ccdc39


Basic Information

Item Value
gene id ccdc39
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4081012 ~ 4095442 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677846.1
GCGGGCAGCGGGGCGCTCCCGTGCGGCCTGTCTGTCGCTAAGTAACGGGGAGAACAACAGTGATCCGGGAAGCTGAACACACAGTCCGGGTCTTTATCCCGCCGGAGAAAAAGCTTCATTTCTGTTACTCAGCTCTTATTCAGCTCATTTCTAccggagagagaggagaacatGGCCAGCGCGGTGCTGTCTGAAATAGCCTGGGACGACGGGTTCGCTATTCCCGTGGCTAATGCGAGAAATAAAGCCCTGGAGGAGGAGCTTCAAAGAAAACTGAAGAAGAAGGCGAACATTGAAAATGAACTAAGTCAGCATGAGGACAGAATATCTGCCATGACTGAACACATGAAGGACGTCAAACAGGAGCTCTCTCACACTCAGGCGCTCTGTATGGccagagaaaaagaggagaagtCTGAGATGCATTTTAAAGCCCTGGCGGAAAGGGAGATGGGACGCCTGCGGCAGGAGCTCGCTCAGCTGGAGAATGAACTGGGATCACTGCGAGAGAGGAAGAACACACGGGAGAACAACATCTTCAAGGCGACGCGTAGGATAGAAGAGCTGAAGAGTCGGCTGAACTGGGATCAGCAGGCTCTGGACACCTGGCTGGAGGAATCGGCACGCAAAGACGAAGACACCATGGCCATCATCAAATACGCGCATCAGGATGAGAGCAGAATCCGAGAACTGACTCTGAGCATCGAGAGACTGACCCAGGAGGCCAACCAGAAGAGAAAAACCTTAGACAACCAGCTAACAGAGACCATCATGACACAGGTCGCTGTGGATAAGACGACAGAGATATTCCGACAGGCTAATCTGGAGCGACAGGAGCTGATCCACCAGTGGGAGAACACCATCGAGCAGATGAGGAAGAGAGACCAGGAGATGCAGCAGTGTGCTTTGATGCTGGCAGAATCGAACCATGAGATCCGTGAACGGGAAGCACtgataaaggaaaaaaagaacttCCTGTCCGGCGAGGTGGAGAATAACAAGGAGTGTGAGAGGGAGATCACAATCGCCGAGCGACAATTCATCAGGcttcagcagcagcttcaggagCAGGAGAGCAGCCGGATGCGTGTGAAGGATGAGCTGGAGACTCTAAAGGGCACAGTGGACCGTGCCGCTACAGAGGTGGAATCTATGAGGTCTAAGTTAACCAGCGTGAAGAAGGACATCAGCAACAAAACTACCAAGCTGGAGGAGGCCTGGCTCCAGAACGCTGCTCTAGAGGAGAAGCTTCAGTTGGCGACAGAGGCGGCGCTCAGTGTGGAAGAGAGAGCAGAACAGATGGAGCAGATACTCTCAGACCAGGAGCTGCACCTCAAAgAGATTGATGCCCAGCTTAAACGGCAACGTGAGCTCCTGTTCAGGAAGAGTCAGGAACTGCAGACTCTGAGGGCAAAAGAGAAGAATGCCACGGCTGAACTCTCCGGCAGCCGGATGGCGCTCTCGAGCCTGGACAACCGCCTCAATAAACTGGACCAGAGCAGCCTCCAGCAAGAGGGGATCATGTACACTCAGGACTTCCAGATTCAGCTGCTGGAGAGGAAGATGGCTCACCTGCGCGGCGAGGTGAACACAGAGGAAAGGCAGGCTCTGGAGAAGCGAATCTCTGAACTGTCCAGTGCtctggaggagaagaaggagacaGCGGCCATGCTCGCCACTCAGTTGAAGAAGCTGCAGGATGACATCCGCTGCGTGAgcaaagagacagagaagacTGGAGCAGAAAAGAGAGACCTGACCACCAAGATTGAGGAGCTGACACGTTTCAGTGACACCATGGAGAAAGAGCTGAAGAAACTTCACCTCCAGAAGCAGGACAACATGATAGACAATAACATCCTGAGGATGGTGGTGAAGCGGCTGAGGGATCATCTGTACAGCGGGGCCGATGGAATGTTCTCTCTGGAGAAGAGGCAGCTGCAGCTACAGACGGCCATGAAGGAGCGGCAGGAGGAAATCCGCCTGCACAGAGAAATGCTCACCAAGCAGCTGAAGATCACTGATCAGGAAAGACAAGGACTCAGTGCTGAGGTTCATGAACGACTGTCTAAAATCGACAAGATAAAGAAGAGGTATGAGATCCTTATCACTGCTATGGCTCCtccagaaggagaagaagataAATCTCAGGCCTACTACATCATAAAGGCAGCTCAGGAGAGAGAGGAGCTTCAGAGAAAGGGGGATGAGCTGGATGCTCAGATTCggaagagtgagaaagagatcACGGCCATGGAGAACACCTTCCATGTTATCAATAACCGGAACGCCACGTATCGAAAATCCTCAAACAAGGTCACGGAGTCCAGTCCAGAGTATCAGGAGAAAATGAAGTTAGATGAACAGAAACGAGCAGCAGAGgagaaatataaacacaaaaggCGGCAAATCAGAGAACTACAGGAGGACATTCAGGGCATGAGCAGCTCACTGAACAGCCTTCTTCAGGAGGAATCTGCAGAGAAGAGAAGCAGCGATGACGTTGAAGCACGCATTCAGCTTCTGAACAAAGAACTTCATTCCCAGCAAGCGAAACTGGACAGAGTGACCAAACAGTGTTCCAAACTCACAAAGGAAATCCGCTCAGCGAAGAAGACCAAAGAGCAGACCTTCGAGGAGCGTGACATTGACCTAAAAGAACTGAAAGATCTAAACAGGACTGTGAATAAGATGCTTCTGGAGGTCATGGAGGAGCATCCTGATCTCCAGCCCATGTTACAGATGTACTTCATACAGGCCAGTCTGCCCCTCCCATCTCCTGGTTCCACTCCATCTAGTCGGAGTTCAAAATTAAGCTCAGCCCGAAGCTCTATTTCCCTGAGATCTCCAGGTTCATCAGTTGGCAGCAGCCCCAGAGGCTCAGCAGTTCAGTCTCCTGCTAAACAGACACTGGAACTGGGACTGGGACTGTCCGTGTCCTCCCCTCTGGTGGCCGGCACCTCTTCCAGAGCTTCCCGCAGTGGCAGCgccagtggcagcagcagtggcaggaGCAGCCAGCTTAAGAGTCCATAACTAATTTCTCCCTTTACCACAATAATACtgattttattcatataaatCTCATTTACTGTTCTGGTGTCTATATTTCACTTTAAATGCATTATACAGTTCTATATATGGAGAAGGCTTAAGCGATCTGACAAAACTGTTTAAAGATTTTAacgtttttgtgatttttttttttaatttgtgaaaaattaatattaaacagaaatcgacattaaaaatgattttaaagttGTTTGAAT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677846.1 True 3272 mRNA 0.50 20 4081012 4095442

Neighbor

gene id symbol gene type direction distance location
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 908 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 15538 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 34373 4022436 ~ 4046639 (+)
LOC103021527 NA coding upstream 78096 3995942 ~ 4002916 (+)
LOC103031935 ephb3a,LOC108437521,LOC108267069,LOC107656865,LOC107599837,LOC107681809,LOC107708817,LOC105889460 coding upstream 138532 3901154 ~ 3942480 (+)
LOC103022774 NA coding downstream 46654 4142096 ~ 4154519 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 212206 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 243641 4339083 ~ 4344329 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 290176 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 549559 4645001 ~ 4658142 (+)
G138747 NA non-coding upstream 8924 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 41154 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 173889 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 327602 3720938 ~ 3753410 (+)
G138758 NA non-coding downstream 9538 4104980 ~ 4114118 (+)
G138748 NA non-coding downstream 77329 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 141227 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 255939 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 259400 4354842 ~ 4355190 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 241640 3801853 ~ 3839372 (+)
G138701 NA other upstream 246552 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 961524 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 996147 3082056 ~ 3084865 (+)
LOC103045052 cfap57,LOC106594647 other upstream 1144883 2900475 ~ 2936129 (+)
LOC111194271 NA other downstream 555 4095997 ~ 4102241 (+)
LOC103023077 NA other downstream 70501 4165943 ~ 4172010 (+)
G138839 NA other downstream 142167 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 577938 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 607904 4703346 ~ 4708663 (+)

Expression


Co-expression Network