miga1 (miga1,LOC107558173)


Basic Information

Item Value
gene id miga1
gene name miga1,LOC107558173
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3536417 ~ 3552555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677837.1
CAGCCCAGTCTCCGTCCTCCCCACGTTCTGCTCGTGTCTGAGCTCAGACCGGAGAGATGGATCACGAAGCGCATAAACGCTGACACCTATGAATGAAAATGGGCCCTAGCTGAGGTGATGTGATTATGGCACAATGGCAGAAGACGTGCTCCGAAACTCCCAGCTGTCCTTGAAGCTGGCTGCCCTGCGTGTGGTGGACCTGCCTCTGGCTGTCTTTTCCTCACTCCCACGGGTAAGCCTGAGCTCCGGCACCAAGAAGCTGGTTGCCGCCACAGCCTTCGGCGCCGTCTCGCTCGCCCTCCTCGCCCGACACTTCAAGAGGAGAAAAGGCAGGAAGAAAAGCCAGTCGCCCAGAGAGCAGGAGGCCTTCGATTTCCTCTCCACACTTCCCAAACCAAAAGATGTCTACGGCAGTCGGCAGAACCTGACTTTGTCTCTGAATACGAAGAACAGCTTCTCCAGCCTTGCGGTGCCTAATGGCAGCTTGTACAGCAAGCTCTCCGGCTCCCTGCAGAGTCTGGCCTCGGTGAAGAGCATGAACTCCTGCAGTAGCTGCACGTGTCCTAATGGATCCAGCTGCTGGGACAGAGCAGAGGAAGGCGAGCTCCGGAGCATCATCCCTGTCAGCACTCCAGAGAACCTCTACCTGATGGGCGTGGAGCTGTTTGAGGAGGCTCTGCGTCGTTGGGAGCAGGCGCTCACGTTTCGTGGCCGGCTGGCGGAGGACGAGACCAGCTGCGCTTCAGTTAAACTGGGGGCTGGAGATGCCATAGCAGAGGAAAGTGTTGAGGATATCATCAGTGCAGAATTCATCCACAAGCTGGAGTCTCTGCTGCAGAGGGCCTATCGCCTCCAGGAGGAGTTTGAGGGAGCGCTGGGGATGTCCGACCATTCCTCACATCCCAGCAACGagaaacacactgacGTCTCGGCGAGGGAGGATTTGGACGACTCGTGTTTGAGGGACTCTGTCAGCATCGCCTCCACCGACTCCTTTGTGTCTGCAGCAGAGCTGTCTGAACACAGGGATATGAGGAATGCCTTTGGTCTCGGCTCGCTCTGCCACTACCCCTTCTATGAAGAAGCTCTGCAGATGGCCGAGGATGGCAAGATCTCCTGTAGAGTCCTCCGAACGGAGATGCTCGAATGTCTTGGGGACACTGATTTCCTGGCGAAGCTGCACTGCATTCGCCAGGCCTGTCAGgtcATTCTATGTGAAAGAGCAACTAGGATGTTTCTGGCTGACACAGGAAAGAAGATCTTGTCCTCTATAATCGTTAAAGCGAGGAAGAGCCCCAAGAGGTTCGAGGAGGTTTTTGAGGACATGATCTGTTTCCTGGAGCAGACGGATCACTGGGAGAACACGGAGGCAGAACTGGCAACCAGAGGGGTTAAGCATTTGAATTTCTATGACATCGTTTTGGACTTCATCCTGATGGATTCCTTCGAAGATTTGGAGAATCCTCCTATCTCCATCCAGAATGTGGTTAATAATCGCTGGCTCAACGCCTCTTTCAAAGAGACAGCTGTCGCATCAAGTTGCTGGTCTGTTCTGAAGCAGAAAAGACAACATATGAAGGTGCAGGATGGCTTCATCGCTCACTTCTACACGGTGTGTGAACACATCAGCCCTGTGTTGGCGTGGGGATTTCTGGGTCCTAAGAGTCCCCTGCATGACTTCTGCTGTTTCTTTAAGGACCAGGTCCTGTTCTTCCTGAAGGACATATTTGACCTGGAGAATGTGCGCTACTCCAGTGTAGAAACCCTCGCTGAGGATATCCTCCACCTGCTGCACCGTCGCTCCGAGCTGCTGCTGGCCTACCTGGGGGCTGATTCTCTTCGGCACGTCAGTGGCTGCGTAGGATCCCCGCTTCACCTGGTGTCCACCGCCATGCTGGAGACCCGGGTTCAATAAGCTCACGCCCGTGTCTTTACGCTCGTGATGTCCTGCAGTGCAGTCTTGCTTGTGACAGAGTCGTATCGGCTCACGTGTCTGGGTAACTCGCGCGCCCGTGTCCGTCCGTGTGAAGTTGATGTATGAGTTCTGCTGTACCAAGCAGTAGCAGGATGTTGATAATGTCCTTGTTTTCAGGACATTTTCAGGATAGTGGTAAATGATTGAGAGCAATAGGCTGGACGATTATGACTGTTTTCTATGTGCTGCTCGAATGAGCACTGAAATTAGCATTGACACGCACTTCAcacacaatttactgtacaagttatttatttaattggtctgttttactattttaagtattaaaacctttttgttttgtttttttttgtttttttgctttctgcTTAGTGAATGTTAAAATGGTTTCAATTTGTCTTAAACCTTTGGCTTGAAAAAGTTTTTACCTGTATTATGAATTGTTCTCATtttatacagtacagtgtgCTGTAGTATGTAAAATGTGCTTCACATTCTTTATAACTTGCTGTCAAATGTTCAACTGGAAACTGACGCCATGGTAAATTGTTCAATCTATTGTTTTTGTGATGTGGGAAAAAATTTCATTTGCACATATAAGCCCATTCACAATAATAATTCTAAAGCCCTttccagatgggattagtttctcaggggctCCTGAggacattttatcttttatgggggtcctcatatatgtgtttttctcagacgtcctctgagaagaTTACAGGttaaattatctactgtttttctctaaactccgtggtcctccagtaattttagtcccgtccagacgcACATCTGAGTTTCGGTtcctcgtgtttaataaaatagctatttgtccacggccgcgcaccataattacacgtTGGGCacacgtttccacagagatccacgtaaaaacacacaaaagcgagtggaaatggaggagctactgaacgctgtgatgtcatgtgactgagaaagccaaaaactcactggtcctcctgttttttcaattgcagtctggatgcaggacttttattactgagtagaaggtcccccctgagaaactaatcctgtactgggataaaaataaaaagaaaaggttgGGAAAAGATTATGTAAACCCACCTGTATGGTTATGAAGTAATATCgggtaaaaaattaaaataggaAAATTTAAGATAAAATGGATATGgatcatttaaaatgattgCTAAATCACATAAAAGACACATAAGGGCAGAATGAGATTAGATCTGGgttactattatatatttttttttctcatttttcatttttaacactAAGTTTAACTCTAAACTTAAGATTTATCATGTAAAATCCAACTCATAACAGAAAGCAGCTTACTGATAAGCCTTCACACACAAGCCCAAAGCTGCAGACGTTCACAAGACATAAGCTGATCATCTTCTTTATTACTGTAAACTCTTAAGCCATATACTGTATGGAACTCTTCTCTCATTTGTTACACAGTGGCATTACCAcccagctagcattagcatatGTTTGTACAAGGCTGTTGTTAATGTTCCATATTGATCATTTAACAGATTGTATGAGCCTTAATGTTAGTGCATGTGTGGTGGCCCAAATGCGCAAAAGTAACCAGTGGGTTTTCTTTTActtggaatttttttttgtggtccaTTTGTGTTAATATGTACACAGCAGAGTGGCTGTAGCAGCCTGTGTGTTAGcaaaatgctaaagctaaatatTTGTACTAGAAAAATGGACTTGTTTTTGTCAAGTTCTTAAAGAAAACTGTTTTTTCTGTACTGTGTTTAATTGTGAGCTGTACAAATAAatgagcaaataaaaaaatgtgaaaacta
>XM_022677839.1
CAGCCCAGTCTCCGTCCTCCCCACGTTCTGCTCGTGTCTGAGCTCAGACCGGAGAGATGGATCACGAAGCGCATAAACGCTGACACCTATGAATGAAAATGGGCCCTAGCTGAGGTGATGTGATTATGGCACAATGGCAGAAGACGTGCTCCGAAACTCCCAGCTGTCCTTGAAGCTGGCTGCCCTGCGTGTGGTGGACCTGCCTCTGGCTGTCTTTTCCTCACTCCCACGGGTAAGCCTGAGCTCCGGCACCAAGAAGCTGGTTGCCGCCACAGCCTTCGGCGCCGTCTCGCTCGCCCTCCTCGCCCGACACTTCAAGAGGAGAAAAGGCAGGAAGAAAAGCCAGTCGCCCAGAGAGCAGGAGGCCTTCGATTTCCTCTCCACACTTCCCAAACCAAAAGATGTCTACGGCAGTCGGCAGAACCTGACTTTGTCTCTGAATACGAAGAACAGCTTCTCCAGCCTTGCGGTGCCTAATGGCAGCTTGTACAGCAAGCTCTCCGGCTCCCTGCAGAGTCTGGCCTCGGTGAAGAGCATGAACTCCTGCAGTAGCTGCACGTGTCCTAATGGATCCAGCTGCTGGGACAGAGCAGAGGAAGGCGAGCTCCGGAGCATCATCCCTGTCAGCACTCCAGAGAACCTCTACCTGATGGGCGTGGAGCTGTTTGAGGAGGCTCTGCGTCGTTGGGAGCAGGCGCTCACGTTTCGTGGCCGGCTGGCGGAGGACGAGACCAGCTGCGCTTCAGTTAAACTGGGGGCTGGAGATGCCATAGCAGAGGAAAGTGTTGAGGATATCATCAGTGCAGAATTCATCCACAAGCTGGAGTCTCTGCTGCAGAGGGCCTATCGCCTCCAGGAGGAGTTTGAGGGAGCGCTGGGGATGTCCGACCATTCCTCACATCCCAGCAACGagaaacacactgacGTCTCGGCGAGGGAGGATTTGGACGACTCGTGTTTGAGGGACTCTGTCAGCATCGCCTCCACCGACTCCTTTGTGTCTGCAGCAGAGCTGTCTGAACACAGGGATATGAGGAATGCCTTTGGTCTCGGCTCGCTCTGCCACTACCCCTTCTATGAAGAAGCTCTGCAGATGGCCGAGGATGGCAAGATCTCCTGTAGAGTCCTCCGAACGGAGATGCTCGAATGTCTTGGGGACACTGATTTCCTGGCGAAGCTGCACTGCATTCGCCAGGCCTGTCAGgtcATTCTATGTGAAAGAGCAACTAGGATGTTTCTGGCTGACACAGGAAAGAAGATCTTGTCCTCTATAATCGTTAAAGCGAGGAAGAGCCCCAAGAGGTTCGAGGAGGTTTTTGAGGACATGATCTGTTTCCTGGAGCAGACGGATCACTGGGAGAACACGGAGGCAGAACTGGCAACCAGAGGGGTTAAGCATTTGAATTTCTATGACATCGTTTTGGACTTCATCCTGATGGATTCCTTCGAAGATTTGGAGAATCCTCCTATCTCCATCCAGAATGTGGTTAATAATCGCTGGCTCAACGCCTCTTTCAAAGAGACAGCTGTCGCATCAAGTTGCTGGTCTGTTCTGAAGCAGAAAAGACAACATATGAAGGTGCAGGATGGCTTCATCGCTCACTTCTACACGGTGTGTGAACACATCAGCCCTGTGTTGGCGTGGGGATTTCTGGGTCCTAAGAGTCCCCTGCATGACTTCTGCTGTTTCTTTAAGGACCAGGTCCTGTTCTTCCTGAAGGACATATTTGACCTGGAGAATGTGCGCTACTCCAGTGTAGAAACCCTCGCTGAGGATATCCTCCACCTGCTGCACCGTCGCTCCGAGCTGCTGCTGGCCTACCTGGGGGCTGATTCTCTTCGGCACGTCAGTGGCTGCGTAGGATCCCCGCTTCACCTGGTGTCCACCGCCATGCTGGAGACCCGGGTTCAATAAGCTCACGCCCGTGTCTTTACGCTCGTGATGTCCTGCAGTAGTGGTAAATGATTGAGAGCAATAGGCTGGACGATTATGACTGTTTTCTATGTGCTGCTCGAATGAGCACTGAAATTAGCATTGACACGCACTTCAcacacaatttactgtacaagttatttatttaattggtctgttttactattttaagtattaaaacctttttgttttgtttttttttgtttttttgctttctgcTTAGTGAATGTTAAAATGGTTTCAATTTGTCTTAAACCTTTGGCTTGAAAAAGTTTTTACCTGTATTATGAATTGTTCTCATtttatacagtacagtgtgCTGTAGTATGTAAAATGTGCTTCACATTCTTTATAACTTGCTGTCAAATGTTCAACTGGAAACTGACGCCATGGTAAATTGTTCAATCTATTGTTTTTGTGATGTGGGAAAAAATTTCATTTGCACATATAAGCCCATTCACAATAATAATTCTAAAGCCCTttccagatgggattagtttctcaggggctCCTGAggacattttatcttttatgggggtcctcatatatgtgtttttctcagacgtcctctgagaagaTTACAGGttaaattatctactgtttttctctaaactccgtggtcctccagtaattttagtcccgtccagacgcACATCTGAGTTTCGGTtcctcgtgtttaataaaatagctatttgtccacggccgcgcaccataattacacgtTGGGCacacgtttccacagagatccacgtaaaaacacacaaaagcgagtggaaatggaggagctactgaacgctgtgatgtcatgtgactgagaaagccaaaaactcactggtcctcctgttttttcaattgcagtctggatgcaggacttttattactgagtagaaggtcccccctgagaaactaatcctgtactgggataaaaataaaaagaaaaggttgGGAAAAGATTATGTAAACCCACCTGTATGGTTATGAAGTAATATCgggtaaaaaattaaaataggaAAATTTAAGATAAAATGGATATGgatcatttaaaatgattgCTAAATCACATAAAAGACACATAAGGGCAGAATGAGATTAGATCTGGgttactattatatatttttttttctcatttttcatttttaacactAAGTTTAACTCTAAACTTAAGATTTATCATGTAAAATCCAACTCATAACAGAAAGCAGCTTACTGATAAGCCTTCACACACAAGCCCAAAGCTGCAGACGTTCACAAGACATAAGCTGATCATCTTCTTTATTACTGTAAACTCTTAAGCCATATACTGTATGGAACTCTTCTCTCATTTGTTACACAGTGGCATTACCAcccagctagcattagcatatGTTTGTACAAGGCTGTTGTTAATGTTCCATATTGATCATTTAACAGATTGTATGAGCCTTAATGTTAGTGCATGTGTGGTGGCCCAAATGCGCAAAAGTAACCAGTGGGTTTTCTTTTActtggaatttttttttgtggtccaTTTGTGTTAATATGTACACAGCAGAGTGGCTGTAGCAGCCTGTGTGTTAGcaaaatgctaaagctaaatatTTGTACTAGAAAAATGGACTTGTTTTTGTCAAGTTCTTAAAGAAAACTGTTTTTTCTGTACTGTGTTTAATTGTGAGCTGTACAAATAAatgagcaaataaaaaaatgtgaaaacta

