Gene
RNA
| Item | Value |
|---|---|
| gene id | G41835 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000006 |
| NCBI id | null |
| chromosome length | 13024002 |
| location | 4241522 ~ 4256763 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU47492 | True | 1243 | lncRNA | 0.46 | 2 | 4241522 | 4256763 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000006_04145907_04147044 | SDF2 | coding | upstream | 92348 | 4145414 ~ 4149174 (+) |
| CI01000006_04124413_04127728 | RAB34 | coding | upstream | 113751 | 4124413 ~ 4127771 (+) |
| CI01000006_04107814_04117460 | TLCD1 | coding | upstream | 123860 | 4107814 ~ 4117662 (+) |
| CI01000006_04100433_04105606 | NIPAL4 | coding | upstream | 135905 | 4100062 ~ 4105617 (+) |
| CI01000006_04050327_04089669 | GRIA1B | coding | upstream | 150199 | 4048960 ~ 4091323 (+) |
| CI01000006_04257954_04258376 | NA | coding | downstream | 60 | 4256823 ~ 4258506 (+) |
| CI01000006_04268235_04268891 | CLDNC | coding | downstream | 8873 | 4265636 ~ 4269257 (+) |
| CI01000006_04272263_04272907 | CLDNH | coding | downstream | 15358 | 4272121 ~ 4273578 (+) |
| CI01000006_04284763_04290722 | ABHD11 | coding | downstream | 27573 | 4284336 ~ 4291717 (+) |
| CI01000006_04305974_04313072 | PHKG1A, PHKG1, PHKG1B | coding | downstream | 49167 | 4305930 ~ 4313251 (+) |
| G41823 | NA | non-coding | upstream | 12291 | 4228837 ~ 4229231 (+) |
| G41822 | NA | non-coding | upstream | 12730 | 4228434 ~ 4228792 (+) |
| G41777 | NA | non-coding | upstream | 51704 | 4189194 ~ 4189818 (+) |
| G41810 | NA | non-coding | upstream | 52977 | 4188320 ~ 4188545 (+) |
| G41808 | NA | non-coding | upstream | 58207 | 4183075 ~ 4183315 (+) |
| G41860 | NA | non-coding | downstream | 68809 | 4325572 ~ 4325809 (+) |
| CI01000006_04349756_04355615 | FIBPB, FIBP | non-coding | downstream | 95718 | 4349453 ~ 4357955 (+) |
| G41892 | NA | non-coding | downstream | 136951 | 4393714 ~ 4394213 (+) |
| G41904 | NA | non-coding | downstream | 198734 | 4455497 ~ 4456349 (+) |
| G41889 | NA | non-coding | downstream | 366258 | 4623021 ~ 4623252 (+) |
| CI01000006_03734862_03735227 | BANF1, BANF1.S, BANF1.L | other | upstream | 505544 | 3734554 ~ 3736035 (+) |
| G41591 | NA | other | upstream | 1402101 | 2836167 ~ 2839421 (+) |
| G41424 | NA | other | upstream | 1580952 | 2645662 ~ 2660570 (+) |
| G41170 | NA | other | upstream | 2545701 | 1692065 ~ 1695821 (+) |
| G40768 | NA | other | upstream | 3748496 | 488407 ~ 493026 (+) |
| G41996 | NA | other | downstream | 860443 | 5117206 ~ 5124149 (+) |
| G43896 | NA | other | downstream | 1513326 | 5770089 ~ 5771775 (+) |
| CI01000006_06104927_06109730 | NA | other | downstream | 1851721 | 6104927 ~ 6109820 (+) |
| CI01000006_06122278_06122736 | NA | other | downstream | 1865272 | 6122035 ~ 6122751 (+) |
| CI01000006_07167131_07168925 | NA | other | downstream | 2910026 | 7166778 ~ 7168925 (+) |
