 2711716 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677810.1
GCCCTCACACCATTTACGAGAAGAACTGCTGCCCTGAGTTAGGAGGAAGTCTAATATCTCACAGTGTTGTTATGGGTCCTGCAGTCAGAACAGCAGAtactaaaatcactaaaatgaaGATTTAAATTTTAAGAAAGAAAAGCTCTTTGTGGAAAACAGATTCTCACTGAGTGAGCAGAACTTTCCCGGTTATTTTTGGAGATGGAGTTTGGCAGGCAGGTcttggagaagctgcagagaaagaagaagatgtCCTCCACGATGCCGCTCACCCTGCAGGGTCTCGAGGTCCATTTTTACCTGCCAGATACGCATCAGATCATCCACCTCAAAGGCAGCTTTTCAGCAGAGGAGCTGTGCATCGATGCGGCCAAGAAGTTGGGTGTGTCTCCACTCTGCAGCACTCTGTTTGCTCTGTATAATGAAGTCAGCCTCACCTGGTTCCCTCCCAATTACTCTTTTGTGATAGACGAGTCTACGAGACTGAAGCTACATTATCGGATGAGGTTCTACTTCAGTAACTGGCATGGCACTGATAAGGATTCTCCAGCTGTACTGAGACACGCTCTCAAACGCTCGAGCAGCCAAGAAACGGCTGTTCTGGACCTGCCCTCTCTGACCTACCTCTACGCACAGAGCCAGTACGACTTTCAGAGCGGCCTAGCTCCACTACGAAGCCCCCAGTCTGAGGAAGACACCCAGCAGATAGAGAACGAGTGTTTGGGAATGGCTGTAATGGCGATTTCCCATGATGCCATGGGCAGCCAAATGCCCACACGGGAACTTACCAGGATATTCAAGTACAAGAACTACATCCCGCTCAGTTTCAGGCAGGACATCGCTCAGAGGAACATCTTTACCCGCATGCGCATCGCCAACGTCTTCAAGGCCTTCCTGGAGGAGTTTAACGACAGAACCATCCAGAACAGCAGTGTCAGCAAACACTACCTGAAGGTCAAGTACATTTCCACCCTGGAGAACCTCACCGAGCGCTTCGGATGCGAAGTGTTCCAGCCGTCCCTGCTGATCATTCACGAGAACGAGGACGGCGCCTCGGGGTTCGGGGATAAAGGTGCCAGGCATCGCGTGCTGGTGTCTGGAACGGGCGGCATTAAGTGGCAGAAAGTGCCGGTTGAGACCCTCCCAGATCCATGGAGCAACCCACAGAGGAGGATGTCTATGAGGAGTAGAAGACAGCAGAGTCAGCAGAGCTCCGGCCCGAAACATCCCACCAAACATGACGTCTGGACGACTTTCTCCAATTTTTCTGAGATTACGCACATCGTCATCAGAGACTCTACAGTCACAGTTTACAAACAAGACGACAAAAGAATgGAAGTGCACCTGGCTGCGCGTGAGGAGGCTCTCTCCTTCGCCAGTCTGATAGACGGGTACTTCAGGCTCACGGTAGATGCGCATCACTTCCTGTGCACAGATGTTGCACCAGTTTCTGTGCAGACAAATGTGAGCGAGGGATGTCACGGTCCAATCAGcactgaaTACGCCACTCACAAACTGAAGCAGGAGGGTTACGAGGAGGGCATGTACATCCTGCGCTGGAGCTGCGCCGACTTCGACCACGTCCTGCTTACGGTCATCTGCAAAGAGAGGGACAACTCTGGAGGGATCCTGAAAACCTTTAAGAACCTACAGATCCAGAAGCTGGAGAGCGGCTATCGTCTGTGTGGGACGGATACAGAGAAGCCGACTCTCAGAGAGCTGACCGATCAGCTGTCTGGACAGCGTCTGAGTACAGAGAGCATCGTACTGACTCTAGACAGAGGCTGCCCACCTCAACCCAACGAGGTATCTAACCTGCTGATGGTGACGCGCCCAGACACAGCTGCCCCGTCCTCTCTCAGCCAGGGGATCACAGTTTTCCACAGGATCAACAAGGAGGACATCATTCAGGATAAGCATCTGGGTAAAGGAACTCGCACCAACATCTACTCCGGCAGACTGAAGATCCGCAGCTACGATGACGACGGTCTCTCAGGACTCCAGAGGACTGAGGAGGTGAAGGTGGTCCTGAAGGTTCTGGGAGCAGGACACAGGGACATTTCAGCCTTCCTCGAGACGGTCAGCCTGATGCGtcacatcacacacaaacacatggctCTGCTTTATGGCATCTGTATGCACAGCATGGACGTTATTATGGTGGAGGAGTTTGTGCAGCATGGTCCTCTGGATTTGTTCATGCGAGCTCATCGTGCTGATCTCACCCCATCCTGGAAGTTCCAAGTAGCAGAGCAGCTTGCAAGTGTCCTCAGTTACCTGGAGGATTCGAAGCTTGTGCATGGGTTTGTGTGCACTAAGAACATCCTGTTGGCTAAGGACGGTCTGGAAGGACAAGGAGCTCCTTTCATAAAGCTGAGTGACCCTGGCGTGCCCATCACTGTGCTCAGCAGAGAAGAATGTATTGATAGGATTCCCTGGATTGCGCCAGAGTGTGTGAAGAACCCCAAAGCGCTCAGTGTTGCAGTGGATAAGTGGGGATTTGGAACTGCATTGTGGGAAATCTGCCACAATGGGGAGGCGCCACTCCGGGACAAGCAGCGCACTGAGAAAGAGCGCTTCTATGAAGCTGAAGGCGCGCTGGTGATCCCCAACAGTAGTGAGCTGGCCGACCTGATCACTCACTGCATGAACTATGACCCCAGGAAGAGACCTTTCTTCAGAGCTATTGTTCGAGAGCTGGACCGCATCAAAGAGCAGAACCCGTCCGTGGTGTCGGGGGTCATTCCCCTGCAGGAGACGGACCCCTCCGTGTTCGAGAGCAGATTTCTCCAGACAATACGCAAACTGGGAGAGGGTCACTTCGGGAAGGTGGAGCTGTGCATGTATGATCCTCAGGGGGGTCACACAGGCCAGCTGGTGGCTGTGAAATCTCTGAAGTCAGAAAGAGACGGCCTGGAGAGCAGCAACCTCAGAAGAGAGGTCAACACCATGAGGGAGCTCTACCACCAGAACATCGTCAAATACAAAGGCATCTGTAATGAAGAAGGTGGACGGACTATAAAGCTGATTATGGAATATCTACCTGCTGGAAGCCTGAAGGAATATCTGCCCAGGAACAGAGCAAATACCAGCGAGCACAGACTGCTCCTTTACGCTCTGCAGATATGTCAGGGAATGGAGTACCTGGGTTCTCAGAACTACATCCACAGGGATCTGGCTGCACGGAACGTTTTGATGGAGAGCGAGACGCTGGTGAAGATTGGTGACTTTGGCCTAACCAAAAGCATCAAAGACAATGAGGAATATTACACCGTGCGGGAGGATCAGGACAGTCCTGTTTACTGGTACGCCCCTGAGTGCCTGATCCACCGCAAGTTCTACAAGGCCTCAGACGTCTGGTCTTTCGGGGTCACGCTCTATGAGCTGATGACCTACTGTGAACGCAAGAGCTACCCTCCAGATATGTTCCAGAACATGATTGGTCGATCACACGGTCAGATGACCATGGCGAGGTTGGTGAAGGCTCTGGAGGAAGGCCGGAGgttgccatgtcctccatcctGCCCGGATGTGGTGTACACGCAGATGCGGCGGTGCTGGGGCTACTCCCCCGAGGACAGGGTGGACTTCAAAAGCCTGATCGAGGTGTTCGAGCGTCTGCTGTCCACAGAGGAACTCAGCCTAGCTCGCAGCTGCTGA
>XM_022677811.1
ATGGAGTTTGGCAGGCAGGTcttggagaagctgcagagaaagaagaagatgtCCTCCACGATGCCGCTCACCCTGCAGGGTCTCGAGGTCCATTTTTACCTGCCAGATACGCATCAGATCATCCACCTCAAAGGCAGCTTTTCAGCAGAGGAGCTGTGCATCGATGCGGCCAAGAAGTTGGGTGTGTCTCCACTCTGCAGCACTCTGTTTGCTCTGTATAATGAAGTCAGCCTCACCTGGTTCCCTCCCAATTACTCTTTTGTGATAGACGAGTCTACGAGACTGAAGCTACATTATCGGATGAGGTTCTACTTCAGTAACTGGCATGGCACTGATAAGGATTCTCCAGCTGTACTGAGACACGCTCTCAAACGCTCGAGCAGCCAAGAAACGGCTGTTCTGGACCTGCCCTCTCTGACCTACCTCTACGCACAGAGCCAGTACGACTTTCAGAGCGGCCTAGCTCCACTACGAAGCCCCCAGTCTGAGGAAGACACCCAGCAGATAGAGAACGAGTGTTTGGGAATGGCTGTAATGGCGATTTCCCATGATGCCATGGGCAGCCAAATGCCCACACGGGAACTTACCAGGATATTCAAGTACAAGAACTACATCCCGCTCAGTTTCAGGCAGGACATCGCTCAGAGGAACATCTTTACCCGCATGCGCATCGCCAACGTCTTCAAGGCCTTCCTGGAGGAGTTTAACGACAGAACCATCCAGAACAGCAGTGTCAGCAAACACTACCTGAAGGTCAAGTACATTTCCACCCTGGAGAACCTCACCGAGCGCTTCGGATGCGAAGTGTTCCAGCCGTCCCTGCTGATCATTCACGAGAACGAGGACGGCGCCTCGGGGTTCGGGGATAAAGGTGCCAGGCATCGCGTGCTGGTGTCTGGAACGGGCGGCATTAAGTGGCAGAAAGTGCCGGTTGAGACCCTCCCAGATCCATGGAGCAACCCACAGAGGAGGATGTCTATGAGGAGTAGAAGACAGCAGAGTCAGCAGAGCTCCGGCCCGAAACATCCCACCAAACATGACGTCTGGACGACTTTCTCCAATTTTTCTGAGATTACGCACATCGTCATCAGAGACTCTACAGTCACAGTTTACAAACAAGACGACAAAAGAATgGAAGTGCACCTGGCTGCGCGTGAGGAGGCTCTCTCCTTCGCCAGTCTGATAGACGGGTACTTCAGGCTCACGGTAGATGCGCATCACTTCCTGTGCACAGATGTTGCACCAGTTTCTGTGCAGACAAATGTGAGCGAGGGATGTCACGGTCCAATCAGcactgaaTACGCCACTCACAAACTGAAGCAGGAGGGTTACGAGGAGGGCATGTACATCCTGCGCTGGAGCTGCGCCGACTTCGACCACGTCCTGCTTACGGTCATCTGCAAAGAGAGGGACAACTCTGGAGGGATCCTGAAAACCTTTAAGAACCTACAGATCCAGAAGCTGGAGAGCGGCTATCGTCTGTGTGGGACGGATACAGAGAAGCCGACTCTCAGAGAGCTGACCGATCAGCTGTCTGGACAGCGTCTGAGTACAGAGAGCATCGTACTGACTCTAGACAGAGGCTGCCCACCTCAACCCAACGAGGTATCTAACCTGCTGATGGTGACGCGCCCAGACACAGCTGCCCCGTCCTCTCTCAGCCAGGGGATCACAGTTTTCCACAGGATCAACAAGGAGGACATCATTCAGGATAAGCATCTGGGTAAAGGAACTCGCACCAACATCTACTCCGGCAGACTGAAGATCCGCAGCTACGATGACGACGGTCTCTCAGGACTCCAGAGGACTGAGGAGGTGAAGGTGGTCCTGAAGGTTCTGGGAGCAGGACACAGGGACATTTCAGCCTTCCTCGAGACGGTCAGCCTGATGCGtcacatcacacacaaacacatggctCTGCTTTATGGCATCTGTATGCACAGCATGGACGTTATTATGGTGGAGGAGTTTGTGCAGCATGGTCCTCTGGATTTGTTCATGCGAGCTCATCGTGCTGATCTCACCCCATCCTGGAAGTTCCAAGTAGCAGAGCAGCTTGCAAGTGTCCTCAGTTACCTGGAGGATTCGAAGCTTGTGCATGGGTTTGTGTGCACTAAGAACATCCTGTTGGCTAAGGACGGTCTGGAAGGACAAGGAGCTCCTTTCATAAAGCTGAGTGACCCTGGCGTGCCCATCACTGTGCTCAGCAGAGAAGAATGTATTGATAGGATTCCCTGGATTGCGCCAGAGTGTGTGAAGAACCCCAAAGCGCTCAGTGTTGCAGTGGATAAGTGGGGATTTGGAACTGCATTGTGGGAAATCTGCCACAATGGGGAGGCGCCACTCCGGGACAAGCAGCGCACTGAGAAAGAGCGCTTCTATGAAGCTGAAGGCGCGCTGGTGATCCCCAACAGTAGTGAGCTGGCCGACCTGATCACTCACTGCATGAACTATGACCCCAGGAAGAGACCTTTCTTCAGAGCTATTGTTCGAGAGCTGGACCGCATCAAAGAGCAGAACCCGTCCGTGGTGTCGGGGGTCATTCCCCTGCAGGAGACGGACCCCTCCGTGTTCGAGAGCAGATTTCTCCAGACAATACGCAAACTGGGAGAGGGTCACTTCGGGAAGGTGGAGCTGTGCATGTATGATCCTCAGGGGGGTCACACAGGCCAGCTGGTGGCTGTGAAATCTCTGAAGTCAGAAAGAGACGGCCTGGAGAGCAGCAACCTCAGAAGAGAGGTCAACACCATGAGGGAGCTCTACCACCAGAACATCGTCAAATACAAAGGCATCTGTAATGAAGAAGGTGGACGGACTATAAAGCTGATTATGGAATATCTACCTGCTGGAAGCCTGAAGGAATATCTGCCCAGGAACAGAGCAAATACCAGCGAGCACAGACTGCTCCTTTACGCTCTGCAGATATGTCAGGGAATGGAGTACCTGGGTTCTCAGAACTACATCCACAGGGATCTGGCTGCACGGAACGTTTTGATGGAGAGCGAGACGCTGGTGAAGATTGGTGACTTTGGCCTAACCAAAAGCATCAAAGACAATGAGGAATATTACACCGTGCGGGAGGATCAGGACAGTCCTGTTTACTGGTACGCCCCTGAGTGCCTGATCCACCGCAAGTTCTACAAGGCCTCAGACGTCTGGTCTTTCGGGGTCACGCTCTATGAGCTGATGACCTACTGTGAACGCAAGAGCTACCCTCCAGATATGTTCCAGAACATGATTGGTCGATCACACGGTCAGATGACCATGGCGAGGTTGGTGAAGGCTCTGGAGGAAGGCCGGAGgttgccatgtcctccatcctGCCCGGATGTGGTGTACACGCAGATGCGGCGGTGCTGGGGCTACTCCCCCGAGGACAGGGTGGACTTCAAAAGCCTGATCGAGGTGTTCGAGCGTCTGCTGTCCACAGAGGAACTCAGCCTAGCTCGCAGCTGCTGAGGCTTTCAACCCGGAGCTGGAGAGTTTCACACTACAAAGTGAAATCTGCCCGGTCAGGAACATCTGGGTGCTCctattatacagtacaggccaaaagtttggacacaccttcttttttttcagtgcgtttcctatattattttcatg

