LOC103021527


Basic Information

Item Value
gene id LOC103021527
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3995942 ~ 4002916 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677843.1
TCAATGCAATTAATCAAATTTAGTGCTTGAAATGAACTTTTCCCATTTCTTACCTCAGTCCAAACAGATGCTGTCAGGTGATCTGAAAATGCTGAAATTTGAAGTGGACGTTTCTGATAAAATAACCTAAAGTGTAAAATCCTAATAAGTCTAAAGTAAGCAAACCTACTAGACAGATAACTGTGTAGGTAGAGGATGATCTGAAATCTGAATAAACTACCAGTTGTAATAATGGTCCCATTGGGCATAATTACTTCCTAGCCTGGCTGGGGCTGTTCCTATAGAAACCCCTGCCTGTAATACTTAACCCAGGCGAAAACAGGCCGCTCCCAAAGTGCCCTCCTTGGCACTACACGGCGTGTGAACTGGAGACGGCCAGGAACCACATCGCTTCTCTTAGTTTGGTGCTCCAATCTGTCCTGGGTCGGCTGGGGTCAAGCAAGCATGCTCCTGAACTCGTCCCCTCGAGGATCCTTCAGCGTGCCCGTTCACATCAACCTGCACAACGCTCGGCGGAGGCGGACACGGGATCTGATGCAATCCCCCAACAGTTCTCAgtggaaaagaggcagagctggAGAGAAGACCAAGAGTCAGGCTCCTGTATCCAGCGTGGGAGAGGAGAGAGCTCTGCTTTTGGGATTCACCATGATTGCATTCTCCATCCTCATGTACTTCGTGGTGGGAATTGTTGTTGTCAAGCCAAGTTTCCAGAGTGACTGGGGAGAGGCCACCAACTGCTCACTGATCCAGGTTGACCTCTTAATGGGCTTGAACAGCTTCCCATGTCTGCAGGTCTTCGTGAACATTACAGCTGTGGACAAAAGAGCACGTCTGCATTACGATGAAGTAGTGGTGAACCTGAACCCTgagTGTTTCTACACCCCTAAAAGCCAGCAGAACAAGTCCGAGCAGGTGGAAGAGGCCCAGAACATAAAGGACTTCTTGGCAAGCAAACAAGGGCAAGTGATGAAGTGCCACCCCAGCATGGGTAGGCACCCTGAAGACGTGATCATGAAAAAGAGATACACCCGGCCTCTGGCGCTCCAGTGCATGGTGTGGCCCAGCCTCATGCTGATTGGAGGATGCCTGCTGGTCGGATTGGTGAAGCTCACCCAGTGCCTGGCTCACCTTTGCACTGAAATCGACACCAGAGAGGGCTGCGCGGAGGGGGGTCagaccacacagacacagggcaAACTTTACCACCTGCTCAGGTGCAGGCCGGGGAGTCCCAGCATGGAGCAGGACCCGGGCAGCTAGCGTTCCATTACTGTCTGGTACGTGTGAAGACATGGCATTTGGCTGTTGTCAGATGTTAGAGATGCTGGTTTAAAGGCAGGAGACAAAAGGAAATGTGTCAGGACGTATCATGCAATGCTTTATTTATTGGAAAAGgtttacagaaaatgaggaaaTGTGTAGAGGCATCACTGAAGAGGCGTTACTCTAAGACAGAGGTCAGCAATAGGTGACTCGCAGGCCACCagataatgaacgataatgaaaaaaatttaaataaaatgctagGCGTGACTTTATTTCTGCCCTTTCTCATTTTTCCGCCCTTTCTttggctccctatctccttataagggcattttccCCTGGCCGTgtctcaattcactagccagggcagcgatAAGGTATTGGAACGCAACCCTGATAACAAGGGTTCGATCTCCCGTGAGgagagatcaactgttctgcaattgggttcaacaaccctctgggctggagagctactaacTTAATTTTCAACCCCTTCTCTAAGAGTTATCTATGTCAGTTTCTAAAACAAGGCGGTTAAACACAGCTAGATTAAACAGCTTTTCTATGTCTATAGCTATGTGATGCCAATCGCCACATAGCTTGCAGTTTAGGCATTAGGCAAGAGAGTACAGCTTGAGACCAGCTTGTGGCAGTATACCTCAAACAATGAAACAAGGTACAACAGGAACCAAGCTTCTTCCAATTCTGCAAgactcaaaaaatatatatatttatggggaaaaaaactatGAGGACAAGAAGGCTTAGCTAGCTTTTAGGTAGCAAGCAACAAACCTGAGTTTGGTTAAGAACTACTGGCTAGTTCTAAATGCTAATGAACAGAAACTAAAAAAGAATGACCAACCTACAGCGTCTTAAAAGATGTCAGAGAAATAAATAGCATTCTGATTTTGCTCTATATTTGCCTGAAAGTTCATAATTATGCATAGAATATGTTAGCTAAGTCTTCAATCTTAAAATCTGTAGCACTAGCTAACCATTTTACATTAAGGGCTCTTGAATTCAAGACACtctactagggctgcacgatactggaaaaaaaaaattacattgcaaattttatttttttgactaCATACCAGCCCCTTAACAATGCAGCATTCAGGCAGTCTTGCGTAGGCACATGCATGGATTTAAGGGGATTCTGTGGAGTCTAATCTACAGGATGTTACATAGCATTTAAAAGAGACTTTTAGTACGCTATATTGCCAAAAGCATTAGCGTTATGATGGTTTCAAGTgttctgggaaggctttccacCAGGTTTAGGaatgtgtttatgggaatttttgACCATTCTCACAGTCTCTGCTCTAATTCATCCCAAAGGTGTTCTATCGGTTTGAGATCAGTCTagttcttccacaccaaacttGCTCATCCATGTCTGTACGGTCCTCGCTTGGTGCACTAGTGCGCAGTAGTCATGTTTGAACAGGAAAGGGCCGTCTTTAAGCTGTTCTCGCAAAGTTGGGAgcatgaaattgtccaaaatctcttgATATGCTGAAGCATTAAGAGCTATTTCACTGGAattaacaagaaaaaacaaccccacataataatcataattatcccccctcaaccaaactttacacctggcacaatgcagtcagacaagtacTGTTCTCCTGGCAACCGCCAAAGAAACCCAGAAACCCAACCCTTTCCATGAAActaatctgaaggccacatAAAGCTTGGAGGTCAGTAGCAATTGATTCTGTAAAAAGTTGGTCACCTCTGCACGCTATTTTCCTAAACTGACCATTTATTAGGACATTTTTAATGGGTGGGTAaacacttttggcaatatagtgtagaTAATTTGACActatgtttagtttagttctctcAGTAAGAAATGATTGACTATAAACTATATACTCTATTTATTGTAGCTTATAGCTGGTAACGTCAGAAATGATTGTCTCAGAGACGGAGCATAACTAATACTGAGGTTAATCTGAATAGCTGCTTTTTTAAGCACTTGTGCAAGTGTTTTCCTTCCCTGTGAACCTCCCACATGTGGACACCCACAACCTCGTCGAGGAATAACGGCTGGTCTGGTTGTCTTGTCTACTCCACCGTTCCAGTTCCCAGTCTCTGAGGATTTATCAGACTCAGCATGTTGAGTTGAGTCCCTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677843.1 True 3441 mRNA 0.44 4 3995942 4002916

