LOC103033521 (b3gnt5)


Basic Information

Item Value
gene id LOC103033521
gene name b3gnt5
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4052730 ~ 4065474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677844.1
tgtgagtgagtgagtgtcgGAGCGCGTGTTTATAATCTCGTGGAGCCGCTGAGTGGATGAGTTGAGGAGATTCAGTTTTTTACACGGAGGAACATTATCGCTGGAGGACTTTTCAGCAGGGTCGCGGTTCTTCTGCCTGTTGCTCTGAATGAGGTTTGAAATGGTCTTGGCCTGATGGAGCACCGAACTGAGAAGATCCGTAACCCAGGTCCGTGTCGTGTTTAGGGCCTGACTGTGGCTGAAGTTGTGGCTCAAAGTGTCCAGGATGGTTGTGAATTTCCGCCGGTTCAGGAAATGTCAAGTTCGACAGCTGATGATGACATGCTTCGTGATATCAGCAGTCATGGTGTACTGGGAAAGTAGTGACAGCAATTTAACAAATCATGTGAAGTCCTACTCGTTACGGCACCTGCTCAGCAGCCTCGACTTCATCAGTGCCAACCTGACGATTAGTCGAGGAGAGGCACGGAGGTTCAGTGACCACCAGTACTTGATAAACCACGAACAGAAGTGCACCAACAGGGATGTCCTGCTTCTGCTGTTTGTGAAAAGCTCGCCGGAGAACTTTGAGAGGAGGCAGGCCATTCGGTCAACGTGGGGCAATGAGGCCTACATTGAGAGGACCTTGGGCGTGAGTGTGAGAGTGGTTTTTGCACTTGGCCTTCACCCTTCTCCCTCGCAGAGAAAGAAACTGCAAGAGATGCTGCATCAGGAAGATGAGAAGTACAACGATTTGATCCAGCAGGACTTCCTCGATACTTTCCACAACCTAACCATCAAGTTACTCCTGCAGCTAGGCTGGACCCATGCATACTGTTCCAACGCCCAGTTCCTCATGTCTGCAGATGACGACATCTTCGTCCACATGCCCAACCTTATCCACTATTTGCAAGAGGTCAGGCGCTCTGGAGTGAAGGACTTCTGGGTTGGAAAGGTGCATCGAGGCGCTCCGCCCATTCGTAGGAAGGACAGCAAGTACTATGTGTCAGAAGAGATGTACCCCTGGTCAATGTACCCTGATTACACTCCTGGGGCCGGTTACGTTGTCTCGAAGGACGTGGCCGCCCGGGTCTACGAAGCTTCCCTCACTCTGAACGCCTCTCTTTACATCGATGACGTCTTCATGGGCATTTGCGCCAACGCGATGGGGATTTCTCCCCAAGAGCACGCCTTCTTTTCTGGAGAGGGCAGAGCCCCTTACCACCTTTGCATTTACAACCAGATGATGACTTCACACGGACACGTGAAGGACTTCCATGAACTCTGGAGACTTGCGACAGACCCCGAGGTGCAGAAAGTGTCTTTGGGGCTTTTAGGAAAGCTTTATTGCACTGTGGCTAAAATCAGACTCCTCTGTGTACCACAATTTCAGAACACCTATCCTTGCAGAGCAGCATTCTTATAATAGGACTTATAACAGGACTTTAGTATGAGGTCACCTGTTGCGTTCGCTCGCCCCCAGCATCTTCACACCTTTTTTCACACCttattttttgtagtatttatttgtgtaacTTAACAATATTTTGCGCCTTTATAGTTGAATAGTATAGAATAGTCCTATGAAACTACATTGCTTTTGTGAAAAGGTGTGGGGGTGTGTTTGGTATTGTGTGACAAGGCCTATTTATGGTGATTGACACGTAATACAAGTAAGACATGGGTTTTGATCATGAGCCCACCTGTTAAACCACCTCTTCCCAAATTGTTTTGagagcagctcaaaaagaagttATGAGGAGCACCCTGGACTTTGGACATTTTAGACAGTTACATAAAATGAGGCCTTTAAACTAGTAAACCATATTTCAACCCTTTCTATATTTTGAAAGaatctgttattt
>XM_022677845.1
GAATCATTTACGGCAAACTGAACTTGATTTAAAGATTTAGGGTCGTGTTTTGAATGGTTTTGAGTTTACACCTGAAACGAGATGCCTAGTTTTGAAACTGTAAACATGAGGACCTGCCTACTGGTCAGGGATTTCAAGGTTTGAAATGGTCTTGGCCTGATGGAGCACCGAACTGAGAAGATCCGTAACCCAGGTCCGTGTCGTGTTTAGGGCCTGACTGTGGCTGAAGTTGTGGCTCAAAGTGTCCAGGATGGTTGTGAATTTCCGCCGGTTCAGGAAATGTCAAGTTCGACAGCTGATGATGACATGCTTCGTGATATCAGCAGTCATGGTGTACTGGGAAAGTAGTGACAGCAATTTAACAAATCATGTGAAGTCCTACTCGTTACGGCACCTGCTCAGCAGCCTCGACTTCATCAGTGCCAACCTGACGATTAGTCGAGGAGAGGCACGGAGGTTCAGTGACCACCAGTACTTGATAAACCACGAACAGAAGTGCACCAACAGGGATGTCCTGCTTCTGCTGTTTGTGAAAAGCTCGCCGGAGAACTTTGAGAGGAGGCAGGCCATTCGGTCAACGTGGGGCAATGAGGCCTACATTGAGAGGACCTTGGGCGTGAGTGTGAGAGTGGTTTTTGCACTTGGCCTTCACCCTTCTCCCTCGCAGAGAAAGAAACTGCAAGAGATGCTGCATCAGGAAGATGAGAAGTACAACGATTTGATCCAGCAGGACTTCCTCGATACTTTCCACAACCTAACCATCAAGTTACTCCTGCAGCTAGGCTGGACCCATGCATACTGTTCCAACGCCCAGTTCCTCATGTCTGCAGATGACGACATCTTCGTCCACATGCCCAACCTTATCCACTATTTGCAAGAGGTCAGGCGCTCTGGAGTGAAGGACTTCTGGGTTGGAAAGGTGCATCGAGGCGCTCCGCCCATTCGTAGGAAGGACAGCAAGTACTATGTGTCAGAAGAGATGTACCCCTGGTCAATGTACCCTGATTACACTCCTGGGGCCGGTTACGTTGTCTCGAAGGACGTGGCCGCCCGGGTCTACGAAGCTTCCCTCACTCTGAACGCCTCTCTTTACATCGATGACGTCTTCATGGGCATTTGCGCCAACGCGATGGGGATTTCTCCCCAAGAGCACGCCTTCTTTTCTGGAGAGGGCAGAGCCCCTTACCACCTTTGCATTTACAACCAGATGATGACTTCACACGGACACGTGAAGGACTTCCATGAACTCTGGAGACTTGCGACAGACCCCGAGGTGCAGAAAGTGTCTTTGGGGCTTTTAGGAAAGCTTTATTGCACTGTGGCTAAAATCAGACTCCTCTGTGTACCACAATTTCAGAACACCTATCCTTGCAGAGCAGCATTCTTATAATAGGACTTATAACAGGACTTTAGTATGAGGTCACCTGTTGCGTTCGCTCGCCCCCAGCATCTTCACACCTTTTTTCACACCttattttttgtagtatttatttgtgtaacTTAACAATATTTTGCGCCTTTATAGTTGAATAGTATAGAATAGTCCTATGAAACTACATTGCTTTTGTGAAAAGGTGTGGGGGTGTGTTTGGTATTGTGTGACAAGGCCTATTTATGGTGATTGACACGTAATACAAGTAAGACATGGGTTTTGATCATGAGCCCACCTGTTAAACCACCTCTTCCCAAATTGTTTTGagagcagctcaaaaagaagttATGAGGAGCACCCTGGACTTTGGACATTTTAGACAGTTACATAAAATGAGGCCTTTAAACTAGTAAACCATATTTCAACCCTTTCTATATTTTGAAAGaatctgttattt

Function

symbol description
b3gnt5 Enables beta-galactosyl-N-acetylglucosaminylgalactosylglucosyl-ceramide beta-1,3-acetylglucosaminyltransferase activity. Involved in central nervous system development. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane.

NR:

description
PREDICTED: lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

GO: NA

KEGG:

id description
K03766 B3GNT5; beta-1,3-N-acetylglucosaminyltransferase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677844.1 True 1844 mRNA 0.48 2 4052730 4065474
XM_022677845.1 False 1829 mRNA 0.47 2 4060602 4065474

Neighbor

gene id symbol gene type direction distance location
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 6091 4022436 ~ 4046639 (+)
LOC103021527 NA coding upstream 49814 3995942 ~ 4002916 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding upstream 110250 3901154 ~ 3942480 (+)
LOC103030773 LOC103030773,LOC108437505,LOC108267627,LOC107558181 coding upstream 454128 3585149 ~ 3598602 (+)
LOC103030036 LOC103030036,LOC108437507,LOC107681832,LOC107709017 coding upstream 471604 3571143 ~ 3581126 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding downstream 10014 4075488 ~ 4080104 (+)
ccdc39 NA coding downstream 15538 4081012 ~ 4095442 (+)
LOC103022774 NA coding downstream 76622 4142096 ~ 4154519 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 242174 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 273609 4339083 ~ 4344329 (+)
G138744 NA non-coding upstream 12872 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 145607 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 299320 3720938 ~ 3753410 (+)
G138672 LOC105889432,LOC108437525,LOC108268022,LOC107722302,LOC107565821 non-coding upstream 319270 3732030 ~ 3733460 (+)
G138665 NA non-coding upstream 370800 3681726 ~ 3681930 (+)
G138747 NA non-coding downstream 3313 4068787 ~ 4072088 (+)
G138758 NA non-coding downstream 39506 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 107297 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 171195 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 285907 4351381 ~ 4353535 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 213358 3801853 ~ 3839372 (+)
G138701 NA other upstream 218270 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 933242 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 967865 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 1116601 2900475 ~ 2936129 (+)
LOC111194271 NA other downstream 30523 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 100469 4165943 ~ 4172010 (+)
G138839 NA other downstream 172135 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 607906 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 637872 4703346 ~ 4708663 (+)

Expression


Co-expression Network