Function

symbol description
miga1 Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in mitochondrial fusion. Predicted to be integral component of plasma membrane. Orthologous to human MIGA1 (mitoguardin 1).

NR:

description
mitoguardin 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677837.1 True 3780 mRNA 0.46 16 3536417 3552555
XM_022677839.1 False 3628 mRNA 0.46 17 3536417 3552555

Neighbor

gene id symbol gene type direction distance location
ak5 ak5,LOC107703241,LOC107599844,LOC107681791 coding upstream 58856 3417426 ~ 3477561 (+)
st6galnac5 st6galnac5,st6galnac5a,LOC107708707,LOC107681827,LOC107599846 coding upstream 174783 3311161 ~ 3361634 (+)
st6galnac3 st6galnac3,LOC107599847,LOC107681790,LOC107558185 coding upstream 246724 3210560 ~ 3289693 (+)
cope cope,LOC107690966 coding upstream 336332 3194548 ~ 3200085 (+)
LOC103046575 LOC108430689 coding upstream 342862 3187732 ~ 3193555 (+)
fubp1 fubp1 coding downstream 2374 3554929 ~ 3568678 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding downstream 18588 3571143 ~ 3581126 (+)
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding downstream 32594 3585149 ~ 3598602 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding downstream 348599 3901154 ~ 3942480 (+)
LOC103021527 NA coding downstream 443387 3995942 ~ 4002916 (+)
G138609 NA non-coding upstream 10109 3524631 ~ 3526308 (+)
G138593 NA non-coding upstream 29472 3504576 ~ 3506945 (+)
G138598 NA non-coding upstream 42054 3492696 ~ 3494363 (+)
G138534 NA non-coding upstream 240035 3256901 ~ 3296382 (+)
G138524 gipc2,LOC108430720 non-coding upstream 361053 3156756 ~ 3175364 (+)
G138642 NA non-coding downstream 31463 3584018 ~ 3584290 (+)
G138647 NA non-coding downstream 49300 3601855 ~ 3602193 (+)
G138658 NA non-coding downstream 58638 3611193 ~ 3611402 (+)
G138661 NA non-coding downstream 111221 3663776 ~ 3664008 (+)
G138663 NA non-coding downstream 116807 3669362 ~ 3669576 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 416929 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 451552 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 600288 2900475 ~ 2936129 (+)
G137929 NA other upstream 1512031 2022755 ~ 2024386 (+)
LOC103042893 vps4b,LOC107727524,LOC107681797,LOC107710065 other upstream 1685104 1835477 ~ 1851313 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other downstream 249298 3801853 ~ 3839372 (+)
G138701 NA other downstream 280700 3833255 ~ 3834460 (+)
LOC111194271 NA other downstream 543442 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 613388 4165943 ~ 4172010 (+)
G138839 NA other downstream 685054 4237609 ~ 4245864 (+)

Expression


Co-expression Network