LOC103022774


Basic Information

Item Value
gene id LOC103022774
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4142096 ~ 4154519 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677853.1
GCTGATTTTGGAGCAACAATCTCTCCTATGAAACTCGTTTATAACGGGTATTTCACTCCTGCTCCTCAAAACACTGCGATTATCCTCCATATTTAATCTGCTGCTGCTGCAGTAATGGCCGGCCCATTTGTTCCAGTCCCCTACCCTGTAGAAAGATGTCCAGCTATCTGGCAGCTCAGACACGGGATCAGAAGGACCTCCAGCCTCAGCAATCTCTCCGTCAACTCGGACTCATCCCTCTCACAGAACGCCTGGGTGAAGCCAGGGCTGAGGAAGATGAACAGTTTGGACTGCAGAGCCAGTAGAGAGAGTCTGTATGAAAGACCACCCTTAGCCACCTTGGTGGGCTACGAGGTCATGGAGGAGAGGGCGAAGTTCACGGTCTATAAGGTACTGGTAAGCAGAGAGCCGGACGAGAGCTGGGTGATTTTCAGAGGATACACCGACTTCTGCAGACTCAATGATAAGcttAAGGAGGTGTTTCCCAAATTCAGACTTGCTCTGCCGCCCAAGCGCTGGTTCAAAGACAACTATGACATGAACTTTCTGGAGGAGAGACAGCTGGGTCTTCATGCGTTCCTCCAGAACCTGGTTGCTCACAAAGACGTCACTAACAGTGATGCAGTACGAGCATTTTTATGCCTGGATGACCCACCTGGTCCTTTCGACAGTCTGGAAGAGAGCAGGGCCTACTGTGAGACGCTAGAGGAGACCAACCATCGCCTGCAGAGGGAGCTGCTGGACAAACAGAGAGAACTCGATTCTTTGAGAACAATCCTGGAGGACCGACAGCTCCAAATCAGCAGATTGGAGAAAACAAAGAATGGCATCTGCAGTGGCCAGGAAGAGAGAAGTGAATTCCTGGCAGTGCATGTTGAGAGCAGTGTTGAGGCTGGTGTGAACGCAGAAGTCGACACAGAAGAGGCCTTTATAGCAGTAGAGATGGACTACACCATGACCCCGGACCGAAGTTTAGAGATCCAGTTGCCAAAGAGAGGCTATGGAGCTTGCTGGAGTGGACCATCGACTGAGAACCAAGAGTGTGCCTTCTTCCAAACATCTGAAGTTCTTGAAGACCAGGTTTAGACCACTAATGTCCACACTGACTGACTGGAGCTCTTactactgtctaactatagattTGATTtatacaatgtatttatttcaatGGAATTACACTATTAACCAGTTCACTTATAGACCATTTACatttgaattaataaaacaaacatgaaaacatgACAAATCAtaccaaaaatgtaaatgaagaacacaataaacaaagagtgagaaataattaatttagtatAACATAGTAATACCCTTTAATTATTACCACTAGTGACTGTAGGCCTAAGTGACTATCTTCTTGAATGAAGTTGGAAGTTTAGTTTAAACACTATTAAACAGCACTAAAATGGCATTTGATATGTTTACAGAAAGACTGCACTAAGATGTTTATATGTGccctgaaaaaaagttttttttggaaaaaattgTCTTAATTGTTAggaagtatatatttttaataaagacataaaa
>XM_022677854.1
AGGCACTTGATGGCGACGGTGGTCCTCCAGTCGCTGTGCAGCGCCCGGAACACGGTGCCGAAGCCGCCCTTGCTGATGTAGTGCAGCTGCAGTAATGGCCGGCCCATTTGTTCCAGTCCCCTACCCTGTAGAAAGATGTCCAGCTATCTGGCAGCTCAGACACGGGATCAGAAGGACCTCCAGCCTCAGCAATCTCTCCGTCAACTCGGACTCATCCCTCTCACAGAACGCCTGGGTGAAGCCAGGGCTGAGGAAGATGAACAGTTTGGACTGCAGAGCCAGTAGAGAGAGTCTGTATGAAAGACCACCCTTAGCCACCTTGGTGGGCTACGAGGTCATGGAGGAGAGGGCGAAGTTCACGGTCTATAAGGTACTGGTAAGCAGAGAGCCGGACGAGAGCTGGGTGATTTTCAGAGGATACACCGACTTCTGCAGACTCAATGATAAGcttAAGGAGGTGTTTCCCAAATTCAGACTTGCTCTGCCGCCCAAGCGCTGGTTCAAAGACAACTATGACATGAACTTTCTGGAGGAGAGACAGCTGGGTCTTCATGCGTTCCTCCAGAACCTGGTTGCTCACAAAGACGTCACTAACAGTGATGCAGTACGAGCATTTTTATGCCTGGATGACCCACCTGGTCCTTTCGACAGTCTGGAAGAGAGCAGGGCCTACTGTGAGACGCTAGAGGAGACCAACCATCGCCTGCAGAGGGAGCTGCTGGACAAACAGAGAGAACTCGATTCTTTGAGAACAATCCTGGAGGACCGACAGCTCCAAATCAGCAGATTGGAGAAAACAAAGAATGGCATCTGCAGTGGCCAGGAAGAGAGAAGTGAATTCCTGGCAGTGCATGTTGAGAGCAGTGTTGAGGCTGGTGTGAACGCAGAAGTCGACACAGAAGAGGCCTTTATAGCAGTAGAGATGGACTACACCATGACCCCGGACCGAAGTTTAGAGATCCAGTTGCCAAAGAGAGGCTATGGAGCTTGCTGGAGTGGACCATCGACTGAGAACCAAGAGTGTGCCTTCTTCCAAACATCTGAAGTTCTTGAAGACCAGGTTTAGACCACTAATGTCCACACTGACTGACTGGAGCTCTTactactgtctaactatagattTGATTtatacaatgtatttatttcaatGGAATTACACTATTAACCAGTTCACTTATAGACCATTTACatttgaattaataaaacaaacatgaaaacatgACAAATCAtaccaaaaatgtaaatgaagaacacaataaacaaagagtgagaaataattaatttagtatAACATAGTAATACCCTTTAATTATTACCACTAGTGACTGTAGGCCTAAGTGACTATCTTCTTGAATGAAGTTGGAAGTTTAGTTTAAACACTATTAAACAGCACTAAAATGGCATTTGATATGTTTACAGAAAGACTGCACTAAGATGTTTATATGTGccctgaaaaaaagttttttttggaaaaaattgTCTTAATTGTTAggaagtatatatttttaataaagacataaaa
>XM_022677855.1
ATTAACGGCATGACTGAGGGACAGGAGGCGGGGACGGTGAAGACTGGCGCTCCAGCCAACGATAACCCACTCGACTGGAGAGAACGCTGCAGTAATGGCCGGCCCATTTGTTCCAGTCCCCTACCCTGTAGAAAGATGTCCAGCTATCTGGCAGCTCAGACACGGGATCAGAAGGACCTCCAGCCTCAGCAATCTCTCCGTCAACTCGGACTCATCCCTCTCACAGAACGCCTGGGTGAAGCCAGGGCTGAGGAAGATGAACAGTTTGGACTGCAGAGCCAGTAGAGAGAGTCTGTATGAAAGACCACCCTTAGCCACCTTGGTGGGCTACGAGGTCATGGAGGAGAGGGCGAAGTTCACGGTCTATAAGGTACTGGTAAGCAGAGAGCCGGACGAGAGCTGGGTGATTTTCAGAGGATACACCGACTTCTGCAGACTCAATGATAAGcttAAGGAGGTGTTTCCCAAATTCAGACTTGCTCTGCCGCCCAAGCGCTGGTTCAAAGACAACTATGACATGAACTTTCTGGAGGAGAGACAGCTGGGTCTTCATGCGTTCCTCCAGAACCTGGTTGCTCACAAAGACGTCACTAACAGTGATGCAGTACGAGCATTTTTATGCCTGGATGACCCACCTGGTCCTTTCGACAGTCTGGAAGAGAGCAGGGCCTACTGTGAGACGCTAGAGGAGACCAACCATCGCCTGCAGAGGGAGCTGCTGGACAAACAGAGAGAACTCGATTCTTTGAGAACAATCCTGGAGGACCGACAGCTCCAAATCAGCAGATTGGAGAAAACAAAGAATGGCATCTGCAGTGGCCAGGAAGAGAGAAGTGAATTCCTGGCAGTGCATGTTGAGAGCAGTGTTGAGGCTGGTGTGAACGCAGAAGTCGACACAGAAGAGGCCTTTATAGCAGTAGAGATGGACTACACCATGACCCCGGACCGAAGTTTAGAGATCCAGTTGCCAAAGAGAGGCTATGGAGCTTGCTGGAGTGGACCATCGACTGAGAACCAAGAGTGTGCCTTCTTCCAAACATCTGAAGTTCTTGAAGACCAGGTTTAGACCACTAATGTCCACACTGACTGACTGGAGCTCTTactactgtctaactatagattTGATTtatacaatgtatttatttcaatGGAATTACACTATTAACCAGTTCACTTATAGACCATTTACatttgaattaataaaacaaacatgaaaacatgACAAATCAtaccaaaaatgtaaatgaagaacacaataaacaaagagtgagaaataattaatttagtatAACATAGTAATACCCTTTAATTATTACCACTAGTGACTGTAGGCCTAAGTGACTATCTTCTTGAATGAAGTTGGAAGTTTAGTTTAAACACTATTAAACAGCACTAAAATGGCATTTGATATGTTTACAGAAAGACTGCACTAAGATGTTTATATGTGccctgaaaaaaagttttttttggaaaaaattgTCTTAATTGTTAggaagtatatatttttaataaagacataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677853.1 True 1542 mRNA 0.44 8 4144233 4154519
XM_022677854.1 False 1522 mRNA 0.45 8 4142096 4154519
XM_022677855.1 False 1522 mRNA 0.45 8 4142364 4154519

