st6galnac5 (st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846)


Basic Information

Item Value
gene id st6galnac5
gene name st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3311161 ~ 3361634 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677832.1
atctcTCACATACACGttcgctctctctcgcgctctctctctcacacacacacgcgcgcgctcACGCTTTAATCTGGCGGAGGAGAGGGAGCAGGCGAGTGGAGCGCGCGCTGCAGACGAGGATGGGAGCCCTTCTGTCCACATAATCTCATGCAGCGCTCGAGCGTCGAGGACAAGAAGTGTAACCTGCACGCGCCGACCTGCAGCTGTGCACCATGAGGACAGCCATGcGCCATGGAGCTGCTGTGTTTCTGGCCATCTCCATGTGCACCAGCTTATTCTTCGTCTACAACGTGAATAACAGCGACGGGGGGAGATCCAGCGACGGGTCGGCCCAGACGGTGAAGCCCACCAAAGCTCCAGCCAGACCCCGGCCGGCTCCTCCAGCCCTGCAGGGATACACCAGCATCATCGACCACAGCCCTCTGAAGATGCACTGTGGAAGTTGTGCGCTGGTCACCAGCTCTGGTCACCTGACAGGTGGAGGGCGGGGCCAGGAAATCGACCAGGCGGAGTGCGTCATCCGAATGAACGATGCTCCCACCGGCCGAGGCTTTGGGCTGGATGTGGGTCACCGCACCAGCCTGCGGGTGATCGCTCACTCCAGCATGCAGCGGGTCCTGCGCAGCCGCCATGAGCTTCTCAACTCCAGCCAGGACACTGTCTTCATATTCTGGGGTCCCAGCAACTACATGCGGCGAGACGGGAAGGGACTGGTCTACAACAACCTGCGGCTGATGAACCAGGTGCTGCCCAAGCTCAAGGTCTACATTATCTCCTGGCAGAAGATGCTGCAGTTCGACGACCTCTTTAAGAGAGAGACGGGCAAAGACAGGAAGATATCTAACTCCTGGTTGAGCACGGGATGGTTCACCATGACCATAGCGCTGGAGCTGTGTGACCGAATCAATGTTTACGGCATGGTGCCTCCAGACTTCTGCAAGGAAGCTCAACGTCCCTCCGTTCCGTATCACTACTACGAGCCTCTGGGACCAGACGAATGTGCCATGTACATCTCCCATGAGCGCGGGAGGCGGGGCAGCCATCACCGCTTCATCACTGAGAAACGTGTCTTTGCTAACTGGGCGAGGACTTACAACATCCATTTCTACCAGCCGGACTGGAGTCCGCCACCCCTGCCCAAAAACACCACTGGAACTACAGCTCAGTCACGGAGAACGTGACTCTAAAGAGGACGTCTTATTAAAAGGAGCACGGAGAACACTGGCTGAAGTTAAAGTGGCTGAAAAGTGCTCTGCTCAGGAACTGGTAGGTCCTGGGAAGCAATTCTCGCGCTGTGCCTCGGACAGCTCTGAGCCGGACGCCTTTCCCTTTTCggcacttttttttcatattggaATAAATGGGATGATCAGAGAATCACATGCTCAAAAGGAGATAAAAAAGCATGTGATTGTCCGCTCTGCGCTATTAAAGAACATAAACAGTAAGAGAAGCAATTACTGATACCTTAAAGTAAGGTCAGTTATGGTCAGCACTTCCTTACATGcttatacagtatactgtacacTTAACTGatggagttccacagggttctgTCTGAGGACCACTGCAGGTTTGGCCAAACACAGATACCCACAGATACCCAGCATGTGTAGAAGACTGTGTAGAAGCAAAGCCCAGGACAGAATATGTCAAAAGCCAaaatctggatgggattagtttctcagggggtcttgGAGTCattttctctgtgattttattcctgtccagaacgac

Function

symbol description
st6galnac5a Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide metabolic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in brain; gill; intestine; and testis. Orthologous to human ST6GALNAC5 (ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5).
st6galnac5 Predicted to enable alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity. Predicted to be involved in ganglioside biosynthetic process and oligosaccharide biosynthetic process. Predicted to be located in Golgi membrane.

NR:

description
PREDICTED: alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0001665 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity molecular_function

KEGG:

id description
K03375 SIAT7E, ST6GalNAc V; N-acetylgalactosaminide alpha-2,6-sialyltransferase (sialyltransferase 7E)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677832.1 True 1740 mRNA 0.54 5 3311161 3361634

Neighbor

gene id symbol gene type direction distance location
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding upstream 21468 3210560 ~ 3289693 (+)
cope cope,LOC107690966 coding upstream 111076 3194548 ~ 3200085 (+)
LOC103046575 LOC108430689 coding upstream 117606 3187732 ~ 3193555 (+)
txndc12 txndc12,LOC107690994,LOC107566463,LOC107708672 coding upstream 155107 3150876 ~ 3156054 (+)
LOC107197652 NA coding upstream 161381 3147247 ~ 3149780 (+)
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding downstream 55792 3417426 ~ 3477561 (+)
miga1 miga1,LOC107558173 coding downstream 174783 3536417 ~ 3552555 (+)
fubp1 fubp1 coding downstream 193295 3554929 ~ 3568678 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding downstream 209509 3571143 ~ 3581126 (+)
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding downstream 223515 3585149 ~ 3598602 (+)
G138534 NA non-coding upstream 14779 3256901 ~ 3296382 (+)
G138524 gipc2,LOC108430720 non-coding upstream 135797 3156756 ~ 3175364 (+)
G138123 NA non-coding upstream 196546 3110402 ~ 3114615 (+)
G138092 NA non-coding upstream 314084 2996554 ~ 2997077 (+)
G138080 NA non-coding upstream 411630 2897530 ~ 2899531 (+)
G138598 NA non-coding downstream 131062 3492696 ~ 3494363 (+)
G138593 NA non-coding downstream 142942 3504576 ~ 3506945 (+)
G138609 NA non-coding downstream 162997 3524631 ~ 3526308 (+)
G138642 NA non-coding downstream 222384 3584018 ~ 3584290 (+)
G138647 NA non-coding downstream 240221 3601855 ~ 3602193 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 191673 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 226296 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 375032 2900475 ~ 2936129 (+)
G137929 NA other upstream 1286775 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1459848 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 440219 3801853 ~ 3839372 (+)
G138701 NA other downstream 471621 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 734363 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 804309 4165943 ~ 4172010 (+)
G138839 NA other downstream 875975 4237609 ~ 4245864 (+)

Expression


Co-expression Network