st6galnac3 (st6galnac3,LOC107599847,LOC107681790,LOC107558185)


Basic Information

Item Value
gene id st6galnac3
gene name st6galnac3,LOC107599847,LOC107681790,LOC107558185
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3210560 ~ 3289693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677831.1
AAGCGgagcttttttttagtaaatggaAAGCGAGGCTGAATAACGGGAGGGAGATTATAGACCGAAAACGGAAAATGTCTCGTATTTTCGGACCTTTTGCGGTTCCGACGGAAACACGAGTGACCTTGCCGTGTTCTGTTCCCTAAACCGAGCCGCGCGGACCGAACCGCCCCGGTTAGAATGGCCTGGATGTGGAAGAAGAAGTCTGTGATTTTGACCGGCCTGGTCGTGGCCCTGTCTCTCTTCGTGGTGGTGGTGAATTACTCAGAGAAGCCCTACTTCCTCCTGCAGCCCGTGCTGGGGCAGAGCTTCAGCAGCCGCTGGATGTTCTCGAGGCAGCCTCACAAGACCTTCCGACCCCACCCCGGCTACATCAGCATCCCCAAACAGGAGCCGCTGAAGCTGCACTGTGACGTGTGCAGCGTGGTGTCCAGTTCGGGGCAGATGCTGAGCCGGCAGGCGGGGCGTGAGATCGAGCGCTCGTCCTGCGTGTGGCGGATGAACAACGCCCCCACCCGCGGCTTCGAGACGGACGTGGGCCGCCGCACCGACCTGCGGGTGGTGTCTCACACCAGCGTCCCGCTGCTGCTCCAGAAGCCCCAGCACTTCTTCGGGGAGGGGAACGAGACGGTGTACGTGGTGTGGGGGCCGCTGCGCAACATGAGGGAGGACGGCAAGGGCATCGTCTACAACATGCTGCGCCAGGCCACCGAAAACTACCCCCACGCCCGCATCTACGTCACCACGGAGGAGCGCATGAACTACTGCGACACAGTCTTCAAGAAGGAGACGGGGAAAGACagGATCCAGTCTGGGTCGTACCTGAGCACCGGTTGGTTCACGCTTATCCTGGCGATGGACATGTGCAAGGAGATCCGGGTGTACGGGATGATCAACGACACGTACTGCAAAACTGAAGGCTACAGGAAGGTGCCGTACCACTACTACGAAGCCGGGAGCAGAGACGAGTGCGCTGAGTACCTCCTGCACGAGAGCGCCCCCTACGGTGGCCACCGCTTCATAACGGAGAAGGCTGTTTTCGCCAAGTGGGCCAAGACCCACCCCATCAAGTTCTTCTACCCAGAGTGGCAGCTGTCGTGACCGGTGGAGGGCGGTGGCTTCTCCTGGTCATCGGACCCGTACACTCCCTCTGTCTTAATgaatgcacagaaaaaaaaacacgtagTAACCAAGCAGATGATCTGTGATCTGTAGACGATGATCTATATGATATCTGTTTATCTGCCCTCTGTTTAAAGAGAGACTCGCTGTATTTTCTCTGGTGTTGATTGAATAACTAATCACGATGAGATTTATCATCACGTGTTCTTAGTGACATTCATTTCAGGACAATCGAGTAGcgaaaacagaaaacaggaaaaacagaaaaaacagatcTGTATCTACGAGGGTGCCTATGCTTCATAGACCACCATTGGGAAGTTTCTCGTTCCTAGTCTTTCGTTCTCTGTTATCTGTGGTTCTAGACAGGAGATGATGTCATCTAACATTTGTAGAAACCAAGAAAGGACACAGTGTTGAAGAAAACAGATCTGACAGTGATGAAGTGTAATATGAGCTGCTGATTACCTTCCATCAGATTGATCACACCTCGAGCAGCAGATGAAGGTTGGAAGGGGACTTTATTCATTTAGCCTAAATGGGTCTGAACACAGTTTATCTTGGGAAAGTGGGTTGGAGTCAACCTTGCGCATGAATCTAATCTTAAGCAGCTCAGGATCCGGATCCCCTTCAACCTGACTTACAaactgtttaaactgcagaaactATACAAAAGCTTCCCGTTCACACATGACCTTTTCATCAGAGTTTGTCTATCGGTAATCAAACAGGAAGAAGTTACGCTTGAGGAGCCAAAATCCTGTTAGATCAGACTTCCTcacattctgtattctgtacttGACTCAGAAATGAATGATCATTTTTGcctttcctttaattttccatgTGAGGATGTCACATAATTGCATAGTTGCAttcagtacaggccaaaagttctctttttcaatgcgatttctttattttcatgactgtttcatgaattttt

Function

symbol description
st6galnac3 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; heart; and intestine. Orthologous to human ST6GALNAC3 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3).

NR:

description
PREDICTED: proteoglycan 4-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008373 sialyltransferase activity molecular_function

KEGG:

id description
K03373 SIAT7C, ST6GalNAc III; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677831.1 True 2068 mRNA 0.51 5 3210560 3289693

Neighbor

gene id symbol gene type direction distance location
cope cope,LOC107690966 coding upstream 10475 3194548 ~ 3200085 (+)
LOC103046575 LOC108430689 coding upstream 17005 3187732 ~ 3193555 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding upstream 54506 3150876 ~ 3156054 (+)
LOC107197652 NA coding upstream 60780 3147247 ~ 3149780 (+)
LOC103026425 zgc:153615,LOC103026425,LOC108430722,LOC107691014,LOC107747506,LOC107599852,LOC107708656,LOC107681829 coding upstream 67613 3127745 ~ 3142947 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding downstream 21468 3311161 ~ 3361634 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding downstream 127733 3417426 ~ 3477561 (+)
miga1 miga1,LOC107558173 coding downstream 246724 3536417 ~ 3552555 (+)
fubp1 fubp1 coding downstream 265236 3554929 ~ 3568678 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding downstream 281450 3571143 ~ 3581126 (+)
G138524 gipc2,LOC108430720 non-coding upstream 35196 3156756 ~ 3175364 (+)
G138123 NA non-coding upstream 95945 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 213483 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 311029 2897530 ~ 2899531 (+)
G138078 NA non-coding upstream 315150 2892643 ~ 2895410 (+)
G138598 NA non-coding downstream 203003 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 214883 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 234938 3524631 ~ 3526308 (+)
G138642 NA non-coding downstream 294325 3584018 ~ 3584290 (+)
G138647 NA non-coding downstream 312162 3601855 ~ 3602193 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 91072 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 125695 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 274431 2900475 ~ 2936129 (+)
G137929 NA other upstream 1186174 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1359247 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 512160 3801853 ~ 3839372 (+)
G138701 NA other downstream 543562 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 806304 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 876250 4165943 ~ 4172010 (+)
G138839 NA other downstream 947916 4237609 ~ 4245864 (+)

Expression


Co-expression Network