Neighbor

gene id symbol gene type direction distance location
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding upstream 53462 3901154 ~ 3942480 (+)
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 397340 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 414816 3571143 ~ 3581126 (+)
fubp1 fubp1 coding upstream 427264 3554929 ~ 3568678 (+)
miga1 miga1,LOC107558173 coding upstream 443387 3536417 ~ 3552555 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding downstream 19520 4022436 ~ 4046639 (+)
LOC103033521 b3gnt5 coding downstream 49814 4052730 ~ 4065474 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 72572 4075488 ~ 4080104 (+)
ccdc39 NA coding downstream 78096 4081012 ~ 4095442 (+)
LOC103022774 NA coding downstream 139180 4142096 ~ 4154519 (+)
G138731 NA non-coding upstream 88819 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 242532 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 262482 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 314012 3681726 ~ 3681930 (+)
G138663 NA non-coding upstream 326366 3669362 ~ 3669576 (+)
G138744 NA non-coding downstream 33455 4036371 ~ 4039858 (+)
G138747 NA non-coding downstream 65871 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 102064 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 169855 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 233753 4236669 ~ 4237527 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 156570 3801853 ~ 3839372 (+)
G138701 NA other upstream 161482 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 876454 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 911077 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 1059813 2900475 ~ 2936129 (+)
LOC111194271 NA other downstream 93081 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 163027 4165943 ~ 4172010 (+)
G138839 NA other downstream 234693 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 670464 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 700430 4703346 ~ 4708663 (+)

Expression


Co-expression Network