Function

NR:

description
PREDICTED: tyrosine-protein kinase JAK1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677810.1 True 3660 mRNA 0.53 24 2689286 2711569
XM_022677811.1 False 3606 mRNA 0.53 23 2690941 2711716

Neighbor

gene id symbol gene type direction distance location
LOC103044323 LOC108430700 coding upstream 95595 2589517 ~ 2593691 (+)
LOC111194265 NA coding upstream 125239 2562135 ~ 2564047 (+)
cmpk1 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 coding upstream 159123 2522508 ~ 2530163 (+)
LOC103042800 NA coding upstream 182159 2493964 ~ 2507127 (+)
tsen15 tsen15,LOC107681748 coding upstream 213106 2474061 ~ 2476180 (+)
LOC103044744 NA coding downstream 36102 2747818 ~ 2763344 (+)
LOC111194192 NA coding downstream 209003 2920719 ~ 2922118 (+)
slc1a7 slc1a7,slc1a7a,LOC107722044,LOC107671767,LOC107681716,LOC107593788 coding downstream 231420 2943136 ~ 2978445 (+)
aldh9a1 aldh9a1,LOC108430735,LOC108267615,LOC107681718,LOC107593789,LOC105891333 coding downstream 305864 3017580 ~ 3025513 (+)
LOC103024543 fzr1b,LOC108430732,LOC108268046,LOC107719268,LOC107701330,LOC107722096 coding downstream 326703 3038419 ~ 3049776 (+)
G138026 NA non-coding upstream 80244 2607980 ~ 2609042 (+)
G138015 NA non-coding upstream 110406 2568039 ~ 2578880 (+)
G137999 imp3,LOC107709332,LOC107671714 non-coding upstream 198159 2489424 ~ 2491127 (+)
G137982 ap2m1,LOC108430755 non-coding upstream 269255 2415925 ~ 2420031 (+)
G137978 NA non-coding upstream 280748 2407256 ~ 2408538 (+)
G138058 lrp8 non-coding downstream 53604 2765320 ~ 2768924 (+)
G138073 NA non-coding downstream 135841 2847557 ~ 2849112 (+)
G138074 NA non-coding downstream 151246 2862962 ~ 2863288 (+)
G138078 NA non-coding downstream 180927 2892643 ~ 2895410 (+)
G138080 NA non-coding downstream 185814 2897530 ~ 2899531 (+)
G137929 NA other upstream 664900 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 837973 1835477 ~ 1851313 (+)
G137826 LOC108430781,LOC108267757 other upstream 1189330 1491816 ~ 1499956 (+)
mrps14 mrps14 other upstream 1649316 1037861 ~ 1039970 (+)
G137756 kiaa0040 other upstream 1700648 980980 ~ 988638 (+)
LOC103045052 cfap57,LOC106594647 other downstream 188759 2900475 ~ 2936129 (+)
LOC103024858 NA other downstream 370340 3082056 ~ 3084865 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other downstream 403704 3115420 ~ 3119488 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 1090137 3801853 ~ 3839372 (+)
G138701 NA other downstream 1121539 3833255 ~ 3834460 (+)

Expression


Co-expression Network