Neighbor

gene id symbol gene type direction distance location
ccdc39 NA coding upstream 46654 4081012 ~ 4095442 (+)
dcun1d1 dcun1d1,LOC103032878,LOC107568628,LOC105889496,LOC107722250,LOC107681826 coding upstream 61992 4075488 ~ 4080104 (+)
LOC103033521 b3gnt5 coding upstream 76622 4052730 ~ 4065474 (+)
LOC103032574 tbl1xr1b,LOC103032574,LOC108437519,LOC107656866,LOC108267995,LOC107568629,LOC106530177,LOC108238308,LOC100706341 coding upstream 95457 4022436 ~ 4046639 (+)
LOC103021527 NA coding upstream 139180 3995942 ~ 4002916 (+)
LOC103035115 rc3h1,LOC108437509,LOC108267889,LOC107681708 coding downstream 153129 4307648 ~ 4326399 (+)
extl2 extl2 coding downstream 184564 4339083 ~ 4344329 (+)
LOC103035953 dbt,LOC108411488,LOC107681723,LOC107715513,LOC108267843 coding downstream 231099 4385618 ~ 4393644 (+)
LOC103026534 LOC108428888,LOC108268317 coding downstream 490482 4645001 ~ 4658142 (+)
LOC103038785 NA coding downstream 559596 4714115 ~ 4719644 (+)
G138758 NA non-coding upstream 27978 4104980 ~ 4114118 (+)
G138747 NA non-coding upstream 70008 4068787 ~ 4072088 (+)
G138744 NA non-coding upstream 102238 4036371 ~ 4039858 (+)
G138731 NA non-coding upstream 234973 3881551 ~ 3907123 (+)
G138671 NA non-coding upstream 388686 3720938 ~ 3753410 (+)
G138748 NA non-coding downstream 18252 4172771 ~ 4175585 (+)
G138840 NA non-coding downstream 82150 4236669 ~ 4237527 (+)
G138863 NA non-coding downstream 196862 4351381 ~ 4353535 (+)
G138865 NA non-coding downstream 200323 4354842 ~ 4355190 (+)
G138866 NA non-coding downstream 201368 4355887 ~ 4356137 (+)
LOC111194271 NA other upstream 39855 4095997 ~ 4102241 (+)
LOC103047488 pls1,LOC108437523,LOC107722705,LOC107656864,LOC107565818,LOC107599860,LOC107709028,LOC107681752 other upstream 302724 3801853 ~ 3839372 (+)
G138701 NA other upstream 307636 3833255 ~ 3834460 (+)
LOC103026108 selenot,selt1a,LOC107681817,LOC107708642 other upstream 1022608 3115420 ~ 3119488 (+)
LOC103024858 NA other upstream 1057231 3082056 ~ 3084865 (+)
LOC103023077 NA other downstream 11424 4165943 ~ 4172010 (+)
G138839 NA other downstream 83090 4237609 ~ 4245864 (+)
LOC103026815 LOC108428843 other downstream 518861 4673380 ~ 4722774 (+)
LOC103039271 LOC108428890,LOC108268340 other downstream 548827 4703346 ~ 4708663 (+)
LOC103041273 zgc:110158,LOC108428898,LOC108267812,LOC107678694,LOC105906991,LOC107690032,LOC107721784,LOC102197062 other downstream 735354 4889873 ~ 5007006 (+)

Expression


Co-